DN617688

Overview
NameDN617688
Unique NameDN617688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length548
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_ACIAD (Ribosomal RNA small subunit methyltransferase A OS=Acinetobacter sp. (strain ADP1) GN=rsmA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.226e-14
Identity = 55/167 (32.93%), Postives = 79/167 (47.31%), Query Frame = 1
Query:   73 HKSK---GQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDI------CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546
            HK++   GQ+ L +  ++  IV+    +  D ++EIGPG   LT  L+     +  VELD  +   L  R    P+  RL +++ D LK D             V N+PY IS+PL F LL      +    M QKE   R+ A+P  K Y RLSV  Q   + + L
Sbjct:   18 HKARKRFGQNFLHDQRVIAKIVRSVNPRPGDNVVEIGPGLAALTSPLIGECDALTVVELDRDLAAGLPDR---VPHPERLTIVEADALKYDFSQLATQESPLRVVGNLPYNISTPLLFHLLEFGDKVKDMHFMLQKEVVDRITAEPNTKEYGRLSVMIQYFCQPTFL 181          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_RHIE6 (Ribosomal RNA small subunit methyltransferase A OS=Rhizobium etli (strain CIAT 652) GN=rsmA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.907e-14
Identity = 55/155 (35.48%), Postives = 80/155 (51.61%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFD-----ICVANIPYQISSPLTFKLLFHQ---PAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSV 513
            K+ GQ+ L +  L + + + AG      + E+GPG G LT+ +L +G K VIAVE D+R +  L     +  Y  RL+VI+GD LK D            +AN+PY + + L    L  +   P ++   +MFQKE   R+VA   D  Y RL V
Sbjct:   23 KALGQNFLLDLNLTQKVARTAGGLEGMTVFEVGPGPGGLTRAILALGAKKVIAVERDARCLPALAE--IADHYPGRLEVIEGDALKADFESLAPEGAVKIIANLPYNVGTQLLVNWLLPKAWPPFWQSLTLMFQKEVGERIVATEDDDHYGRLGV 175          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_LISIN (Ribosomal RNA small subunit methyltransferase A OS=Listeria innocua GN=rsmA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.907e-14
Identity = 54/164 (32.93%), Postives = 82/164 (50.00%), Query Frame = 1
Query:   70 FHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL----------PYFDI-CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLH 528
            F KS GQ+ L +  ++  I   A I     ++EIGPG G LT++L +    V+A E+D R++  L     +  Y N ++V+  DVLK D+          P   +  VAN+PY +++P+  KLL           M QKE A R+ A P  K Y  L++  Q +
Sbjct:   22 FKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKTANEVVAFEIDQRLLPILDDTLSN--YDN-VRVVHNDVLKADVAEVITEQFAKPELPLKIVANLPYYVTTPIILKLLHDNIPADSMTFMLQKEVADRISAVPSTKSYGSLTIAIQFY 182          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_ERWT9 (Ribosomal RNA small subunit methyltransferase A OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=rsmA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.907e-14
Identity = 55/162 (33.95%), Postives = 80/162 (49.38%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSN-RLKVIQGDVLKTDLPYFDI-------CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537
            K  GQ+ L +  +++SIV     +  + ++EIGPG G LT+ + E    +  VELD     +L  R Q+ P+   +L + Q D +  D                N+PY IS+PL F L  +  A +    M QKE   RLVA PG K Y RL+V  Q + +V
Sbjct:   13 KRFGQNFLNDQYIIDSIVNAIHPQRGEAVVEIGPGLGALTEPVGERLDNMTVVELDR----DLAARLQTHPFLGPKLTIFQQDAMTFDFAALAQEKGQPLRVFGNLPYNISTPLMFHLFSYVGAIKDMHFMLQKEVVNRLVAGPGSKAYGRLTVMAQYYCQV 170          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_BAUCH (Ribosomal RNA small subunit methyltransferase A OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=rsmA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.907e-14
Identity = 53/163 (32.52%), Postives = 80/163 (49.08%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDIC---------VANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537
            K  GQH L +  ++ESIV       +  ++EIGPG G LTK + +  K +  +ELD  +V  L          ++L ++  DV+K +  + D+            N+PY IS  L F L  H    R    M QKE   RL+A+P +K Y +LSV  Q + ++
Sbjct:   13 KCLGQHFLHDQNIIESIVAVIHPLPSQALVEIGPGLGALTKYVAKYVKTITVIELDHNLVAYLANH---PILQHKLNILSQDVMKVN--FSDLAKKLSQPLRIFGNLPYNISIALMFNLFRHIHMIRDMHFMLQKEVVSRLLAKPNNKNYGKLSVIAQHYCQI 170          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_ACIAC (Ribosomal RNA small subunit methyltransferase A OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=rsmA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.907e-14
Identity = 59/158 (37.34%), Postives = 79/158 (50.00%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL---------PYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQ 522
            K  GQH L +  ++++IV+         ++EIGPG   LT+ L+E    +  VELD     +L +R +S     +L VI+ DVLK D          P   I V N+PY IS+P+ F LL H         M QKE   R+VAQP    Y RLSV  Q
Sbjct:    7 KRFGQHFLADQAIIDAIVRAIAPAPGQPMVEIGPGLAALTQPLVERLGRLTVVELDR----DLAQRLRS---HGQLDVIESDVLKVDFSAVAANLGAPRIRI-VGNLPYNISTPILFHLLEHVGVVEDQHFMLQKEVIDRMVAQPATSDYGRLSVMLQ 156          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_SODGM (Ribosomal RNA small subunit methyltransferase A OS=Sodalis glossinidius (strain morsitans) GN=rsmA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.797e-14
Identity = 53/162 (32.72%), Postives = 78/162 (48.15%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPY-SNRLKVIQGDVLKTDLPYFDI-------CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537
            K  GQ+ L +  ++++IV     +    I+EIGPG G LT+ + E    +  +ELD     +L  R  S P+  ++L ++Q D +  D                N+PY IS+PL F L  +  A R    M QKE   RLV  P  K Y RLSV  Q + ++
Sbjct:   13 KRFGQNFLHDSSIIDAIVAAIHPQPGQAIVEIGPGLGALTEPVAERVDEMTVIELDR----DLAARLASHPFLQSKLNIVQKDAMTVDFAALSAERGQPLRVFGNLPYNISTPLMFHLFSYTHAIRDMHFMLQKEVVNRLVDGPNGKAYGRLSVMAQYYCQI 170          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_SHEFN (Ribosomal RNA small subunit methyltransferase A OS=Shewanella frigidimarina (strain NCIMB 400) GN=rsmA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.797e-14
Identity = 54/160 (33.75%), Postives = 77/160 (48.12%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDI------CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537
            K  GQ+ L +  ++ SIV      +  V++EIGPG G LT+ + ++   +  VELD  +V  LQ         ++L + QGD L+ D               N+PY IS+PL F L            M QKE  +RL A PG K Y RL+V  Q + +V
Sbjct:   13 KRFGQNFLTDQGVISSIVGAIAPDNDHVMVEIGPGLGALTEPVADMIDNLTVVELDRDLVKRLQYH---PVLKDKLTIHQGDALQFDFGQLQQPGKKMKVFGNLPYNISTPLMFHLFEFAEQIETMHFMLQKEVVLRLSASPGTKAYGRLTVMAQYYCQV 169          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_RICFE (Ribosomal RNA small subunit methyltransferase A OS=Rickettsia felis GN=rsmA PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 3.797e-14
Identity = 54/159 (33.96%), Postives = 79/159 (49.69%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAV-ELDSRMVLELQRRFQSTPYSNRLKVIQGDVLK---TDLPYFDICV-ANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537
            K  GQ+ + +  L + IV+ + +     +LEIGPGTG LT+ +L+     + V E D R +  L    +   Y   L +I+ D LK   TDL Y  + + +N+PY I + L  + L          +M QKE   R+ A P  K Y RLSV  QL  +V
Sbjct:   18 KKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSILQKNPASLTVIETDERCIPLLN---EIKEYYPNLNIIKQDALKINLTDLGYDKVTIISNLPYHIGTELVIRWLKEARLITNMTLMLQKEVVERICAMPSTKAYGRLSVICQLITKV 173          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_OLICO (Ribosomal RNA small subunit methyltransferase A OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=rsmA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.797e-14
Identity = 60/155 (38.71%), Postives = 80/155 (51.61%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD-LPYFD----ICVANIPYQISSPLTFKLLFHQ---PAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSV 513
            KS GQ+ L +  L   I + AG      ++EIGPG G LT+ LL  G K VIAVE D R +  L+    +  Y  RL++I GD    D  P         VAN+PY I++ L    L  +   P F   ++MFQ+E A R+VA   D+ Y RL V
Sbjct:   23 KSLGQNFLFDLNLTARIARAAGPLDDVTVIEIGPGPGGLTRALLATGAKRVIAVERDERAIPALEE--IARRYPGRLEIIHGDATTFDPTPLLQGERARIVANLPYNIATLLLTGWLSVEPWPPWFDMMVLMFQREVAERIVATENDEAYGRLGV 175          
The following BLAST results are available for this feature:
BLAST of DN617688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RSMA_ACIAD2.226e-1432.93Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_RHIE62.907e-1435.48Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_LISIN2.907e-1432.93Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_ERWT92.907e-1433.95Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_BAUCH2.907e-1432.52Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_ACIAC2.907e-1437.34Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_SODGM3.797e-1432.72Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_SHEFN3.797e-1433.75Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_RICFE3.797e-1433.96Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_OLICO3.797e-1438.71Ribosomal RNA small subunit methyltransferase A OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I22_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617688 ID=DN617688; Name=DN617688; organism=Citrus sinensis; type=EST; length=548bp
AGGAAGGAGAAAGGAAAGCAGAAAAGTGGACCGTATCAAGGACAAGGACT
AGGAGCAGGAGGTATATCCTTCCACAAATCAAAGGGGCAGCACATTCTGA
AGAACCCTTTGCTTGTGGAGAGCATCGTCCAAAAAGCCGGCATCAAGAGC
ACCGATGTCATTCTTGAGATTGGTCCCGGCACTGGTAATCTCACCAAAAA
GCTTCTGGAAGTTGGCAAGATGGTCATCGCTGTCGAGCTTGACTCTCGTA
TGGTTCTCGAGCTCCAGCGCCGTTTTCAATCCACCCCTTACTCCAACCGT
TTAAAGGTCATTCAGGGTGATGTCCTCAAGACTGATCTTCCCTATTTTGA
TATATGTGTGGCAAACATCCCGTACCAAATCTCCTCCCCACTCACATTCA
AGTTGTTGTTTCACCAACCTGCCTTCAGATGCGCGATTATTATGTTCCAG
AAAGAATTTGCTATGAGACTTGTTGCTCAACCCGGTGACAAGCTCTACTG
TCGTCTTTCTGTGAATACACAACTTCATGCTCGGGTCTCCCACCTCCT
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