DN617688
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_CYAA5 (Ribosomal RNA small subunit methyltransferase A OS=Cyanothece sp. (strain ATCC 51142) GN=rsmA PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 6.461e-22 Identity = 66/172 (38.37%), Postives = 100/172 (58.14%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL-------PYF---DICVANIPYQISSPLTFKLLFH-----QPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546 K QH L++ +E I+Q A +K +D +LEIGPGTG LT++LL + + +IAVELD + +L +S + ++QGD+LK D+ P F + VANIPY I+SP+ KLL QP++ +++ QKE A R++A PG K Y LS+ Q A +++ Sbjct: 6 KRFAQHWLRSETALEQIIQAANLKKSDRLLEIGPGTGILTRRLLPLVQSLIAVELDWDLCKKL---VKSLGDEDNFLLLQGDILKLDIATEAQQFPKFLPINKVVANIPYNITSPILDKLLGRISSPKQPSYDLIVLLIQKEVAQRIIAYPGSKNYGALSIKMQYLADCNYI 174
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_GLOVI (Ribosomal RNA small subunit methyltransferase A OS=Gloeobacter violaceus GN=rsmA PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 8.439e-22 Identity = 65/154 (42.21%), Postives = 90/154 (58.44%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPY-FDICVANIPYQISSPLTFKLL--FHQP--AFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQ 522 K GQH L + +++ IV AG+ D +LEIGPG G+LT +LL V+AVE+D R V +LQR+F R +++GD+L+ LP ++ VANIPY IS P+ KL QP FR +++ QKE R+ A PG + Y LSV Q Sbjct: 5 KRFGQHWLNDGAVLDRIVAAAGLACGDRVLEIGPGLGSLTARLLR-QVPVVAVEIDRRAVAQLQRQFGG---DKRFVLVEGDILREALPEPANVVVANIPYNISGPILAKLTGSLAQPIRRFRTIVLLVQKELGQRIAAPPGSRTYGALSVRLQ 154
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_HALWD (Probable ribosomal RNA small subunit methyltransferase A OS=Haloquadratum walsbyi (strain DSM 16790) GN=rsmA PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.102e-21 Identity = 64/152 (42.11%), Postives = 87/152 (57.24%), Query Frame = 1 Query: 88 QHILKNPLLVESIVQKAGIKSTDV--ILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537 QH L + +++ I + STD ILEIG GTG LT +LL VG V +E D+ + L+ F RL +I+GD L+ LP F C++N+PY ISS + F+LL PA I+M Q+EF R+ A PG Y RLSV+ Q +A V Sbjct: 43 QHFLIDDRVLDRIPTYL-LDSTDTTHILEIGAGTGALTDRLLAVGDTVTVIERDATLAAFLREEFAVMIDDGRLNIIEGDALEVTLPAFTTCISNLPYGISSEILFELL---PADCPLIVMVQREFGERMAADPGTDAYGRLSVSAQHYATV 190
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_HALSA (Probable ribosomal RNA small subunit methyltransferase A OS=Halobacterium salinarium GN=rsmA PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.439e-21 Identity = 63/151 (41.72%), Postives = 84/151 (55.63%), Query Frame = 1 Query: 88 QHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVS 540 QH L + +++ I A +LEIG GTG LT +LL V V AVE D L+ F + L V+ GD L DLP F V+N+PY ++S +TF+LL PA + ++M+Q EFA R+ A PG Y RLSV TQ +A VS Sbjct: 23 QHFLIDDRVLDRIPTYADGFDRGHVLEIGAGTGALTDRLLSVADRVTAVERDESYASFLREEFADAIAAGDLDVVAGDALAVDLPAFTCAVSNLPYGVASEVTFRLL---PAGKPMVLMYQLEFAERMAADPGTSEYGRLSVATQHYADVS 170
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_HALS3 (Probable ribosomal RNA small subunit methyltransferase A OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rsmA PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.439e-21 Identity = 63/151 (41.72%), Postives = 84/151 (55.63%), Query Frame = 1 Query: 88 QHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVS 540 QH L + +++ I A +LEIG GTG LT +LL V V AVE D L+ F + L V+ GD L DLP F V+N+PY ++S +TF+LL PA + ++M+Q EFA R+ A PG Y RLSV TQ +A VS Sbjct: 23 QHFLIDDRVLDRIPTYADGFDRGHVLEIGAGTGALTDRLLSVADRVTAVERDESYASFLREEFADAIAAGDLDVVAGDALAVDLPAFTCAVSNLPYGVASEVTFRLL---PAGKPMVLMYQLEFAERMAADPGTSEYGRLSVATQHYADVS 170
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_METCA (Ribosomal RNA small subunit methyltransferase A OS=Methylococcus capsulatus GN=rsmA PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 4.188e-21 Identity = 63/162 (38.89%), Postives = 87/162 (53.70%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDI-----CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546 K GQ+ L++P +++ IV G +D ++EIGPG G LT++LL+ G + A+ELD +V L+RRF RL++ +GD +K DL V N+PY IS+PL F L M QKE RL A GD Y RLSV L+ + HL Sbjct: 7 KRFGQNFLRDPGVIQEIVAAVGPAPSDRLVEIGPGEGVLTRELLQSGACLEAIELDRDLVAALKRRFAGV---GRLRIHEGDAMKFDLRTIATGERLRVVGNLPYNISTPLLFHLFDQIDVIEDMHFMLQKEVVDRLCAGAGDDHYGRLSVMAALYCQAQHL 165
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_LACDB (Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) GN=rsmA PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 4.188e-21 Identity = 65/168 (38.69%), Postives = 89/168 (52.98%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRM----VLELQRRFQSTPYSNRLKVIQGDVLKTDLP-----YFDIC-----VANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537 K+ GQ+ L + V+ IV+ AGI+ D ++E+GPG G+LT++LL G V A E+D + EL + R K+I DVLK D +FD+ VAN+PY I++P+ F LL F +M QKE A RL AQPG K Y LS+ Q V Sbjct: 26 KNLGQNFLVDLDAVQGIVRAAGIEPGDQVVEVGPGIGSLTEQLLLAGGKVAAYEVDQSLPEILANELPEKVDGQDLDQRFKLIMKDVLKADFATDLAGFFDLSKPVKVVANLPYYITTPIIFNLLESSLDFTSLTLMMQKEVAERLAAQPGSKAYGPLSIAVQTQMSV 193
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_LACDA (Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) GN=rsmA PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 4.188e-21 Identity = 65/168 (38.69%), Postives = 89/168 (52.98%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRM----VLELQRRFQSTPYSNRLKVIQGDVLKTDLP-----YFDIC-----VANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537 K+ GQ+ L + V+ IV+ AGI+ D ++E+GPG G+LT++LL G V A E+D + EL + R K+I DVLK D +FD+ VAN+PY I++P+ F LL F +M QKE A RL AQPG K Y LS+ Q V Sbjct: 26 KNLGQNFLVDLDAVQGIVRAAGIEPGDQVVEVGPGIGSLTEQLLLAGGKVAAYEVDQSLPEILANELPEKVDGQDLDQRFKLIMKDVLKADFATDLAGFFDLSKPVKVVANLPYYITTPIIFNLLESSLDFTSLTLMMQKEVAERLAAQPGSKAYGPLSIAVQTQMSV 193
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_SYNJA (Ribosomal RNA small subunit methyltransferase A OS=Synechococcus sp. (strain JA-3-3Ab) GN=rsmA PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 5.470e-21 Identity = 67/158 (42.41%), Postives = 92/158 (58.23%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGI----KSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL-PYFDICVANIPYQISSPLTFKLLFH--QPA--FRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQ 522 K GQH LK+P + E+IV+ A + + +LEIGPGTG LT++LL G V+AVE+D + LQ+RF P R +++GD L+ L P + VANIPY ++ P+ K+L QP F ++M QKE A RL A PG K Y LSV + Sbjct: 6 KRFGQHWLKDPAVHEAIVRAAQLPPPQRDPAWVLEIGPGTGQLTQRLLAQGVHVVAVEIDRDLCRLLQKRFADQP---RFHLVEGDFLRLPLPPQPRLLVANIPYNLTGPILEKVLGSPAQPVRQFERIVLMVQKELAERLQAGPGSKAYGALSVRVR 160
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_PROM1 (Ribosomal RNA small subunit methyltransferase A OS=Prochlorococcus marinus (strain NATL1A) GN=rsmA PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 7.144e-21 Identity = 61/164 (37.20%), Postives = 96/164 (58.54%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLE-VGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP-----YFDICVANIPYQISSPLTFKLLFH-----QPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHAR 534 K GQH LK+ +++ IV+ A + D +LE+GPG G LT+KL+E K + A+ELD +V+ L++RF + N+ + +GD+L L + VANIPY I+ PL +L+ + +F +++ QKE A RL+A+PG+ + LSV QL A+ Sbjct: 16 KRFGQHWLKDQGVLDQIVKAAELNPEDCVLEVGPGKGALTEKLIESQAKFIQAIELDRDLVIGLKKRFN---HQNKFSLREGDILSAPLDAENGVTINKVVANIPYNITGPLLKRLIGELRKAPENSFETLVLLMQKEVAQRLLARPGNSNFSALSVRVQLLAK 176 The following BLAST results are available for this feature:
BLAST of DN617688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DN617688 ID=DN617688; Name=DN617688; organism=Citrus sinensis; type=EST; length=548bpback to top |