DN617688
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_STRCO (Ribosomal RNA small subunit methyltransferase A OS=Streptomyces coelicolor GN=rsmA PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 1.704e-14 Identity = 52/159 (32.70%), Postives = 80/159 (50.31%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRM--VLELQRRFQSTPYSNRLKVIQGD---VLKTDLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537 K +GQ+ + + V IV+ A ++ DV++E+GPG G+LT LLE V AVE+D + L + ++R ++ D V + P VAN+PY ++ P+ +L P ++M Q E A RL A PG K+Y SV +A V Sbjct: 28 KQRGQNFVIDANTVRRIVRTAEVRPDDVVVEVGPGLGSLTLALLEAADRVTAVEIDDVLAGALPATVAARMPARADRFALVHSDAMHVRELPGPAPTALVANLPYNVAVPVLLHMLDTFPGIERTLVMVQAEVADRLAAGPGSKVYGVPSVKANWYAEV 186
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_EHRCJ (Ribosomal RNA small subunit methyltransferase A OS=Ehrlichia canis (strain Jake) GN=rsmA PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 1.704e-14 Identity = 57/160 (35.62%), Postives = 86/160 (53.75%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL-----PYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537 K Q + + + + IV AG S I+EIGPG G +T +L K +I++E DSR+ + + ++ ++ + + I D L DL P I +AN+PY I++PL K + + F +MFQKE A R+VAQP +K Y LSV QL + V Sbjct: 11 KELSQCFISSSHITDKIVNYAGNISDYSIIEIGPGLGTMTYSILNKNPKRLISIEKDSRL-MPIHKKIVDE-FNGKYEFILSDALNIDLRTIIEPPVKI-IANLPYHIATPLLMKWINYIDFFTSFTLMFQKEVADRIVAQPNNKNYSILSVLIQLLSNV 167
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_COXBR (Ribosomal RNA small subunit methyltransferase A OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=rsmA PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 1.704e-14 Identity = 54/150 (36.00%), Postives = 72/150 (48.00%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQS----TPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSV 513 K GQH L + +++ IV + TD ++EIGPG G LT LL + VE+D +V LQ+++ T Y N +KTD P V N+PY IS+PL F L M QKE R+ A+ G Y RLSV Sbjct: 8 KRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSSVKTDKPL--RVVGNLPYNISTPLLFHLFSQIHCIEDMHFMLQKEVVRRITAEVGSHDYGRLSV 155
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_PSYA2 (Ribosomal RNA small subunit methyltransferase A OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=rsmA PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 2.226e-14 Identity = 53/166 (31.93%), Postives = 80/166 (48.19%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDI---------CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546 K GQ+ L + ++ IV+ ++ D ++EIGPG G LT+ LL + VELD + L+ R + + N +I+ + + D Y ++ V N+PY IS+P+ F LL + M QKE R+ A G K Y RLSV Q H +L Sbjct: 24 KRFGQNFLHDRSVIREIVESIRLERDDNLIEIGPGMGALTEPLLAEVDAMTVVELDRDLADSLRIRIGANSHPN-FTIIKDNAMHVD--YRELYSEERGKLRVVGNLPYNISTPILFHLLSYADVIEDMHFMLQKEVVERITADVGSKTYGRLSVIMQYHCHTDYL 186
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_PELTS (Ribosomal RNA small subunit methyltransferase A OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=rsmA PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 2.226e-14 Identity = 52/168 (30.95%), Postives = 82/168 (48.81%), Query Frame = 1 Query: 64 ISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFD---------------ICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQ 522 IS KS GQ+ L + +++ I++ A + D+++EIGPG G LT + V+AVE+D ++ L + + +++I+GD L D +AN+PY ++ PL +LL + F ++M Q E A RL A PG Y LSV Q Sbjct: 19 ISPRKSLGQNFLIDLNIIDKIIKAADLTPADLVVEIGPGLGALTARAAARAGKVLAVEVDRGLLPALAEVLEG---AGNVEIIRGDALDVDFDRLAGEKTDGAFGRGGKKYKLLANLPYYLTGPLLLRLLLERFNFALMVVMVQLEVAFRLTASPGTADYGALSVAVQ 183
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_NITWN (Ribosomal RNA small subunit methyltransferase A OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rsmA PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 2.226e-14 Identity = 61/170 (35.88%), Postives = 85/170 (50.00%), Query Frame = 1 Query: 64 ISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD-LPYFDI----CVANIPYQISSPLTFKLLFHQ---PAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546 +S KS GQ+ L + L I + AG ++EIGPG G LT+ LL VG K VIA+E D R + L+ S Y RL +I D D P VAN+PY I++ L + L + P + ++MFQ+E A R+VA+ + Y RL V + A L Sbjct: 19 LSARKSLGQNFLLDLNLTSRIARAAGPLQDATVVEIGPGPGGLTRALLAVGAKHVIAIERDERALGALEE--ISDRYPGRLTIINADATDFDPRPLLGTTRAKIVANLPYNIATALLIRWLSIEPWPPWYDVMVLMFQREVAERIVARENEDAYGRLGVLSNWRAETKIL 186
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_DEIRA (Ribosomal RNA small subunit methyltransferase A OS=Deinococcus radiodurans GN=rsmA PE=3 SV=2) HSP 1 Score: 78.5666 bits (192), Expect = 2.226e-14 Identity = 57/160 (35.62%), Postives = 80/160 (50.00%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD---LPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546 KS GQ+ L + ++ +I + G + +LEIGPG G LT+++ G V A+E D R L+ T + VI GD L D LP +AN+PY I+ L + + P A ++ QKE A RLVAQPG Y LS L+ V H+ Sbjct: 41 KSLGQNFLIDGNILRAIAEAGGAAPGENVLEIGPGLGVLTREVASRGARVTALEKDER----LRPVLAETLAGLDVNVIWGDALDFDYAALPAGTRVIANLPYYITGLLLTRFM-QAPGVVSATVLVQKEVAQRLVAQPGQDNYGFLSAVAALYGSVKHV 195
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_CHLPN (Ribosomal RNA small subunit methyltransferase A OS=Chlamydia pneumoniae GN=rsmA PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 2.226e-14 Identity = 57/165 (34.55%), Postives = 82/165 (49.70%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFD--------ICVANIPYQISSPLTFKLLFHQPAF-RCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSH 543 KS Q+ L + +V+ IV + + D +LEIGPG G LT++L+ G VIA+E D L+ RL++I D K L VAN+PY I++PL KL P F + +M Q E A R+VAQPG + Y L++ Q A + + Sbjct: 22 KSLSQNFLVDQNIVKKIVATSEVIPQDWVLEIGPGFGALTEELIAAGAQVIAIEKDPMFAPSLEE------LPIRLEII--DACKYPLDQLQEYKTLGKGRVVANLPYHITTPLLTKLFLEAPDFWKTVTVMVQDEVARRIVAQPGGRDYGSLTIFLQFFADIHY 178
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_BRAJA (Ribosomal RNA small subunit methyltransferase A OS=Bradyrhizobium japonicum GN=rsmA PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 2.226e-14 Identity = 56/159 (35.22%), Postives = 84/159 (52.83%), Query Frame = 1 Query: 64 ISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD-LPYFD----ICVANIPYQISSPLTFKLLFHQ---PAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSV 513 +S KS GQ+ L + L I + A I+EIGPG G LT+ LL +G + V+A+E D R + LQ S Y RL+++ GD + D P + VAN+PY I++ L L + P + ++MFQ+E R+VA+ ++ Y RL V Sbjct: 19 LSARKSLGQNFLLDLNLTARIARAAAPLDNSTIVEIGPGPGGLTRALLALGARRVVAIEHDERAIPALQD--ISARYPGRLEIVHGDAMTFDPRPLLNGESAKIVANLPYNIATQLLINWLTTEPWPPWYDMMVLMFQREVGERIVAREDEEAYGRLGV 175
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_BARBK (Ribosomal RNA small subunit methyltransferase A OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=rsmA PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 2.226e-14 Identity = 56/160 (35.00%), Postives = 79/160 (49.38%), Query Frame = 1 Query: 73 HKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSR---MVLELQRRFQSTPYSNRLKVIQGDVLKTDL-------PYFDICVANIPYQISSPLTFKLLF---HQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSV 513 +KS GQ+ L + L I ++AG ++EIGPG G LT+ LL G +V +E D R +LE+++ Y +L +I D LK DL P +AN+PY I + L L P + +MFQ+E A R+ A P Y RLSV Sbjct: 21 NKSLGQNFLFDLNLTSKIARQAGNIEGKPVIEIGPGPGGLTRALLAKGAIVTVIERDKRCLPALLEIEKH-----YPKKLNLIFDDALKQDLSKLSETYPEKPRIIANLPYNIGTQLLLNWLLTTSWPPFYESMTLMFQREVAKRITATPQSPHYSRLSV 175 The following BLAST results are available for this feature:
BLAST of DN617688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DN617688 ID=DN617688; Name=DN617688; organism=Citrus sinensis; type=EST; length=548bpback to top |