DN617688

Overview
NameDN617688
Unique NameDN617688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length548
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: DIM1_YEAST (Dimethyladenosine transferase OS=Saccharomyces cerevisiae GN=DIM1 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 5.608e-50
Identity = 94/182 (51.65%), Postives = 126/182 (69.23%), Query Frame = 1
Query:    1 RKEKGKQKSXXXXXXXXXXXXISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546
            +K  G   S              F+   GQHILKNPL+ + IV KA I+ +DV+LE+GPGTGNLT ++LE  K V+AVE+D RM  EL +R + TP   +L+++ GD +KT+LPYFDIC++N PYQISSPL FKL+      R +I+MFQ+EFA+RL+A+PGD LYCRLS N Q+ A V+H+
Sbjct:    7 KKYSGATSSKQVSAEKHLSSVFKFNTDLGQHILKNPLVAQGIVDKAQIRPSDVVLEVGPGTGNLTVRILEQAKNVVAVEMDPRMAAELTKRVRGTPVEKKLEIMLGDFMKTELPYFDICISNTPYQISSPLVFKLINQPRPPRVSILMFQREFALRLLARPGDSLYCRLSANVQMWANVTHI 188          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: DIM1_CANGA (Dimethyladenosine transferase OS=Candida glabrata GN=DIM1 PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 5.608e-50
Identity = 91/159 (57.23%), Postives = 121/159 (76.10%), Query Frame = 1
Query:   70 FHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546
            F+   GQHILKNPL+ + IV KA IK +D++LE+GPGTGNLT ++LE  + V+AVE+D RM  EL +R   TP   +L+++ GD +KT+LPYFDIC++N PYQISSPL FKL+      R +I+MFQ+EFAMRL+A+PGD LYCRLS N Q+ A V+H+
Sbjct:   30 FNTDLGQHILKNPLVAQGIVDKAQIKPSDIVLEVGPGTGNLTVRILEQARKVVAVEMDPRMAAELTKRVHGTPAEKKLEIMLGDFMKTELPYFDICISNTPYQISSPLVFKLINQPRPPRVSILMFQREFAMRLLARPGDSLYCRLSANVQMWANVTHI 188          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: DIM1_ASHGO (Dimethyladenosine transferase OS=Ashbya gossypii GN=DIM1 PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.249e-49
Identity = 91/159 (57.23%), Postives = 120/159 (75.47%), Query Frame = 1
Query:   70 FHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546
            F+   GQHILKNPL+ + IV KA IK +D++LE+GPGTGNLT ++LE  + V+AVE D RM  EL +R   TP   +L+++ GD +KT+LPYFDIC++N PYQISSPL FKL+      R +I+MFQ+EFAMRL+A+PGD LYCRLS N Q+ A V+H+
Sbjct:   30 FNTDLGQHILKNPLVAQGIVDKAQIKPSDIVLEVGPGTGNLTVRILEQARKVVAVEFDPRMAAELTKRVHGTPAEKKLEIMLGDFMKTELPYFDICISNTPYQISSPLVFKLINQPRPPRVSILMFQREFAMRLLARPGDSLYCRLSANVQMWANVTHV 188          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: DIM1_YARLI (Dimethyladenosine transferase OS=Yarrowia lipolytica GN=DIM1 PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 1.632e-49
Identity = 91/154 (59.09%), Postives = 119/154 (77.27%), Query Frame = 1
Query:   85 GQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546
            GQHILKNPL+ + IV K+ IK +D +LE+GPGTGNLT ++LE  + VIAVE+D RM  EL +R Q  P   +L+++ GD +KT+LPYFD+C++N PYQISSPL FKLL      R +++MFQ EFAMRL+A+PGD LYCRLSVN Q+ A+VSH+
Sbjct:   35 GQHILKNPLVAQGIVDKSDIKPSDTVLEVGPGTGNLTVRILEKARKVIAVEMDPRMAAELTKRVQGKPEQKKLEIMLGDCIKTELPYFDVCISNTPYQISSPLVFKLLNQPRPPRVSVLMFQHEFAMRLLARPGDSLYCRLSVNVQMWAKVSHV 188          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_METBU (Probable ribosomal RNA small subunit methyltransferase A OS=Methanococcoides burtonii (strain DSM 6242) GN=rsmA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.876e-29
Identity = 72/148 (48.65%), Postives = 96/148 (64.86%), Query Frame = 1
Query:   88 QHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHA 531
            QH L +   ++SIV +A +   DV+LEIG G GNLT++LLE    V  +ELD  +V  L+ RF     + +L++I GDVLK DLP F+  VAN+PY ISSP+TFKL  H+  F   I+M+Q EFA R+VA+   + Y RLSVNT   A
Sbjct:   18 QHFLIDERSLDSIVDQAELSEKDVVLEIGGGIGNLTERLLEKAGKVYVIELDPALVHVLKDRFSD---NEKLEIIPGDVLKLDLPKFNKVVANLPYSISSPITFKLFKHE--FELGILMYQYEFAQRMVAKANTENYSRLSVNTHYFA 160          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_METHJ (Probable ribosomal RNA small subunit methyltransferase A OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rsmA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 7.127e-29
Identity = 72/153 (47.06%), Postives = 97/153 (63.40%), Query Frame = 1
Query:   82 KGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVS 540
            + QH L +P +V  I     I S  ++LEIGPG G LT+ LLE G  VI+VELD  ++  L RRF S      L ++QGD +K  LP F+I +AN+PY ISSP+TF+LL     F  AI+M+QKEFA R++A PG +   RLS+  Q +AR +
Sbjct:    5 RDQHFLTDPRIVARIADILDI-SGRIVLEIGPGEGILTEALLERGARVISVELDRTLIERLSRRFASEIADGSLTLLQGDAVKVPLPPFEIVMANLPYSISSPITFRLL--DIGFEAAILMYQKEFADRMMAHPGTRDCGRLSIMLQTYARAN 154          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_THEGJ (Probable ribosomal RNA small subunit methyltransferase A OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rsmA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.620e-28
Identity = 69/155 (44.52%), Postives = 104/155 (67.10%), Query Frame = 1
Query:   73 HKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537
            +++ GQ+ L  P ++E  V++A +   D +LEIGPG G LT +L +    V A+E DSRM+  LQR + S P    +++I+GD +K + P F+  V+N+PYQISSP+TFKLL H+  F  A++++Q EFA R++A+PGD+ Y RLS+  Q  A V
Sbjct:   17 NRTLGQNFLIVPDIIERNVKRAELSEKDTVLEIGPGLGVLTDELSKKAGKVYAIEADSRMIEILQREY-SWP---NVELIKGDAVKVEWPEFNKMVSNLPYQISSPVTFKLLKHE--FERAVLIYQLEFAERMIAKPGDRNYSRLSLMVQAKANV 165          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_PYRAB (Probable ribosomal RNA small subunit methyltransferase A OS=Pyrococcus abyssi GN=rsmA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.880e-28
Identity = 66/151 (43.71%), Postives = 98/151 (64.90%), Query Frame = 1
Query:   85 GQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537
            GQH L    +++  ++ A +  +DV+LE+GPG G LT +L +  K V  +ELD R++  L+  +      N +++IQGD +K + P F+  V+NIPYQISSP TFKLL  +  F  A++M+Q EFA+R+ A+PGD+ Y RLS+ TQ  A V
Sbjct:   21 GQHFLIVKDVIDKAIEVAEVSKSDVVLEVGPGLGFLTDELSKRAKKVFTIELDRRIIEILRNEYSW----NNVEIIQGDAVKVEWPSFNKVVSNIPYQISSPFTFKLL--KMEFERAVVMYQLEFALRMTAKPGDRNYSRLSLMTQALADV 165          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_ARCFU (Probable ribosomal RNA small subunit methyltransferase A OS=Archaeoglobus fulgidus GN=rsmA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.344e-27
Identity = 70/155 (45.16%), Postives = 92/155 (59.35%), Query Frame = 1
Query:   64 ISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPG-----DKLYCRLSV 513
            +   KS GQH+L +  ++  IV  A +   DV+LE+G GTGNLT  LL     V+ +E D  MV  L+ RF       R ++IQGD LK D PYF   VANIPY+ISSPLTFKLL  +  FR A++M+Q+EFA RL  +        K YC+  +
Sbjct:    1 MKLRKSLGQHMLVDRRVISRIVGYAELSEDDVVLEVGCGTGNLTSALLRKCS-VVGIEKDPLMVKRLRERFSDFIGKGRFRLIQGDALKVDFPYFTKFVANIPYKISSPLTFKLL--KTDFRLAVVMYQREFAERLCGEDNRLGVISKTYCKAEI 152          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_METMA (Probable ribosomal RNA small subunit methyltransferase A OS=Methanosarcina mazei GN=rsmA PE=3 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 2.293e-27
Identity = 68/151 (45.03%), Postives = 95/151 (62.91%), Query Frame = 1
Query:   88 QHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVS 540
            QH L +   ++ IV  A +   D +LEIG G GNLT++L    K VIAVELD  +V  L  RF +   +  +++I GD LK D P FD  V+N+PY ISS +TFKLL H+  F+  ++M+Q EFA+R+V+ PG K Y RL+++T   A  S
Sbjct:   18 QHFLIDAGYLDRIVAAAELSPQDTVLEIGAGIGNLTERLARRAKKVIAVELDPALVSVLHDRFDA---AENIEIIAGDALKVDFPEFDKVVSNLPYSISSEITFKLLRHK--FKLGVLMYQYEFAVRMVSPPGCKDYSRLTIDTCYFADAS 163          
The following BLAST results are available for this feature:
BLAST of DN617688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DIM1_YEAST5.608e-5051.65Dimethyladenosine transferase OS=Saccharomyces cer... [more]
DIM1_CANGA5.608e-5057.23Dimethyladenosine transferase OS=Candida glabrata ... [more]
DIM1_ASHGO1.249e-4957.23Dimethyladenosine transferase OS=Ashbya gossypii G... [more]
DIM1_YARLI1.632e-4959.09Dimethyladenosine transferase OS=Yarrowia lipolyti... [more]
RSMA_METBU1.876e-2948.65Probable ribosomal RNA small subunit methyltransfe... [more]
RSMA_METHJ7.127e-2947.06Probable ribosomal RNA small subunit methyltransfe... [more]
RSMA_THEGJ4.620e-2844.52Probable ribosomal RNA small subunit methyltransfe... [more]
RSMA_PYRAB7.880e-2843.71Probable ribosomal RNA small subunit methyltransfe... [more]
RSMA_ARCFU1.344e-2745.16Probable ribosomal RNA small subunit methyltransfe... [more]
RSMA_METMA2.293e-2745.03Probable ribosomal RNA small subunit methyltransfe... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I22_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617688 ID=DN617688; Name=DN617688; organism=Citrus sinensis; type=EST; length=548bp
AGGAAGGAGAAAGGAAAGCAGAAAAGTGGACCGTATCAAGGACAAGGACT
AGGAGCAGGAGGTATATCCTTCCACAAATCAAAGGGGCAGCACATTCTGA
AGAACCCTTTGCTTGTGGAGAGCATCGTCCAAAAAGCCGGCATCAAGAGC
ACCGATGTCATTCTTGAGATTGGTCCCGGCACTGGTAATCTCACCAAAAA
GCTTCTGGAAGTTGGCAAGATGGTCATCGCTGTCGAGCTTGACTCTCGTA
TGGTTCTCGAGCTCCAGCGCCGTTTTCAATCCACCCCTTACTCCAACCGT
TTAAAGGTCATTCAGGGTGATGTCCTCAAGACTGATCTTCCCTATTTTGA
TATATGTGTGGCAAACATCCCGTACCAAATCTCCTCCCCACTCACATTCA
AGTTGTTGTTTCACCAACCTGCCTTCAGATGCGCGATTATTATGTTCCAG
AAAGAATTTGCTATGAGACTTGTTGCTCAACCCGGTGACAAGCTCTACTG
TCGTCTTTCTGTGAATACACAACTTCATGCTCGGGTCTCCCACCTCCT
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