DN617688

Overview
NameDN617688
Unique NameDN617688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length548
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_STRCO (Ribosomal RNA small subunit methyltransferase A OS=Streptomyces coelicolor GN=rsmA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.704e-14
Identity = 52/159 (32.70%), Postives = 80/159 (50.31%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRM--VLELQRRFQSTPYSNRLKVIQGD---VLKTDLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537
            K +GQ+ + +   V  IV+ A ++  DV++E+GPG G+LT  LLE    V AVE+D  +   L      +    ++R  ++  D   V +   P     VAN+PY ++ P+   +L   P     ++M Q E A RL A PG K+Y   SV    +A V
Sbjct:   28 KQRGQNFVIDANTVRRIVRTAEVRPDDVVVEVGPGLGSLTLALLEAADRVTAVEIDDVLAGALPATVAARMPARADRFALVHSDAMHVRELPGPAPTALVANLPYNVAVPVLLHMLDTFPGIERTLVMVQAEVADRLAAGPGSKVYGVPSVKANWYAEV 186          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_EHRCJ (Ribosomal RNA small subunit methyltransferase A OS=Ehrlichia canis (strain Jake) GN=rsmA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.704e-14
Identity = 57/160 (35.62%), Postives = 86/160 (53.75%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL-----PYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537
            K   Q  + +  + + IV  AG  S   I+EIGPG G +T  +L    K +I++E DSR+ + + ++     ++ + + I  D L  DL     P   I +AN+PY I++PL  K + +   F    +MFQKE A R+VAQP +K Y  LSV  QL + V
Sbjct:   11 KELSQCFISSSHITDKIVNYAGNISDYSIIEIGPGLGTMTYSILNKNPKRLISIEKDSRL-MPIHKKIVDE-FNGKYEFILSDALNIDLRTIIEPPVKI-IANLPYHIATPLLMKWINYIDFFTSFTLMFQKEVADRIVAQPNNKNYSILSVLIQLLSNV 167          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_COXBR (Ribosomal RNA small subunit methyltransferase A OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=rsmA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.704e-14
Identity = 54/150 (36.00%), Postives = 72/150 (48.00%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQS----TPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSV 513
            K  GQH L +  +++ IV     + TD ++EIGPG G LT  LL     +  VE+D  +V  LQ+++      T Y N         +KTD P     V N+PY IS+PL F L            M QKE   R+ A+ G   Y RLSV
Sbjct:    8 KRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSSVKTDKPL--RVVGNLPYNISTPLLFHLFSQIHCIEDMHFMLQKEVVRRITAEVGSHDYGRLSV 155          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_PSYA2 (Ribosomal RNA small subunit methyltransferase A OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=rsmA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.226e-14
Identity = 53/166 (31.93%), Postives = 80/166 (48.19%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDI---------CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546
            K  GQ+ L +  ++  IV+   ++  D ++EIGPG G LT+ LL     +  VELD  +   L+ R  +  + N   +I+ + +  D  Y ++          V N+PY IS+P+ F LL +         M QKE   R+ A  G K Y RLSV  Q H    +L
Sbjct:   24 KRFGQNFLHDRSVIREIVESIRLERDDNLIEIGPGMGALTEPLLAEVDAMTVVELDRDLADSLRIRIGANSHPN-FTIIKDNAMHVD--YRELYSEERGKLRVVGNLPYNISTPILFHLLSYADVIEDMHFMLQKEVVERITADVGSKTYGRLSVIMQYHCHTDYL 186          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_PELTS (Ribosomal RNA small subunit methyltransferase A OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=rsmA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.226e-14
Identity = 52/168 (30.95%), Postives = 82/168 (48.81%), Query Frame = 1
Query:   64 ISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFD---------------ICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQ 522
            IS  KS GQ+ L +  +++ I++ A +   D+++EIGPG G LT +       V+AVE+D  ++  L    +    +  +++I+GD L  D                      +AN+PY ++ PL  +LL  +  F   ++M Q E A RL A PG   Y  LSV  Q
Sbjct:   19 ISPRKSLGQNFLIDLNIIDKIIKAADLTPADLVVEIGPGLGALTARAAARAGKVLAVEVDRGLLPALAEVLEG---AGNVEIIRGDALDVDFDRLAGEKTDGAFGRGGKKYKLLANLPYYLTGPLLLRLLLERFNFALMVVMVQLEVAFRLTASPGTADYGALSVAVQ 183          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_NITWN (Ribosomal RNA small subunit methyltransferase A OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rsmA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.226e-14
Identity = 61/170 (35.88%), Postives = 85/170 (50.00%), Query Frame = 1
Query:   64 ISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD-LPYFDI----CVANIPYQISSPLTFKLLFHQ---PAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546
            +S  KS GQ+ L +  L   I + AG      ++EIGPG G LT+ LL VG K VIA+E D R +  L+    S  Y  RL +I  D    D  P         VAN+PY I++ L  + L  +   P +   ++MFQ+E A R+VA+  +  Y RL V +   A    L
Sbjct:   19 LSARKSLGQNFLLDLNLTSRIARAAGPLQDATVVEIGPGPGGLTRALLAVGAKHVIAIERDERALGALEE--ISDRYPGRLTIINADATDFDPRPLLGTTRAKIVANLPYNIATALLIRWLSIEPWPPWYDVMVLMFQREVAERIVARENEDAYGRLGVLSNWRAETKIL 186          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_DEIRA (Ribosomal RNA small subunit methyltransferase A OS=Deinococcus radiodurans GN=rsmA PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.226e-14
Identity = 57/160 (35.62%), Postives = 80/160 (50.00%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD---LPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546
            KS GQ+ L +  ++ +I +  G    + +LEIGPG G LT+++   G  V A+E D R    L+     T     + VI GD L  D   LP     +AN+PY I+  L  + +   P    A ++ QKE A RLVAQPG   Y  LS    L+  V H+
Sbjct:   41 KSLGQNFLIDGNILRAIAEAGGAAPGENVLEIGPGLGVLTREVASRGARVTALEKDER----LRPVLAETLAGLDVNVIWGDALDFDYAALPAGTRVIANLPYYITGLLLTRFM-QAPGVVSATVLVQKEVAQRLVAQPGQDNYGFLSAVAALYGSVKHV 195          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_CHLPN (Ribosomal RNA small subunit methyltransferase A OS=Chlamydia pneumoniae GN=rsmA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.226e-14
Identity = 57/165 (34.55%), Postives = 82/165 (49.70%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFD--------ICVANIPYQISSPLTFKLLFHQPAF-RCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSH 543
            KS  Q+ L +  +V+ IV  + +   D +LEIGPG G LT++L+  G  VIA+E D      L+          RL++I  D  K  L              VAN+PY I++PL  KL    P F +   +M Q E A R+VAQPG + Y  L++  Q  A + +
Sbjct:   22 KSLSQNFLVDQNIVKKIVATSEVIPQDWVLEIGPGFGALTEELIAAGAQVIAIEKDPMFAPSLEE------LPIRLEII--DACKYPLDQLQEYKTLGKGRVVANLPYHITTPLLTKLFLEAPDFWKTVTVMVQDEVARRIVAQPGGRDYGSLTIFLQFFADIHY 178          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_BRAJA (Ribosomal RNA small subunit methyltransferase A OS=Bradyrhizobium japonicum GN=rsmA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.226e-14
Identity = 56/159 (35.22%), Postives = 84/159 (52.83%), Query Frame = 1
Query:   64 ISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD-LPYFD----ICVANIPYQISSPLTFKLLFHQ---PAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSV 513
            +S  KS GQ+ L +  L   I + A       I+EIGPG G LT+ LL +G + V+A+E D R +  LQ    S  Y  RL+++ GD +  D  P  +      VAN+PY I++ L    L  +   P +   ++MFQ+E   R+VA+  ++ Y RL V
Sbjct:   19 LSARKSLGQNFLLDLNLTARIARAAAPLDNSTIVEIGPGPGGLTRALLALGARRVVAIEHDERAIPALQD--ISARYPGRLEIVHGDAMTFDPRPLLNGESAKIVANLPYNIATQLLINWLTTEPWPPWYDMMVLMFQREVGERIVAREDEEAYGRLGV 175          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_BARBK (Ribosomal RNA small subunit methyltransferase A OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=rsmA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.226e-14
Identity = 56/160 (35.00%), Postives = 79/160 (49.38%), Query Frame = 1
Query:   73 HKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSR---MVLELQRRFQSTPYSNRLKVIQGDVLKTDL-------PYFDICVANIPYQISSPLTFKLLF---HQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSV 513
            +KS GQ+ L +  L   I ++AG      ++EIGPG G LT+ LL  G +V  +E D R    +LE+++      Y  +L +I  D LK DL       P     +AN+PY I + L    L      P +    +MFQ+E A R+ A P    Y RLSV
Sbjct:   21 NKSLGQNFLFDLNLTSKIARQAGNIEGKPVIEIGPGPGGLTRALLAKGAIVTVIERDKRCLPALLEIEKH-----YPKKLNLIFDDALKQDLSKLSETYPEKPRIIANLPYNIGTQLLLNWLLTTSWPPFYESMTLMFQREVAKRITATPQSPHYSRLSV 175          
The following BLAST results are available for this feature:
BLAST of DN617688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RSMA_STRCO1.704e-1432.70Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_EHRCJ1.704e-1435.63Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_COXBR1.704e-1436.00Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_PSYA22.226e-1431.93Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_PELTS2.226e-1430.95Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_NITWN2.226e-1435.88Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_DEIRA2.226e-1435.63Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_CHLPN2.226e-1434.55Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_BRAJA2.226e-1435.22Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_BARBK2.226e-1435.00Ribosomal RNA small subunit methyltransferase A OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I22_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617688 ID=DN617688; Name=DN617688; organism=Citrus sinensis; type=EST; length=548bp
AGGAAGGAGAAAGGAAAGCAGAAAAGTGGACCGTATCAAGGACAAGGACT
AGGAGCAGGAGGTATATCCTTCCACAAATCAAAGGGGCAGCACATTCTGA
AGAACCCTTTGCTTGTGGAGAGCATCGTCCAAAAAGCCGGCATCAAGAGC
ACCGATGTCATTCTTGAGATTGGTCCCGGCACTGGTAATCTCACCAAAAA
GCTTCTGGAAGTTGGCAAGATGGTCATCGCTGTCGAGCTTGACTCTCGTA
TGGTTCTCGAGCTCCAGCGCCGTTTTCAATCCACCCCTTACTCCAACCGT
TTAAAGGTCATTCAGGGTGATGTCCTCAAGACTGATCTTCCCTATTTTGA
TATATGTGTGGCAAACATCCCGTACCAAATCTCCTCCCCACTCACATTCA
AGTTGTTGTTTCACCAACCTGCCTTCAGATGCGCGATTATTATGTTCCAG
AAAGAATTTGCTATGAGACTTGTTGCTCAACCCGGTGACAAGCTCTACTG
TCGTCTTTCTGTGAATACACAACTTCATGCTCGGGTCTCCCACCTCCT
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