DN617696

Overview
NameDN617696
Unique NameDN617696
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig888 contig Csv1_Contig888:256..743. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS11_METM5 (30S ribosomal protein S11P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps11p PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.750e-14
Identity = 40/79 (50.63%), Postives = 54/79 (68.35%), Query Frame = -3
Query:  244 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 480
            V+  RDESSPYAAM AA  ++   ++ GI  +H+K+RA           GAQ+A+RAL+R+G++IGRIED TPIP D T
Sbjct:   39 VRNQRDESSPYAAMQAAFKIADLMRDKGIDQVHVKVRATGGQKSKNPGPGAQAAIRALSRAGIRIGRIEDATPIPHDGT 117          
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS11_METBU (30S ribosomal protein S11P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps11p PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.750e-14
Identity = 40/79 (50.63%), Postives = 53/79 (67.09%), Query Frame = -3
Query:  244 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 480
            VKA RDESSPY AM  A  ++   ++ G+  +HIK+RA           GAQ+A+RA AR+G++IGRIEDVTP+P D T
Sbjct:   40 VKAARDESSPYTAMQMATQLADILRDKGLEGVHIKVRAPGGNKQRSPGPGAQAAIRAFARAGVRIGRIEDVTPVPHDGT 118          
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS11_CALMQ (30S ribosomal protein S11P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps11p PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.750e-14
Identity = 42/78 (53.85%), Postives = 52/78 (66.67%), Query Frame = -3
Query:  247 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDS 480
            VKADRD+ SPYAAM+AA   +      GI A+H+K+R            GA +A+RALAR+GM IGRIEDVTPIP D+
Sbjct:   43 VKADRDKPSPYAAMMAAYKAAQIAMARGINAVHVKVRGPGGYGLKVPGPGAVAAIRALARAGMIIGRIEDVTPIPHDT 120          
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS11_THEVO (30S ribosomal protein S11P OS=Thermoplasma volcanium GN=rps11p PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 4.897e-14
Identity = 45/79 (56.96%), Postives = 54/79 (68.35%), Query Frame = -3
Query:  244 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 480
            VK DRD++SPYAAM AA  VS   KE  IT L IK+RA           GAQ+A+RAL+R+G+KI RIE+VTPIP D T
Sbjct:   43 VKNDRDQASPYAAMKAADMVSETLKEHEITDLIIKVRAPGGNKSKIPGPGAQAAIRALSRAGLKIVRIEEVTPIPHDGT 121          
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS11_HALSA (30S ribosomal protein S11P OS=Halobacterium salinarium GN=rps11p PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 4.897e-14
Identity = 39/79 (49.37%), Postives = 54/79 (68.35%), Query Frame = -3
Query:  244 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 480
            VK +RDE+SPYAAM  A+ ++    + GI  +H+++R            GAQ+A+RALAR+G++IGRIEDVTPIP D T
Sbjct:   41 VKQNRDEASPYAAMQMAEQLAEEVLDQGIEKVHVRVRGPGGNLQRSPGPGAQAAIRALARAGLEIGRIEDVTPIPHDGT 119          
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS11_PYRCJ (30S ribosomal protein S11P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps11p PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.072e-13
Identity = 40/78 (51.28%), Postives = 51/78 (65.38%), Query Frame = -3
Query:  247 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDS 480
            V+AD+D+ SP+AAM AA   +      GI A+HIK+R            GA +A+RALARSG+ IGRIEDVTPIP D+
Sbjct:   52 VRADKDKPSPWAAMQAAYKAAQLALARGINAVHIKVRGPGGYGMKVPGPGASAAIRALARSGLVIGRIEDVTPIPHDT 129          
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS11_PYRAR (30S ribosomal protein S11P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps11p PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.072e-13
Identity = 40/77 (51.95%), Postives = 50/77 (64.94%), Query Frame = -3
Query:  250 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTD 480
            V+AD+D+ SP+AAM AA   +      GI A+HIK+R            GA +A+RALARSG+ IGRIEDVTPIP D
Sbjct:   49 VRADKDKPSPWAAMQAAYKAAQLAMARGINAVHIKVRGPGGYGMKVPGPGASAAIRALARSGLVIGRIEDVTPIPHD 125          
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS11_PYRIL (30S ribosomal protein S11P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps11p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.236e-13
Identity = 40/78 (51.28%), Postives = 51/78 (65.38%), Query Frame = -3
Query:  247 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDS 480
            V+AD+D+ SP+AAM AA   +      GI A+HIK+R            GA +A+RALARSG+ IGRIEDVTPIP D+
Sbjct:   50 VRADKDKPSPWAAMQAAYKAAQLALARGINAVHIKVRGPGGYGMKVPGPGASAAIRALARSGLIIGRIEDVTPIPHDT 127          
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS11_PYRAE (30S ribosomal protein S11P OS=Pyrobaculum aerophilum GN=rps11p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.236e-13
Identity = 40/77 (51.95%), Postives = 50/77 (64.94%), Query Frame = -3
Query:  250 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTD 480
            V+AD+D+ SP+AAM AA   +      GI A+HIK+R            GA +A+RALARSG+ IGRIEDVTPIP D
Sbjct:   44 VRADKDKPSPWAAMQAAYKAAQLALARGINAVHIKVRGPGGYGMKVPGPGASAAIRALARSGLVIGRIEDVTPIPHD 120          
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS11_HALMA (30S ribosomal protein S11P OS=Haloarcula marismortui GN=rps11p PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 2.687e-12
Identity = 36/79 (45.57%), Postives = 52/79 (65.82%), Query Frame = -3
Query:  244 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 480
            VK +RDE+SPYAAM  A+ V+ +  + G+  + +++R            GAQ+ +RALAR+G++IGRIEDVTP P D T
Sbjct:   43 VKQNRDEASPYAAMQMAEVVAEKALDRGVEGVDVRVRGPGGNLQTSPGPGAQATIRALARAGLEIGRIEDVTPTPHDGT 121          
The following BLAST results are available for this feature:
BLAST of DN617696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
RS11_METM53.750e-1450.6330S ribosomal protein S11P OS=Methanococcus maripa... [more]
RS11_METBU3.750e-1450.6330S ribosomal protein S11P OS=Methanococcoides bur... [more]
RS11_CALMQ3.750e-1453.8530S ribosomal protein S11P OS=Caldivirga maquiling... [more]
RS11_THEVO4.897e-1456.9630S ribosomal protein S11P OS=Thermoplasma volcani... [more]
RS11_HALSA4.897e-1449.3730S ribosomal protein S11P OS=Halobacterium salina... [more]
RS11_PYRCJ7.072e-1351.2830S ribosomal protein S11P OS=Pyrobaculum calidifo... [more]
RS11_PYRAR7.072e-1351.9530S ribosomal protein S11P OS=Pyrobaculum arsenati... [more]
RS11_PYRIL9.236e-1351.2830S ribosomal protein S11P OS=Pyrobaculum islandic... [more]
RS11_PYRAE9.236e-1351.9530S ribosomal protein S11P OS=Pyrobaculum aerophil... [more]
RS11_HALMA2.687e-1245.5730S ribosomal protein S11P OS=Haloarcula marismort... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01J03_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001J03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617696 ID=DN617696; Name=DN617696; organism=Citrus sinensis; type=EST; length=488bp
TTTTTTTTTGCAGACACCAGTAATGCCATATGCTCTCAAGGCCGCCTATT
GTTTTTACAAAAAGCAGGAAAATAAAATCTTTTAATAGCGACAGATAAAA
CTATAAATTAGTTCCAAAATTGAAAAGTAACTTCAACTAACTTTAAGGAA
CAACTGTCCCATTCAGAATGCCCGCATAAAACAAGACAATCGGACAAACA
ACACAGCTTAAAGCCTTCTTCCTCTTCTACCACCCTTTCTGCGTGTGCTA
TCAGTGGGAATAGGGGTCACATCCTCTATGCGACCAATTTTCATCCCAGA
ACGAGCAAGGGCACGAAGAGCAGACTGGGCACCTGGACCAGGTGTTTTGG
TTTTGTTCCCACCAGTAGCACGCAGCTTAATATGAAGAGCAGTGATTCCA
AGCTCCTTGCATCTGGTTGAAACATCTTGTGCTGCAAGCATGGCAGCGTA
TGGAGAGGACTCATCTCGGTCAGCTTTCACCTTCACCT
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