DN617696

Overview
NameDN617696
Unique NameDN617696
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig888 contig Csv1_Contig888:256..743. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS11_METTH (30S ribosomal protein S11P OS=Methanobacterium thermoautotrophicum GN=rps11p PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.798e-16
Identity = 46/79 (58.23%), Postives = 55/79 (69.62%), Query Frame = -3
Query:  244 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 480
            V+ADR ESSP+AAM AA   +   KE GI  LHIK+RA           GAQ+A+RALAR+GM+IG+IEDVTPIP D T
Sbjct:   41 VRADRQESSPFAAMEAATRAADDAKEKGIVGLHIKVRAPGGNGPRTPGPGAQAAIRALARAGMRIGKIEDVTPIPHDGT 119          
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS11_METB6 (30S ribosomal protein S11P OS=Methanoregula boonei (strain 6A8) GN=rps11p PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.798e-16
Identity = 44/78 (56.41%), Postives = 56/78 (71.79%), Query Frame = -3
Query:  247 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDS 480
            VK DR+ESSPYAAM  A +V+   +E GI  +H+K+RA           GAQ+A+RALAR+GM+IGRIEDVTP+P DS
Sbjct:   43 VKQDRNESSPYAAMQMAANVAAIAREKGIVGVHVKVRAPGQGKQRSPGPGAQAAIRALARAGMRIGRIEDVTPVPHDS 120          
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS11_AERPE (30S ribosomal protein S11P OS=Aeropyrum pernix GN=rps11p PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.798e-16
Identity = 45/79 (56.96%), Postives = 56/79 (70.89%), Query Frame = -3
Query:  244 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 480
            VKADR++ SPYAAM+AA   + +  E GI A+HIK+RA           GAQ+A+RALAR+G  IGRIEDVTPIP D+T
Sbjct:   44 VKADREKPSPYAAMIAASRAAQKAMERGIAAIHIKVRAPGGHGPKTPGPGAQAAIRALARAGFIIGRIEDVTPIPHDTT 122          
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS11_SULTO (30S ribosomal protein S11P OS=Sulfolobus tokodaii GN=rps11p PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 2.349e-16
Identity = 46/78 (58.97%), Postives = 55/78 (70.51%), Query Frame = -3
Query:  247 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDS 480
            VKADR++ SPYAAMLAA   +T   + GI+A+HIK+RA           GAQ A+RALAR+G  IGRIEDVTPIP DS
Sbjct:   43 VKADREKPSPYAAMLAANKAATEAFDKGISAIHIKVRAQGGYGSKTPGPGAQPAIRALARAGFIIGRIEDVTPIPHDS 120          
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS11_SULSO (30S ribosomal protein S11P OS=Sulfolobus solfataricus GN=rps11p PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 2.349e-16
Identity = 47/78 (60.26%), Postives = 55/78 (70.51%), Query Frame = -3
Query:  247 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDS 480
            VKADR++SSPYAAMLAA   ++   E GI ALHIK+RA           GAQ A+RALAR+G  IGRIEDVTPIP D+
Sbjct:   43 VKADREKSSPYAAMLAANKAASDALEKGIMALHIKVRAPGGYGSKTPGPGAQPAIRALARAGFIIGRIEDVTPIPHDT 120          
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS11_METTP (30S ribosomal protein S11P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps11p PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.006e-16
Identity = 44/79 (55.70%), Postives = 54/79 (68.35%), Query Frame = -3
Query:  244 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 480
            VKA RDESSPY AM  A  V+ + K  GI  +H+K+RA           GAQ+A+RALAR+G++IGRIEDVTPIP D T
Sbjct:   40 VKAARDESSPYTAMQMAMQVAEQAKAKGIVGVHVKVRAPGGNKQRSPGPGAQAAIRALARAGLRIGRIEDVTPIPHDGT 118          
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS11_HYPBU (30S ribosomal protein S11P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps11p PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.006e-16
Identity = 45/79 (56.96%), Postives = 56/79 (70.89%), Query Frame = -3
Query:  244 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 480
            VKADR++ SPYAAMLAA   + +  + GI ALHIK+RA           GAQ+A+RALAR+G  IGRIEDVTP+P D+T
Sbjct:   44 VKADREKPSPYAAMLAASRAAQQAMDRGIMALHIKVRAPGGHGPKTPGPGAQAAIRALARAGFIIGRIEDVTPLPHDTT 122          
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS14_ENCCU (40S ribosomal protein S14 OS=Encephalitozoon cuniculi GN=RPS14 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.232e-16
Identity = 42/79 (53.16%), Postives = 54/79 (68.35%), Query Frame = -3
Query:  250 VKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTD 486
            ++VKA RDE SPYAAMLAAQDV+T+    G+  LH KLR            GAQ+A+R L R+G+++GRIEDVTP+  D
Sbjct:   43 MRVKAQRDEGSPYAAMLAAQDVATKILGRGVKVLHFKLRGAGGVKPMALGPGAQTAIRTLIRAGLRVGRIEDVTPVARD 121          
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS11_METST (30S ribosomal protein S11P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps11p PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.232e-16
Identity = 45/79 (56.96%), Postives = 55/79 (69.62%), Query Frame = -3
Query:  244 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 480
            V++DR ESSP+AAM AA  V+   KE GI  LHIK+RA           GAQ+ +RALAR+G+KIG+IEDVTPIP D T
Sbjct:   41 VRSDRQESSPFAAMEAANRVADDIKEKGIAGLHIKVRASGGNGPRTPGPGAQATIRALARAGIKIGKIEDVTPIPHDGT 119          
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS11_METHJ (30S ribosomal protein S11P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps11p PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.232e-16
Identity = 44/78 (56.41%), Postives = 55/78 (70.51%), Query Frame = -3
Query:  247 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDS 480
            VK DR+ESSPYAAM  A +V+   +E GI  LH+K+RA           GAQ+A+RALAR+GM+IG IEDVTP+P DS
Sbjct:   42 VKQDRNESSPYAAMQMAGNVAQAAREKGIVGLHVKVRAPGRGKQRSPGPGAQAAIRALARAGMRIGLIEDVTPVPHDS 119          
The following BLAST results are available for this feature:
BLAST of DN617696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
RS11_METTH1.798e-1658.2330S ribosomal protein S11P OS=Methanobacterium the... [more]
RS11_METB61.798e-1656.4130S ribosomal protein S11P OS=Methanoregula boonei... [more]
RS11_AERPE1.798e-1656.9630S ribosomal protein S11P OS=Aeropyrum pernix GN=... [more]
RS11_SULTO2.349e-1658.9730S ribosomal protein S11P OS=Sulfolobus tokodaii ... [more]
RS11_SULSO2.349e-1660.2630S ribosomal protein S11P OS=Sulfolobus solfatari... [more]
RS11_METTP4.006e-1655.7030S ribosomal protein S11P OS=Methanosaeta thermop... [more]
RS11_HYPBU4.006e-1656.9630S ribosomal protein S11P OS=Hyperthermus butylic... [more]
RS14_ENCCU5.232e-1653.1640S ribosomal protein S14 OS=Encephalitozoon cunic... [more]
RS11_METST5.232e-1656.9630S ribosomal protein S11P OS=Methanosphaera stadt... [more]
RS11_METHJ5.232e-1656.4130S ribosomal protein S11P OS=Methanospirillum hun... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01J03_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001J03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617696 ID=DN617696; Name=DN617696; organism=Citrus sinensis; type=EST; length=488bp
TTTTTTTTTGCAGACACCAGTAATGCCATATGCTCTCAAGGCCGCCTATT
GTTTTTACAAAAAGCAGGAAAATAAAATCTTTTAATAGCGACAGATAAAA
CTATAAATTAGTTCCAAAATTGAAAAGTAACTTCAACTAACTTTAAGGAA
CAACTGTCCCATTCAGAATGCCCGCATAAAACAAGACAATCGGACAAACA
ACACAGCTTAAAGCCTTCTTCCTCTTCTACCACCCTTTCTGCGTGTGCTA
TCAGTGGGAATAGGGGTCACATCCTCTATGCGACCAATTTTCATCCCAGA
ACGAGCAAGGGCACGAAGAGCAGACTGGGCACCTGGACCAGGTGTTTTGG
TTTTGTTCCCACCAGTAGCACGCAGCTTAATATGAAGAGCAGTGATTCCA
AGCTCCTTGCATCTGGTTGAAACATCTTGTGCTGCAAGCATGGCAGCGTA
TGGAGAGGACTCATCTCGGTCAGCTTTCACCTTCACCT
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