DN617688

Overview
NameDN617688
Unique NameDN617688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length548
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_CYAA5 (Ribosomal RNA small subunit methyltransferase A OS=Cyanothece sp. (strain ATCC 51142) GN=rsmA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.461e-22
Identity = 66/172 (38.37%), Postives = 100/172 (58.14%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL-------PYF---DICVANIPYQISSPLTFKLLFH-----QPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546
            K   QH L++   +E I+Q A +K +D +LEIGPGTG LT++LL + + +IAVELD  +  +L    +S    +   ++QGD+LK D+       P F   +  VANIPY I+SP+  KLL       QP++   +++ QKE A R++A PG K Y  LS+  Q  A  +++
Sbjct:    6 KRFAQHWLRSETALEQIIQAANLKKSDRLLEIGPGTGILTRRLLPLVQSLIAVELDWDLCKKL---VKSLGDEDNFLLLQGDILKLDIATEAQQFPKFLPINKVVANIPYNITSPILDKLLGRISSPKQPSYDLIVLLIQKEVAQRIIAYPGSKNYGALSIKMQYLADCNYI 174          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_GLOVI (Ribosomal RNA small subunit methyltransferase A OS=Gloeobacter violaceus GN=rsmA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 8.439e-22
Identity = 65/154 (42.21%), Postives = 90/154 (58.44%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPY-FDICVANIPYQISSPLTFKLL--FHQP--AFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQ 522
            K  GQH L +  +++ IV  AG+   D +LEIGPG G+LT +LL     V+AVE+D R V +LQR+F       R  +++GD+L+  LP   ++ VANIPY IS P+  KL     QP   FR  +++ QKE   R+ A PG + Y  LSV  Q
Sbjct:    5 KRFGQHWLNDGAVLDRIVAAAGLACGDRVLEIGPGLGSLTARLLR-QVPVVAVEIDRRAVAQLQRQFGG---DKRFVLVEGDILREALPEPANVVVANIPYNISGPILAKLTGSLAQPIRRFRTIVLLVQKELGQRIAAPPGSRTYGALSVRLQ 154          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_HALWD (Probable ribosomal RNA small subunit methyltransferase A OS=Haloquadratum walsbyi (strain DSM 16790) GN=rsmA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.102e-21
Identity = 64/152 (42.11%), Postives = 87/152 (57.24%), Query Frame = 1
Query:   88 QHILKNPLLVESIVQKAGIKSTDV--ILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537
            QH L +  +++ I     + STD   ILEIG GTG LT +LL VG  V  +E D+ +   L+  F       RL +I+GD L+  LP F  C++N+PY ISS + F+LL   PA    I+M Q+EF  R+ A PG   Y RLSV+ Q +A V
Sbjct:   43 QHFLIDDRVLDRIPTYL-LDSTDTTHILEIGAGTGALTDRLLAVGDTVTVIERDATLAAFLREEFAVMIDDGRLNIIEGDALEVTLPAFTTCISNLPYGISSEILFELL---PADCPLIVMVQREFGERMAADPGTDAYGRLSVSAQHYATV 190          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_HALSA (Probable ribosomal RNA small subunit methyltransferase A OS=Halobacterium salinarium GN=rsmA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.439e-21
Identity = 63/151 (41.72%), Postives = 84/151 (55.63%), Query Frame = 1
Query:   88 QHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVS 540
            QH L +  +++ I   A       +LEIG GTG LT +LL V   V AVE D      L+  F     +  L V+ GD L  DLP F   V+N+PY ++S +TF+LL   PA +  ++M+Q EFA R+ A PG   Y RLSV TQ +A VS
Sbjct:   23 QHFLIDDRVLDRIPTYADGFDRGHVLEIGAGTGALTDRLLSVADRVTAVERDESYASFLREEFADAIAAGDLDVVAGDALAVDLPAFTCAVSNLPYGVASEVTFRLL---PAGKPMVLMYQLEFAERMAADPGTSEYGRLSVATQHYADVS 170          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_HALS3 (Probable ribosomal RNA small subunit methyltransferase A OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rsmA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.439e-21
Identity = 63/151 (41.72%), Postives = 84/151 (55.63%), Query Frame = 1
Query:   88 QHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVS 540
            QH L +  +++ I   A       +LEIG GTG LT +LL V   V AVE D      L+  F     +  L V+ GD L  DLP F   V+N+PY ++S +TF+LL   PA +  ++M+Q EFA R+ A PG   Y RLSV TQ +A VS
Sbjct:   23 QHFLIDDRVLDRIPTYADGFDRGHVLEIGAGTGALTDRLLSVADRVTAVERDESYASFLREEFADAIAAGDLDVVAGDALAVDLPAFTCAVSNLPYGVASEVTFRLL---PAGKPMVLMYQLEFAERMAADPGTSEYGRLSVATQHYADVS 170          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_METCA (Ribosomal RNA small subunit methyltransferase A OS=Methylococcus capsulatus GN=rsmA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.188e-21
Identity = 63/162 (38.89%), Postives = 87/162 (53.70%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDI-----CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546
            K  GQ+ L++P +++ IV   G   +D ++EIGPG G LT++LL+ G  + A+ELD  +V  L+RRF       RL++ +GD +K DL           V N+PY IS+PL F L            M QKE   RL A  GD  Y RLSV   L+ +  HL
Sbjct:    7 KRFGQNFLRDPGVIQEIVAAVGPAPSDRLVEIGPGEGVLTRELLQSGACLEAIELDRDLVAALKRRFAGV---GRLRIHEGDAMKFDLRTIATGERLRVVGNLPYNISTPLLFHLFDQIDVIEDMHFMLQKEVVDRLCAGAGDDHYGRLSVMAALYCQAQHL 165          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_LACDB (Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) GN=rsmA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.188e-21
Identity = 65/168 (38.69%), Postives = 89/168 (52.98%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRM----VLELQRRFQSTPYSNRLKVIQGDVLKTDLP-----YFDIC-----VANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537
            K+ GQ+ L +   V+ IV+ AGI+  D ++E+GPG G+LT++LL  G  V A E+D  +      EL  +        R K+I  DVLK D       +FD+      VAN+PY I++P+ F LL     F    +M QKE A RL AQPG K Y  LS+  Q    V
Sbjct:   26 KNLGQNFLVDLDAVQGIVRAAGIEPGDQVVEVGPGIGSLTEQLLLAGGKVAAYEVDQSLPEILANELPEKVDGQDLDQRFKLIMKDVLKADFATDLAGFFDLSKPVKVVANLPYYITTPIIFNLLESSLDFTSLTLMMQKEVAERLAAQPGSKAYGPLSIAVQTQMSV 193          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_LACDA (Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) GN=rsmA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.188e-21
Identity = 65/168 (38.69%), Postives = 89/168 (52.98%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRM----VLELQRRFQSTPYSNRLKVIQGDVLKTDLP-----YFDIC-----VANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537
            K+ GQ+ L +   V+ IV+ AGI+  D ++E+GPG G+LT++LL  G  V A E+D  +      EL  +        R K+I  DVLK D       +FD+      VAN+PY I++P+ F LL     F    +M QKE A RL AQPG K Y  LS+  Q    V
Sbjct:   26 KNLGQNFLVDLDAVQGIVRAAGIEPGDQVVEVGPGIGSLTEQLLLAGGKVAAYEVDQSLPEILANELPEKVDGQDLDQRFKLIMKDVLKADFATDLAGFFDLSKPVKVVANLPYYITTPIIFNLLESSLDFTSLTLMMQKEVAERLAAQPGSKAYGPLSIAVQTQMSV 193          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_SYNJA (Ribosomal RNA small subunit methyltransferase A OS=Synechococcus sp. (strain JA-3-3Ab) GN=rsmA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.470e-21
Identity = 67/158 (42.41%), Postives = 92/158 (58.23%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGI----KSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL-PYFDICVANIPYQISSPLTFKLLFH--QPA--FRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQ 522
            K  GQH LK+P + E+IV+ A +    +    +LEIGPGTG LT++LL  G  V+AVE+D  +   LQ+RF   P   R  +++GD L+  L P   + VANIPY ++ P+  K+L    QP   F   ++M QKE A RL A PG K Y  LSV  +
Sbjct:    6 KRFGQHWLKDPAVHEAIVRAAQLPPPQRDPAWVLEIGPGTGQLTQRLLAQGVHVVAVEIDRDLCRLLQKRFADQP---RFHLVEGDFLRLPLPPQPRLLVANIPYNLTGPILEKVLGSPAQPVRQFERIVLMVQKELAERLQAGPGSKAYGALSVRVR 160          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_PROM1 (Ribosomal RNA small subunit methyltransferase A OS=Prochlorococcus marinus (strain NATL1A) GN=rsmA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 7.144e-21
Identity = 61/164 (37.20%), Postives = 96/164 (58.54%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLE-VGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP-----YFDICVANIPYQISSPLTFKLLFH-----QPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHAR 534
            K  GQH LK+  +++ IV+ A +   D +LE+GPG G LT+KL+E   K + A+ELD  +V+ L++RF    + N+  + +GD+L   L        +  VANIPY I+ PL  +L+       + +F   +++ QKE A RL+A+PG+  +  LSV  QL A+
Sbjct:   16 KRFGQHWLKDQGVLDQIVKAAELNPEDCVLEVGPGKGALTEKLIESQAKFIQAIELDRDLVIGLKKRFN---HQNKFSLREGDILSAPLDAENGVTINKVVANIPYNITGPLLKRLIGELRKAPENSFETLVLLMQKEVAQRLLARPGNSNFSALSVRVQLLAK 176          
The following BLAST results are available for this feature:
BLAST of DN617688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RSMA_CYAA56.461e-2238.37Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_GLOVI8.439e-2242.21Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_HALWD1.102e-2142.11Probable ribosomal RNA small subunit methyltransfe... [more]
RSMA_HALSA1.439e-2141.72Probable ribosomal RNA small subunit methyltransfe... [more]
RSMA_HALS31.439e-2141.72Probable ribosomal RNA small subunit methyltransfe... [more]
RSMA_METCA4.188e-2138.89Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_LACDB4.188e-2138.69Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_LACDA4.188e-2138.69Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_SYNJA5.470e-2142.41Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_PROM17.144e-2137.20Ribosomal RNA small subunit methyltransferase A OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I22_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617688 ID=DN617688; Name=DN617688; organism=Citrus sinensis; type=EST; length=548bp
AGGAAGGAGAAAGGAAAGCAGAAAAGTGGACCGTATCAAGGACAAGGACT
AGGAGCAGGAGGTATATCCTTCCACAAATCAAAGGGGCAGCACATTCTGA
AGAACCCTTTGCTTGTGGAGAGCATCGTCCAAAAAGCCGGCATCAAGAGC
ACCGATGTCATTCTTGAGATTGGTCCCGGCACTGGTAATCTCACCAAAAA
GCTTCTGGAAGTTGGCAAGATGGTCATCGCTGTCGAGCTTGACTCTCGTA
TGGTTCTCGAGCTCCAGCGCCGTTTTCAATCCACCCCTTACTCCAACCGT
TTAAAGGTCATTCAGGGTGATGTCCTCAAGACTGATCTTCCCTATTTTGA
TATATGTGTGGCAAACATCCCGTACCAAATCTCCTCCCCACTCACATTCA
AGTTGTTGTTTCACCAACCTGCCTTCAGATGCGCGATTATTATGTTCCAG
AAAGAATTTGCTATGAGACTTGTTGCTCAACCCGGTGACAAGCTCTACTG
TCGTCTTTCTGTGAATACACAACTTCATGCTCGGGTCTCCCACCTCCT
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