DN617688
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_META3 (Probable ribosomal RNA small subunit methyltransferase A OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rsmA PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 5.844e-23 Identity = 66/160 (41.25%), Postives = 95/160 (59.38%), Query Frame = 1 Query: 73 HKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPY--FDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546 +K GQ LK+ +V+ + A I D++LEIG G G LTK+L + K VI +ELD ++ + + + P +++I D LK +L F+ VAN+PYQISSP+TFKLL F A++M+Q EFA R+ A G K Y RLSV+ Q A V ++ Sbjct: 4 NKKLGQCFLKDKNIVKKAINAANINKNDIVLEIGLGKGILTKELAKQCKKVIVIELDKKLEIFWEDIIKEYP---NVEIIWNDALKVNLKELGFNKVVANLPYQISSPITFKLL--DCDFEVAVLMYQYEFAKRMGAPSGTKEYSRLSVSVQYRAVVDYV 158
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_METM7 (Probable ribosomal RNA small subunit methyltransferase A OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rsmA PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 7.632e-23 Identity = 64/162 (39.51%), Postives = 94/162 (58.02%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRM---VLELQRRFQSTPYSNRLKVIQGDVLKTDLPY--FDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546 K GQ LK+ V+ + +A + D++LE+G G G LTK+L ++ K V +ELD R+ E+ F++ +++I D LK DL F+ VAN+PYQISSP+TFK L + F A++M+Q EFA R+ +P K Y RLSV Q +A V + Sbjct: 5 KKLGQCFLKDKNFVKKAINRAELTDKDIVLEVGLGEGALTKELAKIAKKVYVIELDERLKPFADEITSEFEN------VEIIWSDALKVDLKTLGFNKIVANLPYQISSPITFKFL--EEDFEVAVLMYQYEFAKRMAGKPDTKEYSRLSVAVQYNADVEFI 158
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_METM6 (Probable ribosomal RNA small subunit methyltransferase A OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rsmA PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 7.632e-23 Identity = 65/162 (40.12%), Postives = 94/162 (58.02%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRM---VLELQRRFQSTPYSNRLKVIQGDVLKTDLPY--FDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546 K GQ LK+ V+ + +A I D++LE+G G G LTK+L ++ K V +ELD R+ E+ F++ +++I D LK DL F+ VAN+PYQISSP+TFK L + F A++M+Q EFA R+ +P K Y RLSV Q +A V + Sbjct: 5 KKLGQCFLKDKNFVKKAINRAEITDKDIVLEVGLGEGALTKELAKLAKKVYVIELDERLKPFADEITSEFEN------VEIIWSDALKVDLKNLGFNKIVANLPYQISSPITFKFL--EEDFETAVLMYQYEFAKRMAGKPDTKEYSRLSVAVQYNADVEFI 158
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_METM5 (Probable ribosomal RNA small subunit methyltransferase A OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rsmA PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 7.632e-23 Identity = 66/162 (40.74%), Postives = 94/162 (58.02%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRM---VLELQRRFQSTPYSNRLKVIQGDVLKTDLPY--FDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546 K GQ LK+ V+ + +A I + DV+LE+G G G LTK+L ++ K V +ELD R+ E+ F++ +++I D LK DL F+ VAN+PYQISSP+TFK L F A++M+Q EFA R+ +P K Y RLSV Q +A V + Sbjct: 5 KKLGQCFLKDKNFVKKAINRAEITNKDVVLELGLGEGALTKELAKIAKKVYVIELDERLKPFADEITSEFEN------VEIIWSDALKVDLKNLGFNKIVANLPYQISSPITFKFL--DVDFETAVLMYQYEFAKRMAGKPDTKEYSRLSVAVQYNADVEFI 158
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_METVS (Probable ribosomal RNA small subunit methyltransferase A OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rsmA PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 9.968e-23 Identity = 65/166 (39.16%), Postives = 95/166 (57.23%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRL-------KVIQGDVLKTDLPY--FDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546 K GQ LK+ V+ ++ A I D++LE+G G G LTK+L ++ K V +ELD R+ P++N++ KVI D LK DL F+ VAN+PYQISSP+TFK L + F A++M+Q EFA R++ +P Y RLSV+ Q ++ V + Sbjct: 5 KKLGQCFLKDKNFVKKAIKSADITENDIVLEVGLGEGALTKELAKLAKFVYVIELDMRL----------EPFANQIMSEFKNVKVIWNDALKVDLKELGFNKIVANLPYQISSPITFKFL--ENDFDVAVLMYQYEFAKRMIGKPDTDEYSRLSVSIQYNSDVEFI 158
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_METST (Probable ribosomal RNA small subunit methyltransferase A OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rsmA PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 2.221e-22 Identity = 63/150 (42.00%), Postives = 92/150 (61.33%), Query Frame = 1 Query: 64 ISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSV 513 I +K Q+ L + + I++ A I+ + ILEIG G G LT + + K VIA+E D +V L+++ +N +++I+ D LK D P FD V+N+PYQISSP+TFKLL + F+ AI+M+Q EFA R+ A+P Y RLSV Sbjct: 13 IKLDTNKSQNYLIDDNKLNIILENADIQDNETILEIGAGIGTLTLPMAKKAKKVIAIEKDPIIVDILKQQIIKEKLTN-IEIIKDDALKVDFPKFDKVVSNLPYQISSPVTFKLL--EYPFKKAILMYQLEFAKRMQAKPDTHEYSRLSV 159
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_METJA (Probable ribosomal RNA small subunit methyltransferase A OS=Methanocaldococcus jannaschii GN=rsmA PE=1 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 2.221e-22 Identity = 69/163 (42.33%), Postives = 91/163 (55.83%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLK-------VIQGDVLKTDLPYFDI--CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537 K GQ L + V V+ A + DV+LEIG G G LT++L + K V +E+D + PY+N+LK +I GD LK DL D VAN+PYQISSP+TFKL+ + F A++M+Q EFA R+VA+ G K Y RLSV Q A V Sbjct: 6 KKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSL----------EPYANKLKELYNNIEIIWGDALKVDLNKLDFNKVVANLPYQISSPITFKLI--KRGFDLAVLMYQYEFAKRMVAKEGTKDYGRLSVAVQSRADV 156
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_THEEB (Ribosomal RNA small subunit methyltransferase A OS=Thermosynechococcus elongatus (strain BP-1) GN=rsmA PE=3 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 2.900e-22 Identity = 68/163 (41.72%), Postives = 92/163 (56.44%), Query Frame = 1 Query: 64 ISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYF--DICVANIPYQISSPLTFKLLF-----HQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHA 531 I K GQH L++ ++ I+ A + D +LEIGPG G LT+ LL G V+AVELD + +L+R+F S R ++I+GD+L+ DL + VANIPY I+ PL LL +PAF I++ QKE RL+A PG K Y LSV Q A Sbjct: 2 IRARKRFGQHWLRSEAILAQIIAAAELHPGDRVLEIGPGRGALTRPLLVSGAEVVAVELDRDLCGQLRRQFD----SERFQLIEGDILRLDLAPLGCNKVVANIPYNITGPLLGHLLGSIARPRRPAFERLILLVQKEIGDRLMASPGSKAYGALSVRVQFLA 160
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_CYAP8 (Ribosomal RNA small subunit methyltransferase A OS=Cyanothece sp. (strain PCC 8801) GN=rsmA PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 4.947e-22 Identity = 63/172 (36.63%), Postives = 98/172 (56.98%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL-------PYF---DICVANIPYQISSPLTFKLLF-----HQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546 K QH L++ ++ I++ A + +D++LEIGPGTG LT++LL + + ++AVELD + L + F + N +++GD+L DL P F + VANIPY I+SP+ KLL P++ +++ QKE A R+VA P K Y LSV TQ A+ ++ Sbjct: 6 KRFAQHWLRSETALDQIIEAAQLNMSDLVLEIGPGTGILTRRLLPLVQSIVAVELDRDLCYRLAKSFGN---FNHFLLLEGDILSLDLTTQLEQFPQFQPINKVVANIPYNITSPILEKLLGSIAHPQHPSYELIVLLMQKEVAQRIVASPQSKAYGALSVRTQYLAQCDYI 174
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_MAGSM (Ribosomal RNA small subunit methyltransferase A OS=Magnetococcus sp. (strain MC-1) GN=rsmA PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 6.461e-22 Identity = 66/167 (39.52%), Postives = 88/167 (52.69%), Query Frame = 1 Query: 64 ISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDI-------CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSH 543 +S +K GQ+ L +P + IV AGIK+ D +LEIGPG G+LT LL+ V AVE D +++ L+ L +++ D L D AN+PY IS+PL LL H AF C +MFQKE A RL A+PG K Y L+V L A + H Sbjct: 16 LSPNKRFGQNFLVDPSVAPRIVALAGIKAGDRVLEIGPGVGSLTIPLLQKAGAVTAVEKDRKLLPLLRVEAAGV---GALTLVEEDALLVDYTALAQQLGGPLKLAANLPYNISTPLMVHLLDHHAAFECMALMFQKEVAQRLAAEPGSKAYGALTVQCALWAEIRH 179 The following BLAST results are available for this feature:
BLAST of DN617688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DN617688 ID=DN617688; Name=DN617688; organism=Citrus sinensis; type=EST; length=548bpback to top |