DN617688

Overview
NameDN617688
Unique NameDN617688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length548
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_META3 (Probable ribosomal RNA small subunit methyltransferase A OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rsmA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.844e-23
Identity = 66/160 (41.25%), Postives = 95/160 (59.38%), Query Frame = 1
Query:   73 HKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPY--FDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546
            +K  GQ  LK+  +V+  +  A I   D++LEIG G G LTK+L +  K VI +ELD ++ +  +   +  P    +++I  D LK +L    F+  VAN+PYQISSP+TFKLL     F  A++M+Q EFA R+ A  G K Y RLSV+ Q  A V ++
Sbjct:    4 NKKLGQCFLKDKNIVKKAINAANINKNDIVLEIGLGKGILTKELAKQCKKVIVIELDKKLEIFWEDIIKEYP---NVEIIWNDALKVNLKELGFNKVVANLPYQISSPITFKLL--DCDFEVAVLMYQYEFAKRMGAPSGTKEYSRLSVSVQYRAVVDYV 158          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_METM7 (Probable ribosomal RNA small subunit methyltransferase A OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rsmA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.632e-23
Identity = 64/162 (39.51%), Postives = 94/162 (58.02%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRM---VLELQRRFQSTPYSNRLKVIQGDVLKTDLPY--FDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546
            K  GQ  LK+   V+  + +A +   D++LE+G G G LTK+L ++ K V  +ELD R+     E+   F++      +++I  D LK DL    F+  VAN+PYQISSP+TFK L  +  F  A++M+Q EFA R+  +P  K Y RLSV  Q +A V  +
Sbjct:    5 KKLGQCFLKDKNFVKKAINRAELTDKDIVLEVGLGEGALTKELAKIAKKVYVIELDERLKPFADEITSEFEN------VEIIWSDALKVDLKTLGFNKIVANLPYQISSPITFKFL--EEDFEVAVLMYQYEFAKRMAGKPDTKEYSRLSVAVQYNADVEFI 158          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_METM6 (Probable ribosomal RNA small subunit methyltransferase A OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rsmA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.632e-23
Identity = 65/162 (40.12%), Postives = 94/162 (58.02%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRM---VLELQRRFQSTPYSNRLKVIQGDVLKTDLPY--FDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546
            K  GQ  LK+   V+  + +A I   D++LE+G G G LTK+L ++ K V  +ELD R+     E+   F++      +++I  D LK DL    F+  VAN+PYQISSP+TFK L  +  F  A++M+Q EFA R+  +P  K Y RLSV  Q +A V  +
Sbjct:    5 KKLGQCFLKDKNFVKKAINRAEITDKDIVLEVGLGEGALTKELAKLAKKVYVIELDERLKPFADEITSEFEN------VEIIWSDALKVDLKNLGFNKIVANLPYQISSPITFKFL--EEDFETAVLMYQYEFAKRMAGKPDTKEYSRLSVAVQYNADVEFI 158          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_METM5 (Probable ribosomal RNA small subunit methyltransferase A OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rsmA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.632e-23
Identity = 66/162 (40.74%), Postives = 94/162 (58.02%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRM---VLELQRRFQSTPYSNRLKVIQGDVLKTDLPY--FDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546
            K  GQ  LK+   V+  + +A I + DV+LE+G G G LTK+L ++ K V  +ELD R+     E+   F++      +++I  D LK DL    F+  VAN+PYQISSP+TFK L     F  A++M+Q EFA R+  +P  K Y RLSV  Q +A V  +
Sbjct:    5 KKLGQCFLKDKNFVKKAINRAEITNKDVVLELGLGEGALTKELAKIAKKVYVIELDERLKPFADEITSEFEN------VEIIWSDALKVDLKNLGFNKIVANLPYQISSPITFKFL--DVDFETAVLMYQYEFAKRMAGKPDTKEYSRLSVAVQYNADVEFI 158          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_METVS (Probable ribosomal RNA small subunit methyltransferase A OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rsmA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 9.968e-23
Identity = 65/166 (39.16%), Postives = 95/166 (57.23%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRL-------KVIQGDVLKTDLPY--FDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546
            K  GQ  LK+   V+  ++ A I   D++LE+G G G LTK+L ++ K V  +ELD R+           P++N++       KVI  D LK DL    F+  VAN+PYQISSP+TFK L  +  F  A++M+Q EFA R++ +P    Y RLSV+ Q ++ V  +
Sbjct:    5 KKLGQCFLKDKNFVKKAIKSADITENDIVLEVGLGEGALTKELAKLAKFVYVIELDMRL----------EPFANQIMSEFKNVKVIWNDALKVDLKELGFNKIVANLPYQISSPITFKFL--ENDFDVAVLMYQYEFAKRMIGKPDTDEYSRLSVSIQYNSDVEFI 158          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_METST (Probable ribosomal RNA small subunit methyltransferase A OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rsmA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.221e-22
Identity = 63/150 (42.00%), Postives = 92/150 (61.33%), Query Frame = 1
Query:   64 ISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSV 513
            I    +K Q+ L +   +  I++ A I+  + ILEIG G G LT  + +  K VIA+E D  +V  L+++      +N +++I+ D LK D P FD  V+N+PYQISSP+TFKLL  +  F+ AI+M+Q EFA R+ A+P    Y RLSV
Sbjct:   13 IKLDTNKSQNYLIDDNKLNIILENADIQDNETILEIGAGIGTLTLPMAKKAKKVIAIEKDPIIVDILKQQIIKEKLTN-IEIIKDDALKVDFPKFDKVVSNLPYQISSPVTFKLL--EYPFKKAILMYQLEFAKRMQAKPDTHEYSRLSV 159          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_METJA (Probable ribosomal RNA small subunit methyltransferase A OS=Methanocaldococcus jannaschii GN=rsmA PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.221e-22
Identity = 69/163 (42.33%), Postives = 91/163 (55.83%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLK-------VIQGDVLKTDLPYFDI--CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537
            K  GQ  L +   V   V+ A +   DV+LEIG G G LT++L +  K V  +E+D  +           PY+N+LK       +I GD LK DL   D    VAN+PYQISSP+TFKL+  +  F  A++M+Q EFA R+VA+ G K Y RLSV  Q  A V
Sbjct:    6 KKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSL----------EPYANKLKELYNNIEIIWGDALKVDLNKLDFNKVVANLPYQISSPITFKLI--KRGFDLAVLMYQYEFAKRMVAKEGTKDYGRLSVAVQSRADV 156          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_THEEB (Ribosomal RNA small subunit methyltransferase A OS=Thermosynechococcus elongatus (strain BP-1) GN=rsmA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.900e-22
Identity = 68/163 (41.72%), Postives = 92/163 (56.44%), Query Frame = 1
Query:   64 ISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYF--DICVANIPYQISSPLTFKLLF-----HQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHA 531
            I   K  GQH L++  ++  I+  A +   D +LEIGPG G LT+ LL  G  V+AVELD  +  +L+R+F     S R ++I+GD+L+ DL     +  VANIPY I+ PL   LL       +PAF   I++ QKE   RL+A PG K Y  LSV  Q  A
Sbjct:    2 IRARKRFGQHWLRSEAILAQIIAAAELHPGDRVLEIGPGRGALTRPLLVSGAEVVAVELDRDLCGQLRRQFD----SERFQLIEGDILRLDLAPLGCNKVVANIPYNITGPLLGHLLGSIARPRRPAFERLILLVQKEIGDRLMASPGSKAYGALSVRVQFLA 160          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_CYAP8 (Ribosomal RNA small subunit methyltransferase A OS=Cyanothece sp. (strain PCC 8801) GN=rsmA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 4.947e-22
Identity = 63/172 (36.63%), Postives = 98/172 (56.98%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL-------PYF---DICVANIPYQISSPLTFKLLF-----HQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546
            K   QH L++   ++ I++ A +  +D++LEIGPGTG LT++LL + + ++AVELD  +   L + F +    N   +++GD+L  DL       P F   +  VANIPY I+SP+  KLL        P++   +++ QKE A R+VA P  K Y  LSV TQ  A+  ++
Sbjct:    6 KRFAQHWLRSETALDQIIEAAQLNMSDLVLEIGPGTGILTRRLLPLVQSIVAVELDRDLCYRLAKSFGN---FNHFLLLEGDILSLDLTTQLEQFPQFQPINKVVANIPYNITSPILEKLLGSIAHPQHPSYELIVLLMQKEVAQRIVASPQSKAYGALSVRTQYLAQCDYI 174          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_MAGSM (Ribosomal RNA small subunit methyltransferase A OS=Magnetococcus sp. (strain MC-1) GN=rsmA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.461e-22
Identity = 66/167 (39.52%), Postives = 88/167 (52.69%), Query Frame = 1
Query:   64 ISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDI-------CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSH 543
            +S +K  GQ+ L +P +   IV  AGIK+ D +LEIGPG G+LT  LL+    V AVE D +++  L+           L +++ D L  D               AN+PY IS+PL   LL H  AF C  +MFQKE A RL A+PG K Y  L+V   L A + H
Sbjct:   16 LSPNKRFGQNFLVDPSVAPRIVALAGIKAGDRVLEIGPGVGSLTIPLLQKAGAVTAVEKDRKLLPLLRVEAAGV---GALTLVEEDALLVDYTALAQQLGGPLKLAANLPYNISTPLMVHLLDHHAAFECMALMFQKEVAQRLAAEPGSKAYGALTVQCALWAEIRH 179          
The following BLAST results are available for this feature:
BLAST of DN617688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RSMA_META35.844e-2341.25Probable ribosomal RNA small subunit methyltransfe... [more]
RSMA_METM77.632e-2339.51Probable ribosomal RNA small subunit methyltransfe... [more]
RSMA_METM67.632e-2340.12Probable ribosomal RNA small subunit methyltransfe... [more]
RSMA_METM57.632e-2340.74Probable ribosomal RNA small subunit methyltransfe... [more]
RSMA_METVS9.968e-2339.16Probable ribosomal RNA small subunit methyltransfe... [more]
RSMA_METST2.221e-2242.00Probable ribosomal RNA small subunit methyltransfe... [more]
RSMA_METJA2.221e-2242.33Probable ribosomal RNA small subunit methyltransfe... [more]
RSMA_THEEB2.900e-2241.72Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_CYAP84.947e-2236.63Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_MAGSM6.461e-2239.52Ribosomal RNA small subunit methyltransferase A OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I22_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617688 ID=DN617688; Name=DN617688; organism=Citrus sinensis; type=EST; length=548bp
AGGAAGGAGAAAGGAAAGCAGAAAAGTGGACCGTATCAAGGACAAGGACT
AGGAGCAGGAGGTATATCCTTCCACAAATCAAAGGGGCAGCACATTCTGA
AGAACCCTTTGCTTGTGGAGAGCATCGTCCAAAAAGCCGGCATCAAGAGC
ACCGATGTCATTCTTGAGATTGGTCCCGGCACTGGTAATCTCACCAAAAA
GCTTCTGGAAGTTGGCAAGATGGTCATCGCTGTCGAGCTTGACTCTCGTA
TGGTTCTCGAGCTCCAGCGCCGTTTTCAATCCACCCCTTACTCCAACCGT
TTAAAGGTCATTCAGGGTGATGTCCTCAAGACTGATCTTCCCTATTTTGA
TATATGTGTGGCAAACATCCCGTACCAAATCTCCTCCCCACTCACATTCA
AGTTGTTGTTTCACCAACCTGCCTTCAGATGCGCGATTATTATGTTCCAG
AAAGAATTTGCTATGAGACTTGTTGCTCAACCCGGTGACAAGCTCTACTG
TCGTCTTTCTGTGAATACACAACTTCATGCTCGGGTCTCCCACCTCCT
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