DN617688

Overview
NameDN617688
Unique NameDN617688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length548
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_RHISN (Ribosomal RNA small subunit methyltransferase A OS=Rhizobium sp. (strain NGR234) GN=rsmA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.105e-13
Identity = 51/154 (33.12%), Postives = 79/154 (51.30%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFD----ICVANIPYQISSPLTFKLLFHQ---PAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSV 513
            K+ GQ+ L +  L + I + AG      ++E+GPG G LT+ +L +G + V+A+E D R +  L     S  Y  RL V++GD LK D           +AN+PY + + L    L  +   P ++   +M Q+E  +R+VA   D  Y RL V
Sbjct:   23 KALGQNFLLDLNLTQKIARTAGPLEDVTVIEVGPGPGGLTRAILALGARKVVAIERDPRCLPALAE--ISAHYPGRLDVVEGDALKVDFERLAEGPVRIIANLPYNVGTQLLVNWLLPERWPPFWQSMTLMIQREVGLRIVAGADDDHYGRLGV 174          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_RHIME (Ribosomal RNA small subunit methyltransferase A OS=Rhizobium meliloti GN=rsmA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.105e-13
Identity = 52/154 (33.77%), Postives = 78/154 (50.65%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFD----ICVANIPYQISSPLTFKLL---FHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSV 513
            K+ GQ+ L +  L + I + AG      ++E+GPG G LT+ +L +G K V+A+E DSR +  L        Y  RL +I+ D LK D           +AN+PY + + L    L      P ++   +MFQ+E  +R+VA   D  Y RL V
Sbjct:   23 KALGQNFLLDLNLTQKIARTAGPLEDVTVIEVGPGPGGLTRAILALGAKKVVAIERDSRCLPALAE--IGAHYPGRLDIIEDDALKVDFEALADGPVRIIANLPYNVGTQLLVNWLLPGLWPPFWQSMTLMFQREVGLRIVAGADDDHYGRLGV 174          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_EHRRG (Ribosomal RNA small subunit methyltransferase A OS=Ehrlichia ruminantium (strain Gardel) GN=rsmA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.105e-13
Identity = 55/160 (34.38%), Postives = 85/160 (53.12%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL-----PYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537
            K   Q  + +  + + IV  AG  S   I+EIGPG G +T  +L+   K +I++E DSR++    +  +   +  + + I  D L  DL     P   + +AN+PY I++ L  K + +   F    +MFQKE A R++AQP +K Y  LS+ TQL A V
Sbjct:   11 KELSQCFIHSTDITDKIVNYAGNISNFSIIEIGPGLGTMTYSILKKNPKKLISIEKDSRLLPIHDKIIKE--FQGKYEFILSDALDIDLRNIAKPPVKV-IANLPYSIATLLLIKWINYINFFHSFTLMFQKEVADRIIAQPNNKNYGTLSILTQLFADV 167          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_BRUME (Ribosomal RNA small subunit methyltransferase A OS=Brucella melitensis GN=rsmA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.105e-13
Identity = 53/155 (34.19%), Postives = 76/155 (49.03%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYF------DICVANIPYQISSPLTFKLLFHQ---PAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSV 513
            KS GQ+ L +  L   I ++AG      ++E+GPG G LT+ LL  G  V A+E D R +  L     +  Y  RL++I GD L+ D             VAN+PY + + L    L  +   P +    +MFQ+E A R+VA+     Y RL V
Sbjct:   22 KSLGQNFLFDLNLTSKIARQAGDLRDQPVIEVGPGPGGLTRALLAQGAYVTAIERDDRCLEALAE--IAAHYPGRLRIIAGDALEQDFTALFPEGPKPRIVANLPYNVGTQLLLNWLLVEPWPPFYSSMTLMFQREVAERIVAKLDSDHYGRLGV 174          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_VIBCH (Ribosomal RNA small subunit methyltransferase A OS=Vibrio cholerae GN=rsmA PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.443e-13
Identity = 56/166 (33.73%), Postives = 87/166 (52.41%), Query Frame = 1
Query:   73 HKSK---GQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKL-LEVGKMVIAVELDSRMVLELQRRFQSTP-YSNRLKVIQGDVLKTDL-----PYFDICV-ANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537
            HK++   GQ+ L +P +++ IV     K    ++EIGPG G +T+ +  EV K  + +ELD     +L  R ++ P  +++L + +GD ++ D      P   + V  N+PY IS+PL F L       +    M QKE   RL A PG K Y RL+V  Q + +V
Sbjct:    9 HKARKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEPVGREVDKFTV-IELDR----DLAERLRNHPELASKLTIHEGDAMRFDFKQLVKPNNKLRVFGNLPYNISTPLMFHLFEFHRDIQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKV 169          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_VIBC3 (Ribosomal RNA small subunit methyltransferase A OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=rsmA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.443e-13
Identity = 56/166 (33.73%), Postives = 87/166 (52.41%), Query Frame = 1
Query:   73 HKSK---GQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKL-LEVGKMVIAVELDSRMVLELQRRFQSTP-YSNRLKVIQGDVLKTDL-----PYFDICV-ANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537
            HK++   GQ+ L +P +++ IV     K    ++EIGPG G +T+ +  EV K  + +ELD     +L  R ++ P  +++L + +GD ++ D      P   + V  N+PY IS+PL F L       +    M QKE   RL A PG K Y RL+V  Q + +V
Sbjct:    9 HKARKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEPVGREVDKFTV-IELDR----DLAERLRNHPELASKLTIHEGDAMRFDFKQLVKPNNKLRVFGNLPYNISTPLMFHLFEFHRDIQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKV 169          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_UREPA (Ribosomal RNA small subunit methyltransferase A OS=Ureaplasma parvum GN=rsmA PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.443e-13
Identity = 55/169 (32.54%), Postives = 83/169 (49.11%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDI------------CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546
            K  GQ+ L +  +   IV  A I   D+ILEIGPG G +T+ L++   ++IA+ELD R+   L+   +++ +     +I  DVL  DL    +             VAN+PY ISS +  K++        A IM QKE A R+ A+   + Y   +V  QL  +   L
Sbjct:   19 KKMGQNFLLSNNIKNKIVDVANINKDDLILEIGPGWGAITEILVQKTNILIAIELDKRLYAHLKTYIKTSNF----HIINNDVLCVDLDNLILDYNNTQKIQKIKVVANLPYAISSKIVLKII-QSKLINDAYIMVQKEMAERIGAKVNTRGYNAFTVLVQLFCKTKIL 182          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_UREP2 (Ribosomal RNA small subunit methyltransferase A OS=Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 / NCTC 11736) GN=rsmA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.443e-13
Identity = 55/169 (32.54%), Postives = 83/169 (49.11%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDI------------CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546
            K  GQ+ L +  +   IV  A I   D+ILEIGPG G +T+ L++   ++IA+ELD R+   L+   +++ +     +I  DVL  DL    +             VAN+PY ISS +  K++        A IM QKE A R+ A+   + Y   +V  QL  +   L
Sbjct:   19 KKMGQNFLLSNNIKNKIVDVANINKDDLILEIGPGWGAITEILVQKTNILIAIELDKRLYAHLKTYIKTSNF----HIINNDVLCVDLDNLILDYNNTQKIQKIKVVANLPYAISSKIVLKII-QSKLINDAYIMVQKEMAERIGAKVNTRGYNAFTVLVQLFCKTKIL 182          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_SHEWM (Ribosomal RNA small subunit methyltransferase A OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=rsmA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.443e-13
Identity = 53/160 (33.12%), Postives = 74/160 (46.25%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDI------CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537
            K  GQ+ L +  ++  IV      +  V++EIGPG   LT+ +      +  VELD  +V  LQ   +     ++L + QGD L+ D               N+PY IS+PL F L            M QKE  +RL A PG K Y RL+V  Q H +V
Sbjct:   13 KRFGQNFLTDHNVINRIVGAISPDNDHVMVEIGPGLAALTEPVANAIDKLTVVELDKDLVARLQ---EHPTLKDKLDIHQGDALQFDFSQLVEEGRQMKVFGNLPYNISTPLMFHLFEFAEQIENMHFMLQKEVVLRLSASPGTKAYGRLTVMAQYHCQV 169          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_RHOFD (Ribosomal RNA small subunit methyltransferase A OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=rsmA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.443e-13
Identity = 56/157 (35.67%), Postives = 76/157 (48.41%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDIC--------VANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQ 522
            K  GQH L +  ++E+IV   G +    ++EIGPG   LT+ L+E    +  +ELD     +L  R ++ P   +L VI+ DVLK D               V N+PY IS+P+ F LL           M QKE   R+VA P    Y RLSV  Q
Sbjct:    7 KRFGQHFLTDGAMIEAIVDAIGPRPGQAMVEIGPGLAALTQPLVERLGQLTVIELDR----DLAARLRAHP---QLVVIESDVLKVDFAQVAQALTTTKLRVVGNLPYNISTPILFHLLNFIDVIEDQHFMLQKEVIDRMVAGPCTAAYGRLSVMLQ 156          
The following BLAST results are available for this feature:
BLAST of DN617688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RSMA_RHISN1.105e-1333.12Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_RHIME1.105e-1333.77Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_EHRRG1.105e-1334.38Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_BRUME1.105e-1334.19Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_VIBCH1.443e-1333.73Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_VIBC31.443e-1333.73Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_UREPA1.443e-1332.54Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_UREP21.443e-1332.54Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_SHEWM1.443e-1333.13Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_RHOFD1.443e-1335.67Ribosomal RNA small subunit methyltransferase A OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I22_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617688 ID=DN617688; Name=DN617688; organism=Citrus sinensis; type=EST; length=548bp
AGGAAGGAGAAAGGAAAGCAGAAAAGTGGACCGTATCAAGGACAAGGACT
AGGAGCAGGAGGTATATCCTTCCACAAATCAAAGGGGCAGCACATTCTGA
AGAACCCTTTGCTTGTGGAGAGCATCGTCCAAAAAGCCGGCATCAAGAGC
ACCGATGTCATTCTTGAGATTGGTCCCGGCACTGGTAATCTCACCAAAAA
GCTTCTGGAAGTTGGCAAGATGGTCATCGCTGTCGAGCTTGACTCTCGTA
TGGTTCTCGAGCTCCAGCGCCGTTTTCAATCCACCCCTTACTCCAACCGT
TTAAAGGTCATTCAGGGTGATGTCCTCAAGACTGATCTTCCCTATTTTGA
TATATGTGTGGCAAACATCCCGTACCAAATCTCCTCCCCACTCACATTCA
AGTTGTTGTTTCACCAACCTGCCTTCAGATGCGCGATTATTATGTTCCAG
AAAGAATTTGCTATGAGACTTGTTGCTCAACCCGGTGACAAGCTCTACTG
TCGTCTTTCTGTGAATACACAACTTCATGCTCGGGTCTCCCACCTCCT
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