DN617688
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_HERAR (Ribosomal RNA small subunit methyltransferase A OS=Herminiimonas arsenicoxydans GN=rsmA PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 3.797e-14 Identity = 53/156 (33.97%), Postives = 77/156 (49.36%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDI-------CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQ 522 K GQ+ L + ++ +I+ + D ++EIGPG +T+ LL+ + VELD +V L++ F +L + D L+ D + V N+PY ISSPL F L P + M QKE R+VA+PG K Y RLSV Q Sbjct: 7 KRFGQNFLTDDGVLHNIILAIDPQPQDTMVEIGPGLAAMTRLLLDGVNQMHVVELDRDLVERLKKTFDP----KKLIIHSADALQFDFSTIPVPAGSKLRVVGNLPYNISSPLLFHLAEMAPHVQDQHFMLQKEVVERMVAEPGSKTYGRLSVMLQ 158
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_HAEDU (Ribosomal RNA small subunit methyltransferase A OS=Haemophilus ducreyi GN=rsmA PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 3.797e-14 Identity = 54/166 (32.53%), Postives = 82/166 (49.40%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPY-SNRLKVIQGDVLKTDL-PYFDIC----------VANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537 K GQ+ L + ++ +IV ++ D +LEIGPG G LT+ + E + + +ELD +L R + P+ ++L VI+ D L+ + YFD N+PY IS+PL F L + M QKE RL A P K Y RL++ Q + +V Sbjct: 16 KRFGQNFLSDMNVIHNIVAAINPRNEDFLLEIGPGLGALTEPVAEQVEKLTVIELDR----DLAERLRHHPFLHHKLTVIEQDALRFNFRDYFDSLNLNHHQAIRIFGNLPYNISTPLMFHLFKFHDLIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYYCQV 177
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_FUSNN (Ribosomal RNA small subunit methyltransferase A OS=Fusobacterium nucleatum subsp. nucleatum GN=rsmA PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 3.797e-14 Identity = 53/144 (36.81%), Postives = 78/144 (54.17%), Query Frame = 1 Query: 73 HKSK-GQHILKNP-LLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYF----DICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPG 486 HK K GQ+ L N ++ I++ + I D ILEIGPG G LT L+E K + VE+D + L+++F S ++ DVL+ DL + VANIPY I+SP+ K++ ++ A IM QKE R+ A+ G Sbjct: 5 HKKKYGQNFLNNKDEILNKIIEVSNIDDNDEILEIGPGQGALTSLLVERVKKITCVEIDKDLENTLRKKFSS---KENYTLVMEDVLEVDLRRYINQGTKVVANIPYYITSPIINKIIENKDLIDEAYIMVQKEVGERICAKSG 145
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_DIAST (Ribosomal RNA small subunit methyltransferase A OS=Diaphorobacter sp. (strain TPSY) GN=rsmA PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 3.797e-14 Identity = 56/158 (35.44%), Postives = 77/158 (48.73%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL---------PYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQ 522 K GQH L + ++++IV+ + ++EIGPG LT+ L+E + VELD + L++ Q L VI+ DVLK D P + V N+PY IS+P+ F LL H M QKE R+VA P Y RLSV Q Sbjct: 7 KRFGQHFLSDSGIIDAIVRAIAPEPGQPMVEIGPGLAALTQPLVERLGRLTVVELDRDLAARLRQHGQ-------LDVIESDVLKVDFAQVAQALNAPKIRV-VGNLPYNISTPILFHLLAHVRVIADQHFMLQKEVIDRMVAAPATSAYGRLSVMLQ 156
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_DESPS (Ribosomal RNA small subunit methyltransferase A OS=Desulfotalea psychrophila GN=rsmA PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 3.797e-14 Identity = 53/148 (35.81%), Postives = 77/148 (52.03%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL-PYFDIC------VANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLY 498 K GQ+ L + E+IV+ + D+I EIG G G LT + K V +E+D+ +++ Q P + + +I DVLK + C +AN+PY IS PL FKL+ H+ A IM Q+E A RL+A+PG K Y Sbjct: 20 KRFGQNFLVHKQTAEAIVRAGEVGEDDIITEIGVGLGALTVPMAHQAKHVYGIEIDNG-IIKYHEEEQDLP--DNVTLIHQDVLKVGFGDLAEKCGGKLKILANLPYSISHPLIFKLIEHRDIIPTATIMLQEEVADRLLAKPGTKEY 164
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_SULDN (Ribosomal RNA small subunit methyltransferase A OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=rsmA PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 4.959e-14 Identity = 56/154 (36.36%), Postives = 93/154 (60.39%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVL---KTDL--PYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQ 522 K GQ+ LK+ +++ I++ A + + I+EIGPG G+LTK L++V K V A E+D+ + LQ +F+ + +L++ GDVL K++L +D+ VAN+PY I++ + K L P + ++M Q E A + A GDK++ LS+ TQ Sbjct: 8 KKFGQNFLKDESVLQKIIE-AMPNNDNKIVEIGPGLGDLTKFLVDV-KSVDAFEVDTDLCKVLQNKFEREIATKQLRIHCGDVLTAWKSELIEESYDL-VANLPYYIATNIILKAL-ADPKCKNILVMVQLEVAEKFCANDGDKVFGSLSIITQ 157
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_SHEHH (Ribosomal RNA small subunit methyltransferase A OS=Shewanella halifaxensis (strain HAW-EB4) GN=rsmA PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 4.959e-14 Identity = 58/164 (35.37%), Postives = 80/164 (48.78%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPY-SNRLKVIQGDVLKTDLPYFDICV---------ANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537 K GQ+ L + ++ IV + V++EIGPG LT+ + +I VELD +V R Q+ P ++L++ QGD LK D F+ V N+PY IS+PL F L M QKE +RL A PG K Y RL+V Q H +V Sbjct: 13 KRFGQNFLTDENVINRIVGAISPDNDHVMVEIGPGLAALTEPVASGIDKLIVVELDKDLV----ERLQTHPVLKDKLEIHQGDALKFD---FNQLVREDKQMKVFGNLPYNISTPLMFHLFEFAQHIENMHFMLQKEVVLRLSASPGTKAYGRLTVMAQYHCQV 169
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_RHOPS (Ribosomal RNA small subunit methyltransferase A OS=Rhodopseudomonas palustris (strain BisB5) GN=rsmA PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 4.959e-14 Identity = 56/159 (35.22%), Postives = 84/159 (52.83%), Query Frame = 1 Query: 64 ISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD-LPYFD----ICVANIPYQISSPLTFKLLFHQ---PAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSV 513 ++ KS GQ+ L + L I + AG ++EIGPG G LT+ LL G + VIA+E D R + L+ + Y RL+++ D + D P VAN+PY I++PL L + P + ++MFQ+E A R+VA+ D Y RL+V Sbjct: 19 LAARKSLGQNFLLDLNLTARIARAAGPLDDVTVVEIGPGPGGLTRALLATGARRVIAIERDERALGALEE--IAAHYPGRLEIVCADAMDFDPTPLLGGERAKIVANLPYNIATPLLIGWLCTEPWPPWYDMMVLMFQREVAQRIVAREDDDAYGRLAV 175
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_ACISJ (Ribosomal RNA small subunit methyltransferase A OS=Acidovorax sp. (strain JS42) GN=rsmA PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 4.959e-14 Identity = 55/157 (35.03%), Postives = 75/157 (47.77%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDIC--------VANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQ 522 K GQH L + ++++IV+ + ++EIGPG LT+ L+E + VELD + L++ Q L VI+ DVLK D V N+PY IS+P+ F LL H M QKE R+VA P Y RLSV Q Sbjct: 7 KRFGQHFLSDQGIIDAIVRAIAPEPGQPMVEIGPGLAALTQPLVERLGRLTVVELDRDLAARLRQHGQ-------LDVIESDVLKVDFAQVAQALNASKIRVVGNLPYNISTPILFHLLAHVRVIADQHFMLQKEVIDRMVAAPATSAYGRLSVMLQ 156
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_WIGBR (Ribosomal RNA small subunit methyltransferase A OS=Wigglesworthia glossinidia brevipalpis GN=rsmA PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 6.476e-14 Identity = 51/164 (31.10%), Postives = 82/164 (50.00%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYF--DIC-----VANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546 K GQ+ LK+ +++ I+ K D I+EIGPG G LT + ++ K + A+E+D +V L + + N L +I D++K +L F C ++PY IS L F + + + QKE A R++A+P +K Y +SV Q + V L Sbjct: 6 KKLGQNFLKDKKIIKKIINFINPKYKDKIIEIGPGLGALTIPISKISKSITAIEIDKNLVYFLNK---NKNIKNNLNIINIDIMKLNLKKFFSSFCDPVRIFGSLPYNISVSLMFNFIENYNKIIDMHFVIQKEVAQRILARPNNKHYGYISVIMQYYFYVEKL 166 The following BLAST results are available for this feature:
BLAST of DN617688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DN617688 ID=DN617688; Name=DN617688; organism=Citrus sinensis; type=EST; length=548bpback to top |