DN617688

Overview
NameDN617688
Unique NameDN617688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length548
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_HERAR (Ribosomal RNA small subunit methyltransferase A OS=Herminiimonas arsenicoxydans GN=rsmA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.797e-14
Identity = 53/156 (33.97%), Postives = 77/156 (49.36%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDI-------CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQ 522
            K  GQ+ L +  ++ +I+     +  D ++EIGPG   +T+ LL+    +  VELD  +V  L++ F       +L +   D L+ D     +        V N+PY ISSPL F L    P  +    M QKE   R+VA+PG K Y RLSV  Q
Sbjct:    7 KRFGQNFLTDDGVLHNIILAIDPQPQDTMVEIGPGLAAMTRLLLDGVNQMHVVELDRDLVERLKKTFDP----KKLIIHSADALQFDFSTIPVPAGSKLRVVGNLPYNISSPLLFHLAEMAPHVQDQHFMLQKEVVERMVAEPGSKTYGRLSVMLQ 158          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_HAEDU (Ribosomal RNA small subunit methyltransferase A OS=Haemophilus ducreyi GN=rsmA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.797e-14
Identity = 54/166 (32.53%), Postives = 82/166 (49.40%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPY-SNRLKVIQGDVLKTDL-PYFDIC----------VANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537
            K  GQ+ L +  ++ +IV     ++ D +LEIGPG G LT+ + E  + +  +ELD     +L  R +  P+  ++L VI+ D L+ +   YFD              N+PY IS+PL F L       +    M QKE   RL A P  K Y RL++  Q + +V
Sbjct:   16 KRFGQNFLSDMNVIHNIVAAINPRNEDFLLEIGPGLGALTEPVAEQVEKLTVIELDR----DLAERLRHHPFLHHKLTVIEQDALRFNFRDYFDSLNLNHHQAIRIFGNLPYNISTPLMFHLFKFHDLIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYYCQV 177          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_FUSNN (Ribosomal RNA small subunit methyltransferase A OS=Fusobacterium nucleatum subsp. nucleatum GN=rsmA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.797e-14
Identity = 53/144 (36.81%), Postives = 78/144 (54.17%), Query Frame = 1
Query:   73 HKSK-GQHILKNP-LLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYF----DICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPG 486
            HK K GQ+ L N   ++  I++ + I   D ILEIGPG G LT  L+E  K +  VE+D  +   L+++F S        ++  DVL+ DL  +       VANIPY I+SP+  K++ ++     A IM QKE   R+ A+ G
Sbjct:    5 HKKKYGQNFLNNKDEILNKIIEVSNIDDNDEILEIGPGQGALTSLLVERVKKITCVEIDKDLENTLRKKFSS---KENYTLVMEDVLEVDLRRYINQGTKVVANIPYYITSPIINKIIENKDLIDEAYIMVQKEVGERICAKSG 145          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_DIAST (Ribosomal RNA small subunit methyltransferase A OS=Diaphorobacter sp. (strain TPSY) GN=rsmA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.797e-14
Identity = 56/158 (35.44%), Postives = 77/158 (48.73%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL---------PYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQ 522
            K  GQH L +  ++++IV+    +    ++EIGPG   LT+ L+E    +  VELD  +   L++  Q       L VI+ DVLK D          P   + V N+PY IS+P+ F LL H         M QKE   R+VA P    Y RLSV  Q
Sbjct:    7 KRFGQHFLSDSGIIDAIVRAIAPEPGQPMVEIGPGLAALTQPLVERLGRLTVVELDRDLAARLRQHGQ-------LDVIESDVLKVDFAQVAQALNAPKIRV-VGNLPYNISTPILFHLLAHVRVIADQHFMLQKEVIDRMVAAPATSAYGRLSVMLQ 156          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_DESPS (Ribosomal RNA small subunit methyltransferase A OS=Desulfotalea psychrophila GN=rsmA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.797e-14
Identity = 53/148 (35.81%), Postives = 77/148 (52.03%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL-PYFDIC------VANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLY 498
            K  GQ+ L +    E+IV+   +   D+I EIG G G LT  +    K V  +E+D+  +++     Q  P  + + +I  DVLK       + C      +AN+PY IS PL FKL+ H+     A IM Q+E A RL+A+PG K Y
Sbjct:   20 KRFGQNFLVHKQTAEAIVRAGEVGEDDIITEIGVGLGALTVPMAHQAKHVYGIEIDNG-IIKYHEEEQDLP--DNVTLIHQDVLKVGFGDLAEKCGGKLKILANLPYSISHPLIFKLIEHRDIIPTATIMLQEEVADRLLAKPGTKEY 164          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_SULDN (Ribosomal RNA small subunit methyltransferase A OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=rsmA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.959e-14
Identity = 56/154 (36.36%), Postives = 93/154 (60.39%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVL---KTDL--PYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQ 522
            K  GQ+ LK+  +++ I++ A   + + I+EIGPG G+LTK L++V K V A E+D+ +   LQ +F+    + +L++  GDVL   K++L    +D+ VAN+PY I++ +  K L   P  +  ++M Q E A +  A  GDK++  LS+ TQ
Sbjct:    8 KKFGQNFLKDESVLQKIIE-AMPNNDNKIVEIGPGLGDLTKFLVDV-KSVDAFEVDTDLCKVLQNKFEREIATKQLRIHCGDVLTAWKSELIEESYDL-VANLPYYIATNIILKAL-ADPKCKNILVMVQLEVAEKFCANDGDKVFGSLSIITQ 157          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_SHEHH (Ribosomal RNA small subunit methyltransferase A OS=Shewanella halifaxensis (strain HAW-EB4) GN=rsmA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.959e-14
Identity = 58/164 (35.37%), Postives = 80/164 (48.78%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPY-SNRLKVIQGDVLKTDLPYFDICV---------ANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537
            K  GQ+ L +  ++  IV      +  V++EIGPG   LT+ +      +I VELD  +V     R Q+ P   ++L++ QGD LK D   F+  V          N+PY IS+PL F L            M QKE  +RL A PG K Y RL+V  Q H +V
Sbjct:   13 KRFGQNFLTDENVINRIVGAISPDNDHVMVEIGPGLAALTEPVASGIDKLIVVELDKDLV----ERLQTHPVLKDKLEIHQGDALKFD---FNQLVREDKQMKVFGNLPYNISTPLMFHLFEFAQHIENMHFMLQKEVVLRLSASPGTKAYGRLTVMAQYHCQV 169          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_RHOPS (Ribosomal RNA small subunit methyltransferase A OS=Rhodopseudomonas palustris (strain BisB5) GN=rsmA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.959e-14
Identity = 56/159 (35.22%), Postives = 84/159 (52.83%), Query Frame = 1
Query:   64 ISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD-LPYFD----ICVANIPYQISSPLTFKLLFHQ---PAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSV 513
            ++  KS GQ+ L +  L   I + AG      ++EIGPG G LT+ LL  G + VIA+E D R +  L+    +  Y  RL+++  D +  D  P         VAN+PY I++PL    L  +   P +   ++MFQ+E A R+VA+  D  Y RL+V
Sbjct:   19 LAARKSLGQNFLLDLNLTARIARAAGPLDDVTVVEIGPGPGGLTRALLATGARRVIAIERDERALGALEE--IAAHYPGRLEIVCADAMDFDPTPLLGGERAKIVANLPYNIATPLLIGWLCTEPWPPWYDMMVLMFQREVAQRIVAREDDDAYGRLAV 175          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_ACISJ (Ribosomal RNA small subunit methyltransferase A OS=Acidovorax sp. (strain JS42) GN=rsmA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.959e-14
Identity = 55/157 (35.03%), Postives = 75/157 (47.77%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDIC--------VANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQ 522
            K  GQH L +  ++++IV+    +    ++EIGPG   LT+ L+E    +  VELD  +   L++  Q       L VI+ DVLK D               V N+PY IS+P+ F LL H         M QKE   R+VA P    Y RLSV  Q
Sbjct:    7 KRFGQHFLSDQGIIDAIVRAIAPEPGQPMVEIGPGLAALTQPLVERLGRLTVVELDRDLAARLRQHGQ-------LDVIESDVLKVDFAQVAQALNASKIRVVGNLPYNISTPILFHLLAHVRVIADQHFMLQKEVIDRMVAAPATSAYGRLSVMLQ 156          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_WIGBR (Ribosomal RNA small subunit methyltransferase A OS=Wigglesworthia glossinidia brevipalpis GN=rsmA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.476e-14
Identity = 51/164 (31.10%), Postives = 82/164 (50.00%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYF--DIC-----VANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546
            K  GQ+ LK+  +++ I+     K  D I+EIGPG G LT  + ++ K + A+E+D  +V  L +   +    N L +I  D++K +L  F    C       ++PY IS  L F  + +         + QKE A R++A+P +K Y  +SV  Q +  V  L
Sbjct:    6 KKLGQNFLKDKKIIKKIINFINPKYKDKIIEIGPGLGALTIPISKISKSITAIEIDKNLVYFLNK---NKNIKNNLNIINIDIMKLNLKKFFSSFCDPVRIFGSLPYNISVSLMFNFIENYNKIIDMHFVIQKEVAQRILARPNNKHYGYISVIMQYYFYVEKL 166          
The following BLAST results are available for this feature:
BLAST of DN617688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RSMA_HERAR3.797e-1433.97Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_HAEDU3.797e-1432.53Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_FUSNN3.797e-1436.81Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_DIAST3.797e-1435.44Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_DESPS3.797e-1435.81Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_SULDN4.959e-1436.36Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_SHEHH4.959e-1435.37Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_RHOPS4.959e-1435.22Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_ACISJ4.959e-1435.03Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_WIGBR6.476e-1431.10Ribosomal RNA small subunit methyltransferase A OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I22_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617688 ID=DN617688; Name=DN617688; organism=Citrus sinensis; type=EST; length=548bp
AGGAAGGAGAAAGGAAAGCAGAAAAGTGGACCGTATCAAGGACAAGGACT
AGGAGCAGGAGGTATATCCTTCCACAAATCAAAGGGGCAGCACATTCTGA
AGAACCCTTTGCTTGTGGAGAGCATCGTCCAAAAAGCCGGCATCAAGAGC
ACCGATGTCATTCTTGAGATTGGTCCCGGCACTGGTAATCTCACCAAAAA
GCTTCTGGAAGTTGGCAAGATGGTCATCGCTGTCGAGCTTGACTCTCGTA
TGGTTCTCGAGCTCCAGCGCCGTTTTCAATCCACCCCTTACTCCAACCGT
TTAAAGGTCATTCAGGGTGATGTCCTCAAGACTGATCTTCCCTATTTTGA
TATATGTGTGGCAAACATCCCGTACCAAATCTCCTCCCCACTCACATTCA
AGTTGTTGTTTCACCAACCTGCCTTCAGATGCGCGATTATTATGTTCCAG
AAAGAATTTGCTATGAGACTTGTTGCTCAACCCGGTGACAAGCTCTACTG
TCGTCTTTCTGTGAATACACAACTTCATGCTCGGGTCTCCCACCTCCT
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