DN617688
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_SHESA (Ribosomal RNA small subunit methyltransferase A OS=Shewanella sp. (strain ANA-3) GN=rsmA PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 2.461e-13 Identity = 53/160 (33.12%), Postives = 75/160 (46.88%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDI------CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537 K GQ+ L + ++ IV + V++EIGPG G LT+ + + VELD +V LQ ++L + QGD L+ D + N+PY IS+PL F L M QKE +RL A PG+K Y RL+V Q +V Sbjct: 13 KRFGQNFLTDDNVINRIVGAIVPDNDHVMVEIGPGLGALTEPVATAIDNLTVVELDRDLVERLQNH---PVLKDKLTIHQGDALQFDFSQLVVPGKKLKVFGNLPYNISTPLMFHLFEFAEQIETMHFMLQKEVVLRLSASPGNKAYGRLTVMAQYFCQV 169
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_PHOPR (Ribosomal RNA small subunit methyltransferase A OS=Photobacterium profundum GN=rsmA PE=3 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 2.461e-13 Identity = 52/162 (32.10%), Postives = 81/162 (50.00%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTP-YSNRLKVIQGDVLKTDL-----PYFDICV-ANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVS 540 K GQ+ L +P +++ IV ++EIGPG G LT+ + + +ELD +L +R + P +++L + +GD ++ D P + + N+PY IS+PL F L M QKE RL A PG K Y RL+V Q ++RV+ Sbjct: 14 KRFGQNFLNDPYIIDGIVSSINPLPGQNLVEIGPGLGALTEPVGRLVDKFSVIELDR----DLAKRLRHHPDLADKLTIYEGDAMRFDFTQLIKPNNKLRIFGNLPYNISTPLMFHLFTFHEHVEDMHFMLQKEVVNRLAAGPGCKAYGRLTVMAQYYSRVT 171
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_NEIMA (Ribosomal RNA small subunit methyltransferase A OS=Neisseria meningitidis serogroup A GN=rsmA PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 2.461e-13 Identity = 52/156 (33.33%), Postives = 82/156 (52.56%), Query Frame = 1 Query: 73 HKSK---GQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD---LPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQ 522 HK++ GQ+ L++ ++ IV ++ DV++EIGPG +T+ L + + VE+D +V R ++ P++++L + +GDVL+ D + V N+PY IS+PL FKL M QKE R+VA P Y RL V Q Sbjct: 4 HKARKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAKKLNRLHVVEIDRDIVC----RLKTLPFADKLVIHEGDVLQFDFNGIAGKKKIVGNLPYNISTPLLFKLAEVADDVVDMHFMLQKEVVDRMVAAPKSNDYGRLGVMLQ 155
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_NEIM0 (Ribosomal RNA small subunit methyltransferase A OS=Neisseria meningitidis serogroup C (strain 053442) GN=rsmA PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 2.461e-13 Identity = 52/156 (33.33%), Postives = 82/156 (52.56%), Query Frame = 1 Query: 73 HKSK---GQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD---LPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQ 522 HK++ GQ+ L++ ++ IV ++ DV++EIGPG +T+ L + + VE+D +V R ++ P++++L + +GDVL+ D + V N+PY IS+PL FKL M QKE R+VA P Y RL V Q Sbjct: 4 HKARKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAKKLNRLHVVEIDRDIVC----RLKTLPFADKLVIHEGDVLQFDFNGIAGKKKIVGNLPYNISTPLLFKLAEVADDVVDMHFMLQKEVVDRMVAAPKSNDYGRLGVMLQ 155
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_PARUW (Ribosomal RNA small subunit methyltransferase A OS=Protochlamydia amoebophila (strain UWE25) GN=rsmA PE=3 SV=2) HSP 1 Score: 74.7146 bits (182), Expect = 3.214e-13 Identity = 48/163 (29.45%), Postives = 88/163 (53.99%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL----------PYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHAR 534 K Q+ L + ++ IV+ + ++ +++LEIGPG G+LT+ +LEV V+AVE D + EL +RFQ TP S +L++ D+L + +AN+PY +++P+ +++ + F +M Q+E A R+ A PG Y ++ +++ Sbjct: 22 KGLSQNFLIDGNIIRKIVRASDVQPGNLVLEIGPGPGSLTQAMLEVEAHVVAVEKDFVLAREL-KRFQ-TP-SKQLEIFCEDILMFSVEEELQSRLRDDQKAKVIANLPYHLTTPILAEMVVRRKLFSSLTVMVQEEVARRMTALPGQSDYSSFTIFLNFYSK 181
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_ERWCT (Ribosomal RNA small subunit methyltransferase A OS=Erwinia carotovora subsp. atroseptica GN=rsmA PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 3.214e-13 Identity = 50/161 (31.06%), Postives = 75/161 (46.58%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDI-------CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537 K GQ+ L + +++SIV + ++EIGPG G LT + E +ELD + L++ ++L +IQ D + D N+PY IS+PL F L + + R M QKE RLVA P K + RLSV Q + ++ Sbjct: 13 KRFGQNFLNDHFVIDSIVSAIHPQPGQAVVEIGPGLGALTAPIGERMDRFTVIELDRDLAARLEKH---PTLKDKLTIIQQDAMTIDFAALAEQAGQPLRVFGNLPYNISTPLMFHLFTYTQSIRDMHFMLQKEVVNRLVAGPNSKTFGRLSVMAQYYCQI 170
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: TFB1M_BOVIN (Mitochondrial dimethyladenosine transferase 1 OS=Bos taurus GN=TFB1M PE=2 SV=2) HSP 1 Score: 74.3294 bits (181), Expect = 4.198e-13 Identity = 58/183 (31.69%), Postives = 86/183 (46.99%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVL----------------KTDLPYFDICVANIPYQISSPLTFKLL---------FHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546 K Q+ L + L + IV+KAG + + E+GPG G +T+ +L G ++ VE DSR + LQ + P +L+++ GDVL + D P I + N+P+ +S+PL K L F R ++ FQKE A RL A G K RLS+ Q V H+ Sbjct: 31 KQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGITRSILNAGVAELLVVEKDSRFIPGLQMLSDAAP--GKLRIVHGDVLTFKIERAFPESLKRQWEDDPPNVHI-IGNLPFSVSTPLIIKWLENVSQRNGPFAYGRTR-MMLTFQKEVAERLTATTGSKQRSRLSIMAQYLCDVQHI 209
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_YERE8 (Ribosomal RNA small subunit methyltransferase A OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=rsmA PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 4.198e-13 Identity = 55/166 (33.13%), Postives = 77/166 (46.39%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQR----RFQSTPY-SNRLKVIQGDVLKTDLPYFDICVA-------NIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537 K GQ+ L + +++SIV + ++EIGPG G LT+ +A +D V+EL R R S P ++L + Q D +K + N+PY IS+PL F L + A R M QKE RLVA P K Y RL+V Q + V Sbjct: 13 KRFGQNFLNDQFVIDSIVSAIHPVPGEAVVEIGPGLGALTEP--------VAARMDHMTVIELDRDLADRLASHPQLKDKLTIHQEDAMKINFSELAELAGQPLRVFGNLPYNISTPLMFHLFSYTSAIRDMHFMLQKEVVNRLVAGPNSKAYGRLTVMAQYYCNV 170
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_THETN (Ribosomal RNA small subunit methyltransferase A OS=Thermoanaerobacter tengcongensis GN=rsmA PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 4.198e-13 Identity = 52/162 (32.10%), Postives = 86/162 (53.09%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL-----PYFD----ICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHAR 534 K GQ+ + + L+ IV+ +G+ D +LE+G G G LT++L + K V++ E+D + E+ R + + +I D+L+ DL +FD VAN+PY I+SP+ K+L + +++ QKE A R+ A PG K Y L+V A+ Sbjct: 5 KKWGQNFIFDKNLLSKIVRASGVGEEDFVLEVGTGHGGLTEELAKKVKKVVSFEIDKEL-FEMSR--EKLKIYKNVVIINEDILEVDLLEIAQEHFDGNSFKVVANLPYYITSPIIMKMLDCKLVKEMTVLV-QKEVAERICALPGTKDYGMLTVFVNFKAK 162
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_SHEDO (Ribosomal RNA small subunit methyltransferase A OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=rsmA PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 4.198e-13 Identity = 54/165 (32.73%), Postives = 78/165 (47.27%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQR----RFQSTP-YSNRLKVIQGDVLKTDLPYFDIC------VANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537 K GQ+ L + ++ IV + V++EIGPG G +T+ +A+ +D V+EL R R Q+ P ++L + QGD L+ D N+PY IS+PL F L M QKE +RL A PG K Y RL+V Q + +V Sbjct: 13 KRFGQNFLTDDSIISRIVGAISPDNDHVMVEIGPGLGAITEP--------VAMSIDKLSVVELDRDLVERLQNHPTLKDKLDIHQGDALQFDFSTLQQAGKKMKVFGNLPYNISTPLMFHLFEFAEIIETMHFMLQKEVVLRLSASPGCKAYGRLTVMAQYYCQV 169 The following BLAST results are available for this feature:
BLAST of DN617688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DN617688 ID=DN617688; Name=DN617688; organism=Citrus sinensis; type=EST; length=548bpback to top |