DN617688
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_BRASO (Ribosomal RNA small subunit methyltransferase A OS=Bradyrhizobium sp. (strain ORS278) GN=rsmA PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 8.458e-14 Identity = 57/159 (35.85%), Postives = 84/159 (52.83%), Query Frame = 1 Query: 64 ISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL-PYFDI----CVANIPYQISSPLTFKLLFHQ---PAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSV 513 +S K+ GQ+ L + L I + AG ++EIGPG G LT+ LL +G + VIAVE D R + L R + Y RL+++ D D+ PY VAN+PY I++ L L + P + ++MFQ+E A R+VA ++ Y RL V Sbjct: 19 LSARKALGQNFLLDLNLTARIARAAGPLEDATVVEIGPGPGGLTRALLALGARHVIAVEHDERAIPAL--RTIADRYPGRLEIVYTDARTFDVRPYLGSTKAKIVANLPYNIATHLLIGWLSAEPWPPWYEMMVLMFQREVAERIVATENEEAYGRLGV 175
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_BRASB (Ribosomal RNA small subunit methyltransferase A OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=rsmA PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 8.458e-14 Identity = 57/159 (35.85%), Postives = 85/159 (53.46%), Query Frame = 1 Query: 64 ISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL-PYFDI----CVANIPYQISSPLTFKLLFHQ---PAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSV 513 +S K+ GQ+ L + L I + AG ++EIGPG G LT+ LL +G + VIAVE D R + LQ + Y RL+++ D D+ PY VAN+PY I++ L L + P + ++MFQ+E A R+VA+ ++ Y RL V Sbjct: 19 LSARKALGQNFLLDLNLTARIARAAGPLEDATVVEIGPGPGGLTRALLALGARHVIAVEHDERAIPALQAIAER--YPGRLEIVCTDARTFDVRPYLGSTKAKIVANLPYNIATHLLIGWLSAEPWPPWYDMMVLMFQREVAERIVARENEEAYGRLGV 175
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_ACIBL (Ribosomal RNA small subunit methyltransferase A OS=Acidobacteria bacterium (strain Ellin345) GN=rsmA PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 8.458e-14 Identity = 52/172 (30.23%), Postives = 84/172 (48.84%), Query Frame = 1 Query: 85 GQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL---------PYFDI---------CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546 GQ+ L + IV+ G S ++EIGPG G +T L + K +IAVE+D + +L+ R+ +++++ D+L +L P D+ + N+PY I+S + +L A+IM QKE A R+ A+PG + Y LS +QL+ V L Sbjct: 19 GQNFLSDASGALKIVEALGDISDATVVEIGPGRGAITDHLAKRAKRLIAVEIDRVLAAQLRLRYSRL---ENVEILEADILAVELSTVLAQRIGPLRDLRPTKPEKVRIIGNLPYYITSDILLRLFEAHALIDFAVIMVQKEVADRIAAKPGTRDYGLLSATSQLYTHVEKL 187
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_WOLPP (Ribosomal RNA small subunit methyltransferase A OS=Wolbachia pipientis subsp. Culex pipiens (strain wPip) GN=rsmA PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.105e-13 Identity = 52/155 (33.55%), Postives = 82/155 (52.90%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDIC----VANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQL 525 KS GQ+ + + +++ IV AG ++EIGPG G LT+++L K ++++E DS +V ++ + + ++I+ D L C +AN+PY IS L K L + F +MFQKE A R+ A+P K Y LSV +QL Sbjct: 10 KSLGQNFILSNEIIKRIVALAGSLKDFNVIEIGPGYGALTREILAYNPKFLLSIEKDSSLVKHHEQLLNE--HQGKYRIIEADALNVVEKELVECPVKVIANLPYNISVALFLKWLNNIKFFTNLTLMFQKEVAERITAEPNSKDYGSLSVLSQL 162
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_VIBPA (Ribosomal RNA small subunit methyltransferase A OS=Vibrio parahaemolyticus GN=rsmA PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.105e-13 Identity = 55/166 (33.13%), Postives = 87/166 (52.41%), Query Frame = 1 Query: 73 HKSK---GQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKL-LEVGKMVIAVELDSRMVLELQRRFQSTP-YSNRLKVIQGDVLKTDL-----PYFDICV-ANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537 HK++ GQ+ L +P +++ IV K ++EIGPG G +T+ + EV K + +ELD +L R ++ P +++L + +GD ++ D P + + N+PY IS+PL F L + M QKE RL A PG K Y RL+V Q + +V Sbjct: 9 HKARKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEPVGREVDKFTV-IELDR----DLAERLRNHPDLADKLTIHEGDAMRFDFTQLVKPNNKLRIFGNLPYNISTPLMFHLFEFHKDIQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKV 169
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_SHESR (Ribosomal RNA small subunit methyltransferase A OS=Shewanella sp. (strain MR-7) GN=rsmA PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.105e-13 Identity = 53/160 (33.12%), Postives = 75/160 (46.88%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDI------CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537 K GQ+ L + ++ IV + V++EIGPG G LT+ + + VELD +V LQ ++L + QGD L+ D + N+PY IS+PL F L M QKE +RL A PG+K Y RL+V Q +V Sbjct: 13 KRFGQNFLTDDNVINRIVGAIAPDNDHVMVEIGPGLGALTEPVATAIDNLTVVELDRDLVERLQNH---PVLKDKLTIHQGDALQFDFSQLVVPGKKLKVFGNLPYNISTPLMFHLFEFAEQIETMHFMLQKEVVLRLSASPGNKAYGRLTVMAQYFCQV 169
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_SHESM (Ribosomal RNA small subunit methyltransferase A OS=Shewanella sp. (strain MR-4) GN=rsmA PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.105e-13 Identity = 53/160 (33.12%), Postives = 75/160 (46.88%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDI------CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537 K GQ+ L + ++ IV + V++EIGPG G LT+ + + VELD +V LQ ++L + QGD L+ D + N+PY IS+PL F L M QKE +RL A PG+K Y RL+V Q +V Sbjct: 13 KRFGQNFLTDDNVINRIVGAIAPDNDHVMVEIGPGLGALTEPVATAIDNLTVVELDRDLVERLQNH---PVLKDKLTIHQGDALQFDFSQLVVPGKKLKVFGNLPYNISTPLMFHLFEFAEQIETMHFMLQKEVVLRLSASPGNKAYGRLTVMAQYFCQV 169
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_SHESH (Ribosomal RNA small subunit methyltransferase A OS=Shewanella sediminis (strain HAW-EB3) GN=rsmA PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.105e-13 Identity = 54/160 (33.75%), Postives = 75/160 (46.88%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDI------CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537 K GQ+ L + ++ IV + V++EIGPG G LT+ + + VELD +V L+ + ++L + QGD LK D N+PY IS+PL F L M QKE +RL A PG K Y RL+V Q H +V Sbjct: 13 KRFGQNFLTDGNVINRIVGAIAPDNDHVMVEIGPGLGALTEPVANGIDKLTVVELDKDLVERLK---EHPTLKHKLDIHQGDALKFDFSQLVEEGRQMKVFGNLPYNISTPLMFHLFEFAEQIENMHFMLQKEVVLRLSASPGTKAYGRLTVMAQYHCQV 169
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_SHEPA (Ribosomal RNA small subunit methyltransferase A OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=rsmA PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.105e-13 Identity = 56/163 (34.36%), Postives = 79/163 (48.47%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICV---------ANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537 K GQ+ L + ++ IV + V++EIGPG LT+ + +I VELD +V L+ + ++L++ QGD LK D F+ V N+PY IS+PL F L M QKE +RL A PG K Y RL+V Q H +V Sbjct: 13 KRFGQNFLTDENVINRIVGAISPDNDHVMVEIGPGLAALTEPVASGIDKLIVVELDKDLVERLK---EHPVLKDKLEIHQGDALKFD---FNQLVREDKQMKVFGNLPYNISTPLMFHLFEFAQHIENMHFMLQKEVVLRLSASPGTKAYGRLTVMAQYHCQV 169
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_RHOP2 (Ribosomal RNA small subunit methyltransferase A OS=Rhodopseudomonas palustris (strain HaA2) GN=rsmA PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.105e-13 Identity = 56/159 (35.22%), Postives = 84/159 (52.83%), Query Frame = 1 Query: 64 ISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD-LPYFD----ICVANIPYQISSPLTFKLLFHQ---PAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSV 513 ++ KS GQ+ L + L I + AG ++EIGPG G LT+ LL G + VIA+E D R + L+ + Y RL+++ D ++ D P VAN+PY I++PL L + P + ++MFQ+E A R+VA D Y RL+V Sbjct: 19 LAARKSLGQNFLLDLNLTARIARAAGPLDDVTVVEIGPGPGGLTRALLATGARRVIAIERDERALGALEE--IAAHYPGRLEIVCADAMEFDPRPLLGGARARIVANLPYNIATPLLIGWLCAEPWPPWYDMMVLMFQREVAQRIVACEDDDAYGRLAV 175 The following BLAST results are available for this feature:
BLAST of DN617688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DN617688 ID=DN617688; Name=DN617688; organism=Citrus sinensis; type=EST; length=548bpback to top |