DN617688
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_RHISN (Ribosomal RNA small subunit methyltransferase A OS=Rhizobium sp. (strain NGR234) GN=rsmA PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.105e-13 Identity = 51/154 (33.12%), Postives = 79/154 (51.30%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFD----ICVANIPYQISSPLTFKLLFHQ---PAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSV 513 K+ GQ+ L + L + I + AG ++E+GPG G LT+ +L +G + V+A+E D R + L S Y RL V++GD LK D +AN+PY + + L L + P ++ +M Q+E +R+VA D Y RL V Sbjct: 23 KALGQNFLLDLNLTQKIARTAGPLEDVTVIEVGPGPGGLTRAILALGARKVVAIERDPRCLPALAE--ISAHYPGRLDVVEGDALKVDFERLAEGPVRIIANLPYNVGTQLLVNWLLPERWPPFWQSMTLMIQREVGLRIVAGADDDHYGRLGV 174
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_RHIME (Ribosomal RNA small subunit methyltransferase A OS=Rhizobium meliloti GN=rsmA PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.105e-13 Identity = 52/154 (33.77%), Postives = 78/154 (50.65%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFD----ICVANIPYQISSPLTFKLL---FHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSV 513 K+ GQ+ L + L + I + AG ++E+GPG G LT+ +L +G K V+A+E DSR + L Y RL +I+ D LK D +AN+PY + + L L P ++ +MFQ+E +R+VA D Y RL V Sbjct: 23 KALGQNFLLDLNLTQKIARTAGPLEDVTVIEVGPGPGGLTRAILALGAKKVVAIERDSRCLPALAE--IGAHYPGRLDIIEDDALKVDFEALADGPVRIIANLPYNVGTQLLVNWLLPGLWPPFWQSMTLMFQREVGLRIVAGADDDHYGRLGV 174
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_EHRRG (Ribosomal RNA small subunit methyltransferase A OS=Ehrlichia ruminantium (strain Gardel) GN=rsmA PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.105e-13 Identity = 55/160 (34.38%), Postives = 85/160 (53.12%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL-----PYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537 K Q + + + + IV AG S I+EIGPG G +T +L+ K +I++E DSR++ + + + + + I D L DL P + +AN+PY I++ L K + + F +MFQKE A R++AQP +K Y LS+ TQL A V Sbjct: 11 KELSQCFIHSTDITDKIVNYAGNISNFSIIEIGPGLGTMTYSILKKNPKKLISIEKDSRLLPIHDKIIKE--FQGKYEFILSDALDIDLRNIAKPPVKV-IANLPYSIATLLLIKWINYINFFHSFTLMFQKEVADRIIAQPNNKNYGTLSILTQLFADV 167
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_BRUME (Ribosomal RNA small subunit methyltransferase A OS=Brucella melitensis GN=rsmA PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.105e-13 Identity = 53/155 (34.19%), Postives = 76/155 (49.03%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYF------DICVANIPYQISSPLTFKLLFHQ---PAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSV 513 KS GQ+ L + L I ++AG ++E+GPG G LT+ LL G V A+E D R + L + Y RL++I GD L+ D VAN+PY + + L L + P + +MFQ+E A R+VA+ Y RL V Sbjct: 22 KSLGQNFLFDLNLTSKIARQAGDLRDQPVIEVGPGPGGLTRALLAQGAYVTAIERDDRCLEALAE--IAAHYPGRLRIIAGDALEQDFTALFPEGPKPRIVANLPYNVGTQLLLNWLLVEPWPPFYSSMTLMFQREVAERIVAKLDSDHYGRLGV 174
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_VIBCH (Ribosomal RNA small subunit methyltransferase A OS=Vibrio cholerae GN=rsmA PE=3 SV=2) HSP 1 Score: 75.8702 bits (185), Expect = 1.443e-13 Identity = 56/166 (33.73%), Postives = 87/166 (52.41%), Query Frame = 1 Query: 73 HKSK---GQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKL-LEVGKMVIAVELDSRMVLELQRRFQSTP-YSNRLKVIQGDVLKTDL-----PYFDICV-ANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537 HK++ GQ+ L +P +++ IV K ++EIGPG G +T+ + EV K + +ELD +L R ++ P +++L + +GD ++ D P + V N+PY IS+PL F L + M QKE RL A PG K Y RL+V Q + +V Sbjct: 9 HKARKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEPVGREVDKFTV-IELDR----DLAERLRNHPELASKLTIHEGDAMRFDFKQLVKPNNKLRVFGNLPYNISTPLMFHLFEFHRDIQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKV 169
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_VIBC3 (Ribosomal RNA small subunit methyltransferase A OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=rsmA PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 1.443e-13 Identity = 56/166 (33.73%), Postives = 87/166 (52.41%), Query Frame = 1 Query: 73 HKSK---GQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKL-LEVGKMVIAVELDSRMVLELQRRFQSTP-YSNRLKVIQGDVLKTDL-----PYFDICV-ANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537 HK++ GQ+ L +P +++ IV K ++EIGPG G +T+ + EV K + +ELD +L R ++ P +++L + +GD ++ D P + V N+PY IS+PL F L + M QKE RL A PG K Y RL+V Q + +V Sbjct: 9 HKARKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEPVGREVDKFTV-IELDR----DLAERLRNHPELASKLTIHEGDAMRFDFKQLVKPNNKLRVFGNLPYNISTPLMFHLFEFHRDIQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKV 169
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_UREPA (Ribosomal RNA small subunit methyltransferase A OS=Ureaplasma parvum GN=rsmA PE=3 SV=2) HSP 1 Score: 75.8702 bits (185), Expect = 1.443e-13 Identity = 55/169 (32.54%), Postives = 83/169 (49.11%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDI------------CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546 K GQ+ L + + IV A I D+ILEIGPG G +T+ L++ ++IA+ELD R+ L+ +++ + +I DVL DL + VAN+PY ISS + K++ A IM QKE A R+ A+ + Y +V QL + L Sbjct: 19 KKMGQNFLLSNNIKNKIVDVANINKDDLILEIGPGWGAITEILVQKTNILIAIELDKRLYAHLKTYIKTSNF----HIINNDVLCVDLDNLILDYNNTQKIQKIKVVANLPYAISSKIVLKII-QSKLINDAYIMVQKEMAERIGAKVNTRGYNAFTVLVQLFCKTKIL 182
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_UREP2 (Ribosomal RNA small subunit methyltransferase A OS=Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 / NCTC 11736) GN=rsmA PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 1.443e-13 Identity = 55/169 (32.54%), Postives = 83/169 (49.11%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDI------------CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546 K GQ+ L + + IV A I D+ILEIGPG G +T+ L++ ++IA+ELD R+ L+ +++ + +I DVL DL + VAN+PY ISS + K++ A IM QKE A R+ A+ + Y +V QL + L Sbjct: 19 KKMGQNFLLSNNIKNKIVDVANINKDDLILEIGPGWGAITEILVQKTNILIAIELDKRLYAHLKTYIKTSNF----HIINNDVLCVDLDNLILDYNNTQKIQKIKVVANLPYAISSKIVLKII-QSKLINDAYIMVQKEMAERIGAKVNTRGYNAFTVLVQLFCKTKIL 182
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_SHEWM (Ribosomal RNA small subunit methyltransferase A OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=rsmA PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 1.443e-13 Identity = 53/160 (33.12%), Postives = 74/160 (46.25%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDI------CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537 K GQ+ L + ++ IV + V++EIGPG LT+ + + VELD +V LQ + ++L + QGD L+ D N+PY IS+PL F L M QKE +RL A PG K Y RL+V Q H +V Sbjct: 13 KRFGQNFLTDHNVINRIVGAISPDNDHVMVEIGPGLAALTEPVANAIDKLTVVELDKDLVARLQ---EHPTLKDKLDIHQGDALQFDFSQLVEEGRQMKVFGNLPYNISTPLMFHLFEFAEQIENMHFMLQKEVVLRLSASPGTKAYGRLTVMAQYHCQV 169
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_RHOFD (Ribosomal RNA small subunit methyltransferase A OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=rsmA PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 1.443e-13 Identity = 56/157 (35.67%), Postives = 76/157 (48.41%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDIC--------VANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQ 522 K GQH L + ++E+IV G + ++EIGPG LT+ L+E + +ELD +L R ++ P +L VI+ DVLK D V N+PY IS+P+ F LL M QKE R+VA P Y RLSV Q Sbjct: 7 KRFGQHFLTDGAMIEAIVDAIGPRPGQAMVEIGPGLAALTQPLVERLGQLTVIELDR----DLAARLRAHP---QLVVIESDVLKVDFAQVAQALTTTKLRVVGNLPYNISTPILFHLLNFIDVIEDQHFMLQKEVIDRMVAGPCTAAYGRLSVMLQ 156 The following BLAST results are available for this feature:
BLAST of DN617688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DN617688 ID=DN617688; Name=DN617688; organism=Citrus sinensis; type=EST; length=548bpback to top |