DN617688

Overview
NameDN617688
Unique NameDN617688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length548
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_BRASO (Ribosomal RNA small subunit methyltransferase A OS=Bradyrhizobium sp. (strain ORS278) GN=rsmA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.458e-14
Identity = 57/159 (35.85%), Postives = 84/159 (52.83%), Query Frame = 1
Query:   64 ISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL-PYFDI----CVANIPYQISSPLTFKLLFHQ---PAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSV 513
            +S  K+ GQ+ L +  L   I + AG      ++EIGPG G LT+ LL +G + VIAVE D R +  L  R  +  Y  RL+++  D    D+ PY        VAN+PY I++ L    L  +   P +   ++MFQ+E A R+VA   ++ Y RL V
Sbjct:   19 LSARKALGQNFLLDLNLTARIARAAGPLEDATVVEIGPGPGGLTRALLALGARHVIAVEHDERAIPAL--RTIADRYPGRLEIVYTDARTFDVRPYLGSTKAKIVANLPYNIATHLLIGWLSAEPWPPWYEMMVLMFQREVAERIVATENEEAYGRLGV 175          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_BRASB (Ribosomal RNA small subunit methyltransferase A OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=rsmA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.458e-14
Identity = 57/159 (35.85%), Postives = 85/159 (53.46%), Query Frame = 1
Query:   64 ISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL-PYFDI----CVANIPYQISSPLTFKLLFHQ---PAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSV 513
            +S  K+ GQ+ L +  L   I + AG      ++EIGPG G LT+ LL +G + VIAVE D R +  LQ   +   Y  RL+++  D    D+ PY        VAN+PY I++ L    L  +   P +   ++MFQ+E A R+VA+  ++ Y RL V
Sbjct:   19 LSARKALGQNFLLDLNLTARIARAAGPLEDATVVEIGPGPGGLTRALLALGARHVIAVEHDERAIPALQAIAER--YPGRLEIVCTDARTFDVRPYLGSTKAKIVANLPYNIATHLLIGWLSAEPWPPWYDMMVLMFQREVAERIVARENEEAYGRLGV 175          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_ACIBL (Ribosomal RNA small subunit methyltransferase A OS=Acidobacteria bacterium (strain Ellin345) GN=rsmA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.458e-14
Identity = 52/172 (30.23%), Postives = 84/172 (48.84%), Query Frame = 1
Query:   85 GQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL---------PYFDI---------CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546
            GQ+ L +      IV+  G  S   ++EIGPG G +T  L +  K +IAVE+D  +  +L+ R+        +++++ D+L  +L         P  D+          + N+PY I+S +  +L         A+IM QKE A R+ A+PG + Y  LS  +QL+  V  L
Sbjct:   19 GQNFLSDASGALKIVEALGDISDATVVEIGPGRGAITDHLAKRAKRLIAVEIDRVLAAQLRLRYSRL---ENVEILEADILAVELSTVLAQRIGPLRDLRPTKPEKVRIIGNLPYYITSDILLRLFEAHALIDFAVIMVQKEVADRIAAKPGTRDYGLLSATSQLYTHVEKL 187          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_WOLPP (Ribosomal RNA small subunit methyltransferase A OS=Wolbachia pipientis subsp. Culex pipiens (strain wPip) GN=rsmA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.105e-13
Identity = 52/155 (33.55%), Postives = 82/155 (52.90%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDIC----VANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQL 525
            KS GQ+ + +  +++ IV  AG      ++EIGPG G LT+++L    K ++++E DS +V   ++      +  + ++I+ D L         C    +AN+PY IS  L  K L +   F    +MFQKE A R+ A+P  K Y  LSV +QL
Sbjct:   10 KSLGQNFILSNEIIKRIVALAGSLKDFNVIEIGPGYGALTREILAYNPKFLLSIEKDSSLVKHHEQLLNE--HQGKYRIIEADALNVVEKELVECPVKVIANLPYNISVALFLKWLNNIKFFTNLTLMFQKEVAERITAEPNSKDYGSLSVLSQL 162          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_VIBPA (Ribosomal RNA small subunit methyltransferase A OS=Vibrio parahaemolyticus GN=rsmA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.105e-13
Identity = 55/166 (33.13%), Postives = 87/166 (52.41%), Query Frame = 1
Query:   73 HKSK---GQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKL-LEVGKMVIAVELDSRMVLELQRRFQSTP-YSNRLKVIQGDVLKTDL-----PYFDICV-ANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537
            HK++   GQ+ L +P +++ IV     K    ++EIGPG G +T+ +  EV K  + +ELD     +L  R ++ P  +++L + +GD ++ D      P   + +  N+PY IS+PL F L       +    M QKE   RL A PG K Y RL+V  Q + +V
Sbjct:    9 HKARKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEPVGREVDKFTV-IELDR----DLAERLRNHPDLADKLTIHEGDAMRFDFTQLVKPNNKLRIFGNLPYNISTPLMFHLFEFHKDIQDMHFMLQKEVVNRLAAGPGSKAYGRLTVMAQYYCKV 169          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_SHESR (Ribosomal RNA small subunit methyltransferase A OS=Shewanella sp. (strain MR-7) GN=rsmA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.105e-13
Identity = 53/160 (33.12%), Postives = 75/160 (46.88%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDI------CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537
            K  GQ+ L +  ++  IV      +  V++EIGPG G LT+ +      +  VELD  +V  LQ         ++L + QGD L+ D     +         N+PY IS+PL F L            M QKE  +RL A PG+K Y RL+V  Q   +V
Sbjct:   13 KRFGQNFLTDDNVINRIVGAIAPDNDHVMVEIGPGLGALTEPVATAIDNLTVVELDRDLVERLQNH---PVLKDKLTIHQGDALQFDFSQLVVPGKKLKVFGNLPYNISTPLMFHLFEFAEQIETMHFMLQKEVVLRLSASPGNKAYGRLTVMAQYFCQV 169          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_SHESM (Ribosomal RNA small subunit methyltransferase A OS=Shewanella sp. (strain MR-4) GN=rsmA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.105e-13
Identity = 53/160 (33.12%), Postives = 75/160 (46.88%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDI------CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537
            K  GQ+ L +  ++  IV      +  V++EIGPG G LT+ +      +  VELD  +V  LQ         ++L + QGD L+ D     +         N+PY IS+PL F L            M QKE  +RL A PG+K Y RL+V  Q   +V
Sbjct:   13 KRFGQNFLTDDNVINRIVGAIAPDNDHVMVEIGPGLGALTEPVATAIDNLTVVELDRDLVERLQNH---PVLKDKLTIHQGDALQFDFSQLVVPGKKLKVFGNLPYNISTPLMFHLFEFAEQIETMHFMLQKEVVLRLSASPGNKAYGRLTVMAQYFCQV 169          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_SHESH (Ribosomal RNA small subunit methyltransferase A OS=Shewanella sediminis (strain HAW-EB3) GN=rsmA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.105e-13
Identity = 54/160 (33.75%), Postives = 75/160 (46.88%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDI------CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537
            K  GQ+ L +  ++  IV      +  V++EIGPG G LT+ +      +  VELD  +V  L+   +     ++L + QGD LK D               N+PY IS+PL F L            M QKE  +RL A PG K Y RL+V  Q H +V
Sbjct:   13 KRFGQNFLTDGNVINRIVGAIAPDNDHVMVEIGPGLGALTEPVANGIDKLTVVELDKDLVERLK---EHPTLKHKLDIHQGDALKFDFSQLVEEGRQMKVFGNLPYNISTPLMFHLFEFAEQIENMHFMLQKEVVLRLSASPGTKAYGRLTVMAQYHCQV 169          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_SHEPA (Ribosomal RNA small subunit methyltransferase A OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=rsmA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.105e-13
Identity = 56/163 (34.36%), Postives = 79/163 (48.47%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICV---------ANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537
            K  GQ+ L +  ++  IV      +  V++EIGPG   LT+ +      +I VELD  +V  L+   +     ++L++ QGD LK D   F+  V          N+PY IS+PL F L            M QKE  +RL A PG K Y RL+V  Q H +V
Sbjct:   13 KRFGQNFLTDENVINRIVGAISPDNDHVMVEIGPGLAALTEPVASGIDKLIVVELDKDLVERLK---EHPVLKDKLEIHQGDALKFD---FNQLVREDKQMKVFGNLPYNISTPLMFHLFEFAQHIENMHFMLQKEVVLRLSASPGTKAYGRLTVMAQYHCQV 169          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_RHOP2 (Ribosomal RNA small subunit methyltransferase A OS=Rhodopseudomonas palustris (strain HaA2) GN=rsmA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.105e-13
Identity = 56/159 (35.22%), Postives = 84/159 (52.83%), Query Frame = 1
Query:   64 ISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD-LPYFD----ICVANIPYQISSPLTFKLLFHQ---PAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSV 513
            ++  KS GQ+ L +  L   I + AG      ++EIGPG G LT+ LL  G + VIA+E D R +  L+    +  Y  RL+++  D ++ D  P         VAN+PY I++PL    L  +   P +   ++MFQ+E A R+VA   D  Y RL+V
Sbjct:   19 LAARKSLGQNFLLDLNLTARIARAAGPLDDVTVVEIGPGPGGLTRALLATGARRVIAIERDERALGALEE--IAAHYPGRLEIVCADAMEFDPRPLLGGARARIVANLPYNIATPLLIGWLCAEPWPPWYDMMVLMFQREVAQRIVACEDDDAYGRLAV 175          
The following BLAST results are available for this feature:
BLAST of DN617688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RSMA_BRASO8.458e-1435.85Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_BRASB8.458e-1435.85Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_ACIBL8.458e-1430.23Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_WOLPP1.105e-1333.55Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_VIBPA1.105e-1333.13Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_SHESR1.105e-1333.13Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_SHESM1.105e-1333.13Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_SHESH1.105e-1333.75Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_SHEPA1.105e-1334.36Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_RHOP21.105e-1335.22Ribosomal RNA small subunit methyltransferase A OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I22_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617688 ID=DN617688; Name=DN617688; organism=Citrus sinensis; type=EST; length=548bp
AGGAAGGAGAAAGGAAAGCAGAAAAGTGGACCGTATCAAGGACAAGGACT
AGGAGCAGGAGGTATATCCTTCCACAAATCAAAGGGGCAGCACATTCTGA
AGAACCCTTTGCTTGTGGAGAGCATCGTCCAAAAAGCCGGCATCAAGAGC
ACCGATGTCATTCTTGAGATTGGTCCCGGCACTGGTAATCTCACCAAAAA
GCTTCTGGAAGTTGGCAAGATGGTCATCGCTGTCGAGCTTGACTCTCGTA
TGGTTCTCGAGCTCCAGCGCCGTTTTCAATCCACCCCTTACTCCAACCGT
TTAAAGGTCATTCAGGGTGATGTCCTCAAGACTGATCTTCCCTATTTTGA
TATATGTGTGGCAAACATCCCGTACCAAATCTCCTCCCCACTCACATTCA
AGTTGTTGTTTCACCAACCTGCCTTCAGATGCGCGATTATTATGTTCCAG
AAAGAATTTGCTATGAGACTTGTTGCTCAACCCGGTGACAAGCTCTACTG
TCGTCTTTCTGTGAATACACAACTTCATGCTCGGGTCTCCCACCTCCT
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