DN617688

Overview
NameDN617688
Unique NameDN617688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length548
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_SYNPX (Ribosomal RNA small subunit methyltransferase A OS=Synechococcus sp. (strain WH8102) GN=rsmA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.141e-18
Identity = 64/164 (39.02%), Postives = 92/164 (56.10%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLL-EVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFD-----ICVANIPYQISSPLTFKLLFH-----QPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHAR 534
            K  GQH LK+  +++ IV  A ++ +D +LE+GPG G LT++LL      V AVELD  +V  L+ RF   P   R  + QGDVL+  L   D       VANIPY I+ PL  +L+       +P ++  +++ QK+ A R+ A+PG   +  LSV  QL AR
Sbjct:   10 KRFGQHWLKDQTVLDRIVAAADLQPSDRVLEVGPGRGALTERLLSSPAAAVQAVELDRDLVDGLRERFAGDP---RFSLRQGDVLELPLQLEDGVAASKVVANIPYNITGPLLDRLVGRLDRPVEPPYQRLVLLVQKQVAERIRARPGHSSFSALSVRMQLLAR 170          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_PSEPF (Ribosomal RNA small subunit methyltransferase A OS=Pseudomonas fluorescens (strain Pf0-1) GN=rsmA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.141e-18
Identity = 61/167 (36.53%), Postives = 86/167 (51.50%), Query Frame = 1
Query:   73 HKSK---GQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDIC------VANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546
            HK++   GQ+ L +  +++ I++    K+ D +LEIGPG G LT  +L  G  +  VELD  ++  L ++F      +   + QGD LK D    +        V N+PY IS+PL F LL +    R    M QKE   RL A PG   + RLS+  Q H RV HL
Sbjct:    7 HKARKRFGQNFLHDAGVIDRILRSINAKAGDRMLEIGPGQGALTAGILNSGAQLDVVELDKDLIPILNQQFAG---KSNFNLHQGDALKFDFNSLNAAPNSLRVVGNLPYNISTPLIFHLLNNAGIIRDMHFMLQKEVVERLAAGPGGGDWGRLSIMVQYHCRVEHL 170          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_PROM4 (Ribosomal RNA small subunit methyltransferase A OS=Prochlorococcus marinus (strain MIT 9211) GN=rsmA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.141e-18
Identity = 64/164 (39.02%), Postives = 90/164 (54.88%), Query Frame = 1
Query:   67 SFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFD-----ICVANIPYQISSPLTFKLL-----FHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQL 525
            S  K  GQH LK+  ++E IV+ A +   D +LEIGPG G LT KLL     +V A+ELD+ +V+ L+ RF    +  R  +  GD LK  L   D       VANIPY I+SPL  +L+     F +  +   +++ QKE A R++A PG   +  +SV  QL
Sbjct:    7 SARKRFGQHWLKDVAILEKIVEAAELCENDRVLEIGPGRGALTHKLLNSKVSLVHAIELDTDLVVGLRERFF---HETRFSLKGGDALKISLLPPDGIEVNKVVANIPYNITSPLLERLIGKLGFFPETRYERLVLLLQKEVADRILAMPGQSSFSAMSVRVQL 167          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_LEUCK (Ribosomal RNA small subunit methyltransferase A OS=Leuconostoc citreum (strain KM20) GN=rsmA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.141e-18
Identity = 60/163 (36.81%), Postives = 91/163 (55.83%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDI----------CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHAR 534
            K  GQ+ L +  ++  IV  AGI S D ++EIGPG G LT++L    K V+A E+D  MV  L       PY N +KVI+ D+LK +L +              VAN+PY I++P+  +LL  + ++   ++M Q+E A RL A+ G K Y  L++  Q +A+
Sbjct:   26 KKFGQNFLTDLNVLHGIVDVAGITSEDYVIEIGPGIGALTEQLARSAKKVVAFEIDPHMVAVLAETL--LPYDN-VKVIENDILKVNLAHVIATEFGEGAHVKIVANLPYYITTPILMQLLRAKISWDNIVVMMQREVADRLNAEIGTKAYGVLTLTIQYYAQ 185          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_LACH4 (Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus helveticus (strain DPC 4571) GN=rsmA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.141e-18
Identity = 62/171 (36.26%), Postives = 95/171 (55.56%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRM--VL--ELQRRFQSTPYSNRLKVIQGDVLKTDLP-----YFDI-----CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLY--CRLSVNTQLHARVS 540
            K+ GQ+ L +   +  IV+ A I + D ++EIGPG G+LT++LL  G  V A E+D  +  +L  EL ++    P  +R K++  DVLK +       +FD+      VAN+PY I++P+ F L      F    +M QKE A RL A+PG K Y    +SV T++  +V+
Sbjct:   26 KNLGQNFLIDQNAILGIVEAADIHAGDQVIEIGPGIGSLTEQLLLAGAKVFAYEVDDSLPEILQNELPKKIGDAPLEDRFKLMLKDVLKANFKEDLAGFFDMSKPIKVVANLPYYITTPIIFALAESDLHFASLTLMMQKEVAERLEAKPGSKEYGPLTISVQTEMDVKVA 196          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_CUPTR (Ribosomal RNA small subunit methyltransferase A OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=rsmA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.141e-18
Identity = 61/163 (37.42%), Postives = 83/163 (50.92%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDI------CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546
            K  GQ+ L +  ++  IV     ++ DV++EIGPG G LT  LLE    +  VELD  +V  L+RR     Y  RL+V  GD L  D     +       V N+PY ISSPL F L+           M QKE   R+VA+PG K + RLS+  Q+   + H+
Sbjct:   13 KRFGQNFLVDDTIIHGIVNAISPQAGDVLVEIGPGLGALTDPLLERIPQMQVVELDRDLVERLRRR-----YGERLQVHAGDALDFDFDKLAVPGRPLRIVGNLPYNISSPLLFHLMEFADHVHDQHFMLQKEVVERMVAEPGSKAFGRLSIMLQVRYYMEHV 170          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_CHLL2 (Ribosomal RNA small subunit methyltransferase A OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=rsmA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.141e-18
Identity = 61/165 (36.97%), Postives = 88/165 (53.33%), Query Frame = 1
Query:   64 ISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDIC-----VANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSH 543
            I+  K  GQ+ L +  +   IV+ +G K  + ILEIGPG G LTK+++EV      VE D ++   ++  +       +L VI+ D LK DL           + NIPY I+SP+ F+LL ++  F  A +M Q E AMR+VA P  K Y  L+V  Q    VS+
Sbjct:   11 IAVKKQLGQNFLTDRNITRKIVRLSGAKPEENILEIGPGFGALTKEIIEVCPSFTVVEKDPKLAAFIRTEYP------QLNVIEADFLKIDLEAVTGARKLRILGNIPYSITSPILFRLLEYRRCFMHATLMMQHEVAMRIVAVPSTKEYGILAVQLQAFFDVSY 169          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_LACAC (Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus acidophilus GN=rsmA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.490e-18
Identity = 61/168 (36.31%), Postives = 93/168 (55.36%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRM--VL--ELQRRFQSTPYSNRLKVIQGDVLKTDLP-----YFDI-----CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537
            K+ GQ+ L +   +  IV+ A I+  D ++EIGPG G+LT++LL  G  V A E+D  +  +L  EL ++      ++R K++  DVLK D       +FD+      VAN+PY I++P+ F L      F    +M QKE A RL A+PG+K Y  L+++ Q    V
Sbjct:   26 KNLGQNFLVDQDAILGIVEAADIQPGDQVIEIGPGIGSLTEQLLLAGAKVFAYEVDDSLPEILHNELPKKIGEQSLNDRFKLLLKDVLKADFQNDLAGFFDMKQPIKVVANLPYYITTPIIFALSESDLHFSSLTLMMQKEVAERLEAKPGNKEYGPLTISVQTEMNV 193          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_GEOKA (Ribosomal RNA small subunit methyltransferase A OS=Geobacillus kaustophilus GN=rsmA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.490e-18
Identity = 60/164 (36.59%), Postives = 88/164 (53.66%), Query Frame = 1
Query:   67 SFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYF----------DICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLH 528
            SF KS GQ+ L +  ++  IV  A I      +EIGPG G LT++L    K V+A E+D R++  L      +PY N +++   DVLK DL              + VAN+PY +++P+  KLL  +   R  ++M QKE A RL A+PG K Y  L++  Q +
Sbjct:   21 SFKKSLGQNFLIDANILRKIVDVADISPDTGAIEIGPGIGALTEQLARRAKKVVAFEIDGRLLPILADTL--SPYDN-VRIFHQDVLKADLHAVIAEELADVSDRMVVANLPYYVTTPIIMKLLTERLPIRGMVVMLQKEVADRLAAKPGTKDYGSLTIAVQYY 181          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_CORGB (Ribosomal RNA small subunit methyltransferase A OS=Corynebacterium glutamicum (strain R) GN=rsmA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.490e-18
Identity = 55/161 (34.16%), Postives = 83/161 (51.55%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQ--STPYSNRLKVIQGDVLKTDLPYFDI----CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVS 540
            K  GQ+ + +P  V  IV  A +   D ++E+GPG G+LT  L+E    V AVE+D R+  EL   FQ  +   +++L ++  D LK      ++     VAN+PY +S P+   +L   P     ++M Q E A RL A PG K+Y   SV    +  V+
Sbjct:   28 KKLGQNFVHDPNTVRRIVAAAELTPDDHVVEVGPGLGSLTLALVESAASVTAVEIDPRLAAELPETFQWRAPALAHKLSIVLKDALKVQQSDMEVQPTALVANLPYNVSVPVLLHMLEEFPTINKVLVMVQAEVADRLAADPGSKIYGVPSVKASFYGPVT 188          
The following BLAST results are available for this feature:
BLAST of DN617688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RSMA_SYNPX1.141e-1839.02Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_PSEPF1.141e-1836.53Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_PROM41.141e-1839.02Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_LEUCK1.141e-1836.81Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_LACH41.141e-1836.26Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_CUPTR1.141e-1837.42Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_CHLL21.141e-1836.97Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_LACAC1.490e-1836.31Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_GEOKA1.490e-1836.59Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_CORGB1.490e-1834.16Ribosomal RNA small subunit methyltransferase A OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I22_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617688 ID=DN617688; Name=DN617688; organism=Citrus sinensis; type=EST; length=548bp
AGGAAGGAGAAAGGAAAGCAGAAAAGTGGACCGTATCAAGGACAAGGACT
AGGAGCAGGAGGTATATCCTTCCACAAATCAAAGGGGCAGCACATTCTGA
AGAACCCTTTGCTTGTGGAGAGCATCGTCCAAAAAGCCGGCATCAAGAGC
ACCGATGTCATTCTTGAGATTGGTCCCGGCACTGGTAATCTCACCAAAAA
GCTTCTGGAAGTTGGCAAGATGGTCATCGCTGTCGAGCTTGACTCTCGTA
TGGTTCTCGAGCTCCAGCGCCGTTTTCAATCCACCCCTTACTCCAACCGT
TTAAAGGTCATTCAGGGTGATGTCCTCAAGACTGATCTTCCCTATTTTGA
TATATGTGTGGCAAACATCCCGTACCAAATCTCCTCCCCACTCACATTCA
AGTTGTTGTTTCACCAACCTGCCTTCAGATGCGCGATTATTATGTTCCAG
AAAGAATTTGCTATGAGACTTGTTGCTCAACCCGGTGACAAGCTCTACTG
TCGTCTTTCTGTGAATACACAACTTCATGCTCGGGTCTCCCACCTCCT
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