DN617688
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_SYNPX (Ribosomal RNA small subunit methyltransferase A OS=Synechococcus sp. (strain WH8102) GN=rsmA PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.141e-18 Identity = 64/164 (39.02%), Postives = 92/164 (56.10%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLL-EVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFD-----ICVANIPYQISSPLTFKLLFH-----QPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHAR 534 K GQH LK+ +++ IV A ++ +D +LE+GPG G LT++LL V AVELD +V L+ RF P R + QGDVL+ L D VANIPY I+ PL +L+ +P ++ +++ QK+ A R+ A+PG + LSV QL AR Sbjct: 10 KRFGQHWLKDQTVLDRIVAAADLQPSDRVLEVGPGRGALTERLLSSPAAAVQAVELDRDLVDGLRERFAGDP---RFSLRQGDVLELPLQLEDGVAASKVVANIPYNITGPLLDRLVGRLDRPVEPPYQRLVLLVQKQVAERIRARPGHSSFSALSVRMQLLAR 170
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_PSEPF (Ribosomal RNA small subunit methyltransferase A OS=Pseudomonas fluorescens (strain Pf0-1) GN=rsmA PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.141e-18 Identity = 61/167 (36.53%), Postives = 86/167 (51.50%), Query Frame = 1 Query: 73 HKSK---GQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDIC------VANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546 HK++ GQ+ L + +++ I++ K+ D +LEIGPG G LT +L G + VELD ++ L ++F + + QGD LK D + V N+PY IS+PL F LL + R M QKE RL A PG + RLS+ Q H RV HL Sbjct: 7 HKARKRFGQNFLHDAGVIDRILRSINAKAGDRMLEIGPGQGALTAGILNSGAQLDVVELDKDLIPILNQQFAG---KSNFNLHQGDALKFDFNSLNAAPNSLRVVGNLPYNISTPLIFHLLNNAGIIRDMHFMLQKEVVERLAAGPGGGDWGRLSIMVQYHCRVEHL 170
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_PROM4 (Ribosomal RNA small subunit methyltransferase A OS=Prochlorococcus marinus (strain MIT 9211) GN=rsmA PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.141e-18 Identity = 64/164 (39.02%), Postives = 90/164 (54.88%), Query Frame = 1 Query: 67 SFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFD-----ICVANIPYQISSPLTFKLL-----FHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQL 525 S K GQH LK+ ++E IV+ A + D +LEIGPG G LT KLL +V A+ELD+ +V+ L+ RF + R + GD LK L D VANIPY I+SPL +L+ F + + +++ QKE A R++A PG + +SV QL Sbjct: 7 SARKRFGQHWLKDVAILEKIVEAAELCENDRVLEIGPGRGALTHKLLNSKVSLVHAIELDTDLVVGLRERFF---HETRFSLKGGDALKISLLPPDGIEVNKVVANIPYNITSPLLERLIGKLGFFPETRYERLVLLLQKEVADRILAMPGQSSFSAMSVRVQL 167
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_LEUCK (Ribosomal RNA small subunit methyltransferase A OS=Leuconostoc citreum (strain KM20) GN=rsmA PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.141e-18 Identity = 60/163 (36.81%), Postives = 91/163 (55.83%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDI----------CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHAR 534 K GQ+ L + ++ IV AGI S D ++EIGPG G LT++L K V+A E+D MV L PY N +KVI+ D+LK +L + VAN+PY I++P+ +LL + ++ ++M Q+E A RL A+ G K Y L++ Q +A+ Sbjct: 26 KKFGQNFLTDLNVLHGIVDVAGITSEDYVIEIGPGIGALTEQLARSAKKVVAFEIDPHMVAVLAETL--LPYDN-VKVIENDILKVNLAHVIATEFGEGAHVKIVANLPYYITTPILMQLLRAKISWDNIVVMMQREVADRLNAEIGTKAYGVLTLTIQYYAQ 185
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_LACH4 (Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus helveticus (strain DPC 4571) GN=rsmA PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.141e-18 Identity = 62/171 (36.26%), Postives = 95/171 (55.56%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRM--VL--ELQRRFQSTPYSNRLKVIQGDVLKTDLP-----YFDI-----CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLY--CRLSVNTQLHARVS 540 K+ GQ+ L + + IV+ A I + D ++EIGPG G+LT++LL G V A E+D + +L EL ++ P +R K++ DVLK + +FD+ VAN+PY I++P+ F L F +M QKE A RL A+PG K Y +SV T++ +V+ Sbjct: 26 KNLGQNFLIDQNAILGIVEAADIHAGDQVIEIGPGIGSLTEQLLLAGAKVFAYEVDDSLPEILQNELPKKIGDAPLEDRFKLMLKDVLKANFKEDLAGFFDMSKPIKVVANLPYYITTPIIFALAESDLHFASLTLMMQKEVAERLEAKPGSKEYGPLTISVQTEMDVKVA 196
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_CUPTR (Ribosomal RNA small subunit methyltransferase A OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=rsmA PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.141e-18 Identity = 61/163 (37.42%), Postives = 83/163 (50.92%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDI------CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546 K GQ+ L + ++ IV ++ DV++EIGPG G LT LLE + VELD +V L+RR Y RL+V GD L D + V N+PY ISSPL F L+ M QKE R+VA+PG K + RLS+ Q+ + H+ Sbjct: 13 KRFGQNFLVDDTIIHGIVNAISPQAGDVLVEIGPGLGALTDPLLERIPQMQVVELDRDLVERLRRR-----YGERLQVHAGDALDFDFDKLAVPGRPLRIVGNLPYNISSPLLFHLMEFADHVHDQHFMLQKEVVERMVAEPGSKAFGRLSIMLQVRYYMEHV 170
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_CHLL2 (Ribosomal RNA small subunit methyltransferase A OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=rsmA PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.141e-18 Identity = 61/165 (36.97%), Postives = 88/165 (53.33%), Query Frame = 1 Query: 64 ISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDIC-----VANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSH 543 I+ K GQ+ L + + IV+ +G K + ILEIGPG G LTK+++EV VE D ++ ++ + +L VI+ D LK DL + NIPY I+SP+ F+LL ++ F A +M Q E AMR+VA P K Y L+V Q VS+ Sbjct: 11 IAVKKQLGQNFLTDRNITRKIVRLSGAKPEENILEIGPGFGALTKEIIEVCPSFTVVEKDPKLAAFIRTEYP------QLNVIEADFLKIDLEAVTGARKLRILGNIPYSITSPILFRLLEYRRCFMHATLMMQHEVAMRIVAVPSTKEYGILAVQLQAFFDVSY 169
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_LACAC (Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus acidophilus GN=rsmA PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.490e-18 Identity = 61/168 (36.31%), Postives = 93/168 (55.36%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRM--VL--ELQRRFQSTPYSNRLKVIQGDVLKTDLP-----YFDI-----CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537 K+ GQ+ L + + IV+ A I+ D ++EIGPG G+LT++LL G V A E+D + +L EL ++ ++R K++ DVLK D +FD+ VAN+PY I++P+ F L F +M QKE A RL A+PG+K Y L+++ Q V Sbjct: 26 KNLGQNFLVDQDAILGIVEAADIQPGDQVIEIGPGIGSLTEQLLLAGAKVFAYEVDDSLPEILHNELPKKIGEQSLNDRFKLLLKDVLKADFQNDLAGFFDMKQPIKVVANLPYYITTPIIFALSESDLHFSSLTLMMQKEVAERLEAKPGNKEYGPLTISVQTEMNV 193
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_GEOKA (Ribosomal RNA small subunit methyltransferase A OS=Geobacillus kaustophilus GN=rsmA PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.490e-18 Identity = 60/164 (36.59%), Postives = 88/164 (53.66%), Query Frame = 1 Query: 67 SFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYF----------DICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLH 528 SF KS GQ+ L + ++ IV A I +EIGPG G LT++L K V+A E+D R++ L +PY N +++ DVLK DL + VAN+PY +++P+ KLL + R ++M QKE A RL A+PG K Y L++ Q + Sbjct: 21 SFKKSLGQNFLIDANILRKIVDVADISPDTGAIEIGPGIGALTEQLARRAKKVVAFEIDGRLLPILADTL--SPYDN-VRIFHQDVLKADLHAVIAEELADVSDRMVVANLPYYVTTPIIMKLLTERLPIRGMVVMLQKEVADRLAAKPGTKDYGSLTIAVQYY 181
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_CORGB (Ribosomal RNA small subunit methyltransferase A OS=Corynebacterium glutamicum (strain R) GN=rsmA PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.490e-18 Identity = 55/161 (34.16%), Postives = 83/161 (51.55%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQ--STPYSNRLKVIQGDVLKTDLPYFDI----CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVS 540 K GQ+ + +P V IV A + D ++E+GPG G+LT L+E V AVE+D R+ EL FQ + +++L ++ D LK ++ VAN+PY +S P+ +L P ++M Q E A RL A PG K+Y SV + V+ Sbjct: 28 KKLGQNFVHDPNTVRRIVAAAELTPDDHVVEVGPGLGSLTLALVESAASVTAVEIDPRLAAELPETFQWRAPALAHKLSIVLKDALKVQQSDMEVQPTALVANLPYNVSVPVLLHMLEEFPTINKVLVMVQAEVADRLAADPGSKIYGVPSVKASFYGPVT 188 The following BLAST results are available for this feature:
BLAST of DN617688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DN617688 ID=DN617688; Name=DN617688; organism=Citrus sinensis; type=EST; length=548bpback to top |