DN617688
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_MYCA5 (Ribosomal RNA small subunit methyltransferase A OS=Mycoplasma arthritidis (strain 158L3-1) GN=rsmA PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 1.884e-13 Identity = 55/159 (34.59%), Postives = 83/159 (52.20%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFD-----ICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537 K GQ+ L N + ++IV A + +VI EIGPG G LT + E+ K +IA E+D+ + +L Q++ ++ I D L FD + + NIPY I+S + FKL+ + + A +M Q E A RLVA P K Y +L+V+ V Sbjct: 7 KRFGQNFLINKAIQKAIVDVACVDDENVI-EIGPGLGALTDLIKELSKELIAYEIDNDLFKKLLVENQNS----NVRFINEDFLNAT---FDEKKEWVVIGNIPYNITSEILFKLIENHSILKKATLMVQDEVANRLVAMPKTKEYSKLTVSVNFVGNV 157
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_COLP3 (Ribosomal RNA small subunit methyltransferase A OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=rsmA PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 1.884e-13 Identity = 53/161 (32.92%), Postives = 77/161 (47.83%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPY-SNRLKVIQGDVLKTDLPYFDI------CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537 K GQ+ L N ++ IV + + ++EIGPG G LT+ ++E + VELD +L R + P+ + L + + D LK D N+PY IS+PL F LL + + M QKE R+ A P K Y RLS+ TQ +V Sbjct: 13 KRFGQNFLHNDAVISDIVDAINPEPGENLIEIGPGLGALTEPVIERAGKLSVVELDR----DLAHRLRHHPFLAKDLTIYETDALKFDFSELATEEQPLRIFGNLPYNISTPLIFHLLTFKDKVKDMHFMLQKEVVERMAAGPHCKAYGRLSIMTQYQCQV 169
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_BURCJ (Ribosomal RNA small subunit methyltransferase A OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=rsmA PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 1.884e-13 Identity = 60/162 (37.04%), Postives = 81/162 (50.00%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLE----VGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL---------PYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQ 522 K GQ+ L + +++SIV G ++EIGPG G LT+ L+E + AVELD ++ LQ+RF + L++ GD L D P I V N+PY ISSPL F L+ A M Q E R+VA+PG K + RLSV Q Sbjct: 14 KRFGQNFLVDHGVIDSIVATIGPARGQRMVEIGPGLGALTEPLIERLATPESPLHAVELDRDLIGRLQQRFGAL-----LELHAGDALAFDFRSLAAPGDKPSLRI-VGNLPYNISSPLLFHLMTFADAVVDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQ 169
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_ANASK (Ribosomal RNA small subunit methyltransferase A OS=Anaeromyxobacter sp. (strain K) GN=rsmA PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 1.884e-13 Identity = 54/172 (31.40%), Postives = 84/172 (48.84%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDIC-----------------VANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVS 540 KS GQ+ L + +++ I + A ++ D +LE+G G G+LT +LL G V AVE D MV L+ +R+ +++ D + D Y D+ V N+PY ++SP+ F +L A+ + Q+E A RL A P + + LSV Q A VS Sbjct: 21 KSWGQNFLGDEAVLDDIARLAAPRAGDAVLELGAGLGHLTARLLARGARVAAVERDRDMVRVLRGEL-----GDRITLLEADAARLD--YADLAARFGAAAAAGEGPRLAVVGNLPYHLTSPILFSILDQVAHVSRAVFLLQREVAERLAAPPASRDWGVLSVLLQREADVS 185
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_ANAD2 (Ribosomal RNA small subunit methyltransferase A OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=rsmA PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 1.884e-13 Identity = 54/172 (31.40%), Postives = 84/172 (48.84%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDIC-----------------VANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVS 540 KS GQ+ L + +++ I + A ++ D +LE+G G G+LT +LL G V AVE D MV L+ +R+ +++ D + D Y D+ V N+PY ++SP+ F +L A+ + Q+E A RL A P + + LSV Q A VS Sbjct: 21 KSWGQNFLGDEAVLDDIARLAAPRAGDAVLELGAGLGHLTARLLARGARVAAVERDRDMVRVLRGEL-----GDRITLLEADAARLD--YADLAARFGAAAAAGEGPRLAVVGNLPYHLTSPILFSILDQVAHVSRAVFLLQREVAERLAAPPASRDWGVLSVLLQREADVS 185
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_ACTP7 (Ribosomal RNA small subunit methyltransferase A OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=rsmA PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 1.884e-13 Identity = 54/166 (32.53%), Postives = 80/166 (48.19%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSN-RLKVIQGDVLKTDL-PYFDIC----------VANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537 K GQ+ L + ++ +IV K+ +LEIGPG G LT+ + E + VELD +L R + P+ N +L +I+ D L+ + YF+ N+PY IS+PL F L + M QKE RL A P K Y RL++ Q + +V Sbjct: 16 KRFGQNFLHDMNVIHNIVSAINPKNGQFLLEIGPGLGALTEPVAEQVDKLTVVELDR----DLAERLRHHPFLNHKLTIIEQDALRFNFREYFESLELREGEGVRVFGNLPYNISTPLMFHLFKFHDLIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYYCQV 177
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_ACTP2 (Ribosomal RNA small subunit methyltransferase A OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=rsmA PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 1.884e-13 Identity = 54/166 (32.53%), Postives = 80/166 (48.19%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSN-RLKVIQGDVLKTDL-PYFDIC----------VANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537 K GQ+ L + ++ +IV K+ +LEIGPG G LT+ + E + VELD +L R + P+ N +L +I+ D L+ + YF+ N+PY IS+PL F L + M QKE RL A P K Y RL++ Q + +V Sbjct: 16 KRFGQNFLHDMNVIHNIVSAINPKNGQFLLEIGPGLGALTEPVAEQVDKLTVVELDR----DLAERLRHHPFLNHKLTIIEQDALRFNFREYFESLELREGEGVRVFGNLPYNISTPLMFHLFKFHDLIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYYCQV 177
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_YERPY (Ribosomal RNA small subunit methyltransferase A OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=rsmA PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 2.461e-13 Identity = 55/166 (33.13%), Postives = 77/166 (46.39%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQR----RFQSTPY-SNRLKVIQGDVLKTDLPYFDI-------CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537 K GQ+ L + +++SIV + ++EIGPG G LT+ +A +D V+EL R R S P ++L + Q D +K + N+PY IS+PL F L + A R M QKE RLVA P K Y RL+V Q + V Sbjct: 13 KRFGQNFLNDQFVIDSIVSAIHPVPGEAVVEIGPGLGALTEP--------VAARMDHMTVIELDRDLAARLASHPQLKDKLTIHQQDAMKVNFSELSEQAGQPLRVFGNLPYNISTPLMFHLFSYTDAIRDMHFMLQKEVVNRLVAGPNSKAYGRLTVMAQYYCNV 170
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_YERPS (Ribosomal RNA small subunit methyltransferase A OS=Yersinia pseudotuberculosis GN=rsmA PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 2.461e-13 Identity = 55/166 (33.13%), Postives = 77/166 (46.39%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQR----RFQSTPY-SNRLKVIQGDVLKTDLPYFDI-------CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537 K GQ+ L + +++SIV + ++EIGPG G LT+ +A +D V+EL R R S P ++L + Q D +K + N+PY IS+PL F L + A R M QKE RLVA P K Y RL+V Q + V Sbjct: 13 KRFGQNFLNDQFVIDSIVSAIHPVPGEAVVEIGPGLGALTEP--------VAARMDHMTVIELDRDLAARLASHPQLKDKLTIHQQDAMKVNFSELSEQAGQPLRVFGNLPYNISTPLMFHLFSYTDAIRDMHFMLQKEVVNRLVAGPNSKAYGRLTVMAQYYCNV 170
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_YERPP (Ribosomal RNA small subunit methyltransferase A OS=Yersinia pestis (strain Pestoides F) GN=rsmA PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 2.461e-13 Identity = 55/166 (33.13%), Postives = 77/166 (46.39%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQR----RFQSTPY-SNRLKVIQGDVLKTDLPYFDI-------CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537 K GQ+ L + +++SIV + ++EIGPG G LT+ +A +D V+EL R R S P ++L + Q D +K + N+PY IS+PL F L + A R M QKE RLVA P K Y RL+V Q + V Sbjct: 13 KRFGQNFLNDQFVIDSIVSAIHPVPGEAVVEIGPGLGALTEP--------VAARMDHMTVIELDRDLAARLASHPQLKDKLTIHQQDAMKVNFSELSEQAGQPLRVFGNLPYNISTPLMFHLFSYTDAIRDMHFMLQKEVVNRLVAGPNSKTYGRLTVMAQYYCNV 170 The following BLAST results are available for this feature:
BLAST of DN617688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DN617688 ID=DN617688; Name=DN617688; organism=Citrus sinensis; type=EST; length=548bpback to top |