DN617688
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_ACIAD (Ribosomal RNA small subunit methyltransferase A OS=Acinetobacter sp. (strain ADP1) GN=rsmA PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 2.226e-14 Identity = 55/167 (32.93%), Postives = 79/167 (47.31%), Query Frame = 1 Query: 73 HKSK---GQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDI------CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546 HK++ GQ+ L + ++ IV+ + D ++EIGPG LT L+ + VELD + L R P+ RL +++ D LK D V N+PY IS+PL F LL + M QKE R+ A+P K Y RLSV Q + + L Sbjct: 18 HKARKRFGQNFLHDQRVIAKIVRSVNPRPGDNVVEIGPGLAALTSPLIGECDALTVVELDRDLAAGLPDR---VPHPERLTIVEADALKYDFSQLATQESPLRVVGNLPYNISTPLLFHLLEFGDKVKDMHFMLQKEVVDRITAEPNTKEYGRLSVMIQYFCQPTFL 181
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_RHIE6 (Ribosomal RNA small subunit methyltransferase A OS=Rhizobium etli (strain CIAT 652) GN=rsmA PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 2.907e-14 Identity = 55/155 (35.48%), Postives = 80/155 (51.61%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFD-----ICVANIPYQISSPLTFKLLFHQ---PAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSV 513 K+ GQ+ L + L + + + AG + E+GPG G LT+ +L +G K VIAVE D+R + L + Y RL+VI+GD LK D +AN+PY + + L L + P ++ +MFQKE R+VA D Y RL V Sbjct: 23 KALGQNFLLDLNLTQKVARTAGGLEGMTVFEVGPGPGGLTRAILALGAKKVIAVERDARCLPALAE--IADHYPGRLEVIEGDALKADFESLAPEGAVKIIANLPYNVGTQLLVNWLLPKAWPPFWQSLTLMFQKEVGERIVATEDDDHYGRLGV 175
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_LISIN (Ribosomal RNA small subunit methyltransferase A OS=Listeria innocua GN=rsmA PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 2.907e-14 Identity = 54/164 (32.93%), Postives = 82/164 (50.00%), Query Frame = 1 Query: 70 FHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL----------PYFDI-CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLH 528 F KS GQ+ L + ++ I A I ++EIGPG G LT++L + V+A E+D R++ L + Y N ++V+ DVLK D+ P + VAN+PY +++P+ KLL M QKE A R+ A P K Y L++ Q + Sbjct: 22 FKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKTANEVVAFEIDQRLLPILDDTLSN--YDN-VRVVHNDVLKADVAEVITEQFAKPELPLKIVANLPYYVTTPIILKLLHDNIPADSMTFMLQKEVADRISAVPSTKSYGSLTIAIQFY 182
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_ERWT9 (Ribosomal RNA small subunit methyltransferase A OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=rsmA PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 2.907e-14 Identity = 55/162 (33.95%), Postives = 80/162 (49.38%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSN-RLKVIQGDVLKTDLPYFDI-------CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537 K GQ+ L + +++SIV + + ++EIGPG G LT+ + E + VELD +L R Q+ P+ +L + Q D + D N+PY IS+PL F L + A + M QKE RLVA PG K Y RL+V Q + +V Sbjct: 13 KRFGQNFLNDQYIIDSIVNAIHPQRGEAVVEIGPGLGALTEPVGERLDNMTVVELDR----DLAARLQTHPFLGPKLTIFQQDAMTFDFAALAQEKGQPLRVFGNLPYNISTPLMFHLFSYVGAIKDMHFMLQKEVVNRLVAGPGSKAYGRLTVMAQYYCQV 170
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_BAUCH (Ribosomal RNA small subunit methyltransferase A OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=rsmA PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 2.907e-14 Identity = 53/163 (32.52%), Postives = 80/163 (49.08%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDIC---------VANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537 K GQH L + ++ESIV + ++EIGPG G LTK + + K + +ELD +V L ++L ++ DV+K + + D+ N+PY IS L F L H R M QKE RL+A+P +K Y +LSV Q + ++ Sbjct: 13 KCLGQHFLHDQNIIESIVAVIHPLPSQALVEIGPGLGALTKYVAKYVKTITVIELDHNLVAYLANH---PILQHKLNILSQDVMKVN--FSDLAKKLSQPLRIFGNLPYNISIALMFNLFRHIHMIRDMHFMLQKEVVSRLLAKPNNKNYGKLSVIAQHYCQI 170
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_ACIAC (Ribosomal RNA small subunit methyltransferase A OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=rsmA PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 2.907e-14 Identity = 59/158 (37.34%), Postives = 79/158 (50.00%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL---------PYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQ 522 K GQH L + ++++IV+ ++EIGPG LT+ L+E + VELD +L +R +S +L VI+ DVLK D P I V N+PY IS+P+ F LL H M QKE R+VAQP Y RLSV Q Sbjct: 7 KRFGQHFLADQAIIDAIVRAIAPAPGQPMVEIGPGLAALTQPLVERLGRLTVVELDR----DLAQRLRS---HGQLDVIESDVLKVDFSAVAANLGAPRIRI-VGNLPYNISTPILFHLLEHVGVVEDQHFMLQKEVIDRMVAQPATSDYGRLSVMLQ 156
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_SODGM (Ribosomal RNA small subunit methyltransferase A OS=Sodalis glossinidius (strain morsitans) GN=rsmA PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 3.797e-14 Identity = 53/162 (32.72%), Postives = 78/162 (48.15%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPY-SNRLKVIQGDVLKTDLPYFDI-------CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537 K GQ+ L + ++++IV + I+EIGPG G LT+ + E + +ELD +L R S P+ ++L ++Q D + D N+PY IS+PL F L + A R M QKE RLV P K Y RLSV Q + ++ Sbjct: 13 KRFGQNFLHDSSIIDAIVAAIHPQPGQAIVEIGPGLGALTEPVAERVDEMTVIELDR----DLAARLASHPFLQSKLNIVQKDAMTVDFAALSAERGQPLRVFGNLPYNISTPLMFHLFSYTHAIRDMHFMLQKEVVNRLVDGPNGKAYGRLSVMAQYYCQI 170
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_SHEFN (Ribosomal RNA small subunit methyltransferase A OS=Shewanella frigidimarina (strain NCIMB 400) GN=rsmA PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 3.797e-14 Identity = 54/160 (33.75%), Postives = 77/160 (48.12%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDI------CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537 K GQ+ L + ++ SIV + V++EIGPG G LT+ + ++ + VELD +V LQ ++L + QGD L+ D N+PY IS+PL F L M QKE +RL A PG K Y RL+V Q + +V Sbjct: 13 KRFGQNFLTDQGVISSIVGAIAPDNDHVMVEIGPGLGALTEPVADMIDNLTVVELDRDLVKRLQYH---PVLKDKLTIHQGDALQFDFGQLQQPGKKMKVFGNLPYNISTPLMFHLFEFAEQIETMHFMLQKEVVLRLSASPGTKAYGRLTVMAQYYCQV 169
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_RICFE (Ribosomal RNA small subunit methyltransferase A OS=Rickettsia felis GN=rsmA PE=3 SV=2) HSP 1 Score: 77.7962 bits (190), Expect = 3.797e-14 Identity = 54/159 (33.96%), Postives = 79/159 (49.69%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAV-ELDSRMVLELQRRFQSTPYSNRLKVIQGDVLK---TDLPYFDICV-ANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537 K GQ+ + + L + IV+ + + +LEIGPGTG LT+ +L+ + V E D R + L + Y L +I+ D LK TDL Y + + +N+PY I + L + L +M QKE R+ A P K Y RLSV QL +V Sbjct: 18 KKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSILQKNPASLTVIETDERCIPLLN---EIKEYYPNLNIIKQDALKINLTDLGYDKVTIISNLPYHIGTELVIRWLKEARLITNMTLMLQKEVVERICAMPSTKAYGRLSVICQLITKV 173
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_OLICO (Ribosomal RNA small subunit methyltransferase A OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=rsmA PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 3.797e-14 Identity = 60/155 (38.71%), Postives = 80/155 (51.61%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD-LPYFD----ICVANIPYQISSPLTFKLLFHQ---PAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSV 513 KS GQ+ L + L I + AG ++EIGPG G LT+ LL G K VIAVE D R + L+ + Y RL++I GD D P VAN+PY I++ L L + P F ++MFQ+E A R+VA D+ Y RL V Sbjct: 23 KSLGQNFLFDLNLTARIARAAGPLDDVTVIEIGPGPGGLTRALLATGAKRVIAVERDERAIPALEE--IARRYPGRLEIIHGDATTFDPTPLLQGERARIVANLPYNIATLLLTGWLSVEPWPPWFDMMVLMFQREVAERIVATENDEAYGRLGV 175 The following BLAST results are available for this feature:
BLAST of DN617688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DN617688 ID=DN617688; Name=DN617688; organism=Citrus sinensis; type=EST; length=548bpback to top |