DN617688

Overview
NameDN617688
Unique NameDN617688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length548
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_MYCA5 (Ribosomal RNA small subunit methyltransferase A OS=Mycoplasma arthritidis (strain 158L3-1) GN=rsmA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.884e-13
Identity = 55/159 (34.59%), Postives = 83/159 (52.20%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFD-----ICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537
            K  GQ+ L N  + ++IV  A +   +VI EIGPG G LT  + E+ K +IA E+D+ +  +L    Q++     ++ I  D L      FD     + + NIPY I+S + FKL+ +    + A +M Q E A RLVA P  K Y +L+V+      V
Sbjct:    7 KRFGQNFLINKAIQKAIVDVACVDDENVI-EIGPGLGALTDLIKELSKELIAYEIDNDLFKKLLVENQNS----NVRFINEDFLNAT---FDEKKEWVVIGNIPYNITSEILFKLIENHSILKKATLMVQDEVANRLVAMPKTKEYSKLTVSVNFVGNV 157          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_COLP3 (Ribosomal RNA small subunit methyltransferase A OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=rsmA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.884e-13
Identity = 53/161 (32.92%), Postives = 77/161 (47.83%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPY-SNRLKVIQGDVLKTDLPYFDI------CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537
            K  GQ+ L N  ++  IV     +  + ++EIGPG G LT+ ++E    +  VELD     +L  R +  P+ +  L + + D LK D               N+PY IS+PL F LL  +   +    M QKE   R+ A P  K Y RLS+ TQ   +V
Sbjct:   13 KRFGQNFLHNDAVISDIVDAINPEPGENLIEIGPGLGALTEPVIERAGKLSVVELDR----DLAHRLRHHPFLAKDLTIYETDALKFDFSELATEEQPLRIFGNLPYNISTPLIFHLLTFKDKVKDMHFMLQKEVVERMAAGPHCKAYGRLSIMTQYQCQV 169          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_BURCJ (Ribosomal RNA small subunit methyltransferase A OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=rsmA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.884e-13
Identity = 60/162 (37.04%), Postives = 81/162 (50.00%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLE----VGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL---------PYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQ 522
            K  GQ+ L +  +++SIV   G      ++EIGPG G LT+ L+E        + AVELD  ++  LQ+RF +      L++  GD L  D          P   I V N+PY ISSPL F L+    A      M Q E   R+VA+PG K + RLSV  Q
Sbjct:   14 KRFGQNFLVDHGVIDSIVATIGPARGQRMVEIGPGLGALTEPLIERLATPESPLHAVELDRDLIGRLQQRFGAL-----LELHAGDALAFDFRSLAAPGDKPSLRI-VGNLPYNISSPLLFHLMTFADAVVDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQ 169          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_ANASK (Ribosomal RNA small subunit methyltransferase A OS=Anaeromyxobacter sp. (strain K) GN=rsmA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.884e-13
Identity = 54/172 (31.40%), Postives = 84/172 (48.84%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDIC-----------------VANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVS 540
            KS GQ+ L +  +++ I + A  ++ D +LE+G G G+LT +LL  G  V AVE D  MV  L+         +R+ +++ D  + D  Y D+                  V N+PY ++SP+ F +L        A+ + Q+E A RL A P  + +  LSV  Q  A VS
Sbjct:   21 KSWGQNFLGDEAVLDDIARLAAPRAGDAVLELGAGLGHLTARLLARGARVAAVERDRDMVRVLRGEL-----GDRITLLEADAARLD--YADLAARFGAAAAAGEGPRLAVVGNLPYHLTSPILFSILDQVAHVSRAVFLLQREVAERLAAPPASRDWGVLSVLLQREADVS 185          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_ANAD2 (Ribosomal RNA small subunit methyltransferase A OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=rsmA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.884e-13
Identity = 54/172 (31.40%), Postives = 84/172 (48.84%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDIC-----------------VANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVS 540
            KS GQ+ L +  +++ I + A  ++ D +LE+G G G+LT +LL  G  V AVE D  MV  L+         +R+ +++ D  + D  Y D+                  V N+PY ++SP+ F +L        A+ + Q+E A RL A P  + +  LSV  Q  A VS
Sbjct:   21 KSWGQNFLGDEAVLDDIARLAAPRAGDAVLELGAGLGHLTARLLARGARVAAVERDRDMVRVLRGEL-----GDRITLLEADAARLD--YADLAARFGAAAAAGEGPRLAVVGNLPYHLTSPILFSILDQVAHVSRAVFLLQREVAERLAAPPASRDWGVLSVLLQREADVS 185          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_ACTP7 (Ribosomal RNA small subunit methyltransferase A OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=rsmA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.884e-13
Identity = 54/166 (32.53%), Postives = 80/166 (48.19%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSN-RLKVIQGDVLKTDL-PYFDIC----------VANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537
            K  GQ+ L +  ++ +IV     K+   +LEIGPG G LT+ + E    +  VELD     +L  R +  P+ N +L +I+ D L+ +   YF+              N+PY IS+PL F L       +    M QKE   RL A P  K Y RL++  Q + +V
Sbjct:   16 KRFGQNFLHDMNVIHNIVSAINPKNGQFLLEIGPGLGALTEPVAEQVDKLTVVELDR----DLAERLRHHPFLNHKLTIIEQDALRFNFREYFESLELREGEGVRVFGNLPYNISTPLMFHLFKFHDLIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYYCQV 177          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_ACTP2 (Ribosomal RNA small subunit methyltransferase A OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=rsmA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.884e-13
Identity = 54/166 (32.53%), Postives = 80/166 (48.19%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSN-RLKVIQGDVLKTDL-PYFDIC----------VANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537
            K  GQ+ L +  ++ +IV     K+   +LEIGPG G LT+ + E    +  VELD     +L  R +  P+ N +L +I+ D L+ +   YF+              N+PY IS+PL F L       +    M QKE   RL A P  K Y RL++  Q + +V
Sbjct:   16 KRFGQNFLHDMNVIHNIVSAINPKNGQFLLEIGPGLGALTEPVAEQVDKLTVVELDR----DLAERLRHHPFLNHKLTIIEQDALRFNFREYFESLELREGEGVRVFGNLPYNISTPLMFHLFKFHDLIQDMHFMLQKEVVKRLCAAPNSKAYGRLTIMAQYYCQV 177          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_YERPY (Ribosomal RNA small subunit methyltransferase A OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=rsmA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.461e-13
Identity = 55/166 (33.13%), Postives = 77/166 (46.39%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQR----RFQSTPY-SNRLKVIQGDVLKTDLPYFDI-------CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537
            K  GQ+ L +  +++SIV        + ++EIGPG G LT+         +A  +D   V+EL R    R  S P   ++L + Q D +K +                N+PY IS+PL F L  +  A R    M QKE   RLVA P  K Y RL+V  Q +  V
Sbjct:   13 KRFGQNFLNDQFVIDSIVSAIHPVPGEAVVEIGPGLGALTEP--------VAARMDHMTVIELDRDLAARLASHPQLKDKLTIHQQDAMKVNFSELSEQAGQPLRVFGNLPYNISTPLMFHLFSYTDAIRDMHFMLQKEVVNRLVAGPNSKAYGRLTVMAQYYCNV 170          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_YERPS (Ribosomal RNA small subunit methyltransferase A OS=Yersinia pseudotuberculosis GN=rsmA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.461e-13
Identity = 55/166 (33.13%), Postives = 77/166 (46.39%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQR----RFQSTPY-SNRLKVIQGDVLKTDLPYFDI-------CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537
            K  GQ+ L +  +++SIV        + ++EIGPG G LT+         +A  +D   V+EL R    R  S P   ++L + Q D +K +                N+PY IS+PL F L  +  A R    M QKE   RLVA P  K Y RL+V  Q +  V
Sbjct:   13 KRFGQNFLNDQFVIDSIVSAIHPVPGEAVVEIGPGLGALTEP--------VAARMDHMTVIELDRDLAARLASHPQLKDKLTIHQQDAMKVNFSELSEQAGQPLRVFGNLPYNISTPLMFHLFSYTDAIRDMHFMLQKEVVNRLVAGPNSKAYGRLTVMAQYYCNV 170          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_YERPP (Ribosomal RNA small subunit methyltransferase A OS=Yersinia pestis (strain Pestoides F) GN=rsmA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.461e-13
Identity = 55/166 (33.13%), Postives = 77/166 (46.39%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQR----RFQSTPY-SNRLKVIQGDVLKTDLPYFDI-------CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537
            K  GQ+ L +  +++SIV        + ++EIGPG G LT+         +A  +D   V+EL R    R  S P   ++L + Q D +K +                N+PY IS+PL F L  +  A R    M QKE   RLVA P  K Y RL+V  Q +  V
Sbjct:   13 KRFGQNFLNDQFVIDSIVSAIHPVPGEAVVEIGPGLGALTEP--------VAARMDHMTVIELDRDLAARLASHPQLKDKLTIHQQDAMKVNFSELSEQAGQPLRVFGNLPYNISTPLMFHLFSYTDAIRDMHFMLQKEVVNRLVAGPNSKTYGRLTVMAQYYCNV 170          
The following BLAST results are available for this feature:
BLAST of DN617688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RSMA_MYCA51.884e-1334.59Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_COLP31.884e-1332.92Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_BURCJ1.884e-1337.04Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_ANASK1.884e-1331.40Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_ANAD21.884e-1331.40Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_ACTP71.884e-1332.53Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_ACTP21.884e-1332.53Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_YERPY2.461e-1333.13Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_YERPS2.461e-1333.13Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_YERPP2.461e-1333.13Ribosomal RNA small subunit methyltransferase A OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I22_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617688 ID=DN617688; Name=DN617688; organism=Citrus sinensis; type=EST; length=548bp
AGGAAGGAGAAAGGAAAGCAGAAAAGTGGACCGTATCAAGGACAAGGACT
AGGAGCAGGAGGTATATCCTTCCACAAATCAAAGGGGCAGCACATTCTGA
AGAACCCTTTGCTTGTGGAGAGCATCGTCCAAAAAGCCGGCATCAAGAGC
ACCGATGTCATTCTTGAGATTGGTCCCGGCACTGGTAATCTCACCAAAAA
GCTTCTGGAAGTTGGCAAGATGGTCATCGCTGTCGAGCTTGACTCTCGTA
TGGTTCTCGAGCTCCAGCGCCGTTTTCAATCCACCCCTTACTCCAACCGT
TTAAAGGTCATTCAGGGTGATGTCCTCAAGACTGATCTTCCCTATTTTGA
TATATGTGTGGCAAACATCCCGTACCAAATCTCCTCCCCACTCACATTCA
AGTTGTTGTTTCACCAACCTGCCTTCAGATGCGCGATTATTATGTTCCAG
AAAGAATTTGCTATGAGACTTGTTGCTCAACCCGGTGACAAGCTCTACTG
TCGTCTTTCTGTGAATACACAACTTCATGCTCGGGTCTCCCACCTCCT
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