DN617688

Overview
NameDN617688
Unique NameDN617688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length548
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_SHESA (Ribosomal RNA small subunit methyltransferase A OS=Shewanella sp. (strain ANA-3) GN=rsmA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.461e-13
Identity = 53/160 (33.12%), Postives = 75/160 (46.88%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDI------CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537
            K  GQ+ L +  ++  IV      +  V++EIGPG G LT+ +      +  VELD  +V  LQ         ++L + QGD L+ D     +         N+PY IS+PL F L            M QKE  +RL A PG+K Y RL+V  Q   +V
Sbjct:   13 KRFGQNFLTDDNVINRIVGAIVPDNDHVMVEIGPGLGALTEPVATAIDNLTVVELDRDLVERLQNH---PVLKDKLTIHQGDALQFDFSQLVVPGKKLKVFGNLPYNISTPLMFHLFEFAEQIETMHFMLQKEVVLRLSASPGNKAYGRLTVMAQYFCQV 169          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_PHOPR (Ribosomal RNA small subunit methyltransferase A OS=Photobacterium profundum GN=rsmA PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.461e-13
Identity = 52/162 (32.10%), Postives = 81/162 (50.00%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTP-YSNRLKVIQGDVLKTDL-----PYFDICV-ANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVS 540
            K  GQ+ L +P +++ IV          ++EIGPG G LT+ +  +      +ELD     +L +R +  P  +++L + +GD ++ D      P   + +  N+PY IS+PL F L            M QKE   RL A PG K Y RL+V  Q ++RV+
Sbjct:   14 KRFGQNFLNDPYIIDGIVSSINPLPGQNLVEIGPGLGALTEPVGRLVDKFSVIELDR----DLAKRLRHHPDLADKLTIYEGDAMRFDFTQLIKPNNKLRIFGNLPYNISTPLMFHLFTFHEHVEDMHFMLQKEVVNRLAAGPGCKAYGRLTVMAQYYSRVT 171          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_NEIMA (Ribosomal RNA small subunit methyltransferase A OS=Neisseria meningitidis serogroup A GN=rsmA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.461e-13
Identity = 52/156 (33.33%), Postives = 82/156 (52.56%), Query Frame = 1
Query:   73 HKSK---GQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD---LPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQ 522
            HK++   GQ+ L++  ++  IV     ++ DV++EIGPG   +T+ L +    +  VE+D  +V     R ++ P++++L + +GDVL+ D   +      V N+PY IS+PL FKL            M QKE   R+VA P    Y RL V  Q
Sbjct:    4 HKARKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAKKLNRLHVVEIDRDIVC----RLKTLPFADKLVIHEGDVLQFDFNGIAGKKKIVGNLPYNISTPLLFKLAEVADDVVDMHFMLQKEVVDRMVAAPKSNDYGRLGVMLQ 155          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_NEIM0 (Ribosomal RNA small subunit methyltransferase A OS=Neisseria meningitidis serogroup C (strain 053442) GN=rsmA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.461e-13
Identity = 52/156 (33.33%), Postives = 82/156 (52.56%), Query Frame = 1
Query:   73 HKSK---GQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD---LPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQ 522
            HK++   GQ+ L++  ++  IV     ++ DV++EIGPG   +T+ L +    +  VE+D  +V     R ++ P++++L + +GDVL+ D   +      V N+PY IS+PL FKL            M QKE   R+VA P    Y RL V  Q
Sbjct:    4 HKARKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAKKLNRLHVVEIDRDIVC----RLKTLPFADKLVIHEGDVLQFDFNGIAGKKKIVGNLPYNISTPLLFKLAEVADDVVDMHFMLQKEVVDRMVAAPKSNDYGRLGVMLQ 155          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_PARUW (Ribosomal RNA small subunit methyltransferase A OS=Protochlamydia amoebophila (strain UWE25) GN=rsmA PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 3.214e-13
Identity = 48/163 (29.45%), Postives = 88/163 (53.99%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL----------PYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHAR 534
            K   Q+ L +  ++  IV+ + ++  +++LEIGPG G+LT+ +LEV   V+AVE D  +  EL +RFQ TP S +L++   D+L   +                +AN+PY +++P+  +++  +  F    +M Q+E A R+ A PG   Y   ++    +++
Sbjct:   22 KGLSQNFLIDGNIIRKIVRASDVQPGNLVLEIGPGPGSLTQAMLEVEAHVVAVEKDFVLAREL-KRFQ-TP-SKQLEIFCEDILMFSVEEELQSRLRDDQKAKVIANLPYHLTTPILAEMVVRRKLFSSLTVMVQEEVARRMTALPGQSDYSSFTIFLNFYSK 181          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_ERWCT (Ribosomal RNA small subunit methyltransferase A OS=Erwinia carotovora subsp. atroseptica GN=rsmA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.214e-13
Identity = 50/161 (31.06%), Postives = 75/161 (46.58%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDI-------CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537
            K  GQ+ L +  +++SIV     +    ++EIGPG G LT  + E       +ELD  +   L++        ++L +IQ D +  D                N+PY IS+PL F L  +  + R    M QKE   RLVA P  K + RLSV  Q + ++
Sbjct:   13 KRFGQNFLNDHFVIDSIVSAIHPQPGQAVVEIGPGLGALTAPIGERMDRFTVIELDRDLAARLEKH---PTLKDKLTIIQQDAMTIDFAALAEQAGQPLRVFGNLPYNISTPLMFHLFTYTQSIRDMHFMLQKEVVNRLVAGPNSKTFGRLSVMAQYYCQI 170          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: TFB1M_BOVIN (Mitochondrial dimethyladenosine transferase 1 OS=Bos taurus GN=TFB1M PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 4.198e-13
Identity = 58/183 (31.69%), Postives = 86/183 (46.99%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVL----------------KTDLPYFDICVANIPYQISSPLTFKLL---------FHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546
            K   Q+ L +  L + IV+KAG  +   + E+GPG G +T+ +L  G   ++ VE DSR +  LQ    + P   +L+++ GDVL                + D P   I + N+P+ +S+PL  K L         F     R  ++ FQKE A RL A  G K   RLS+  Q    V H+
Sbjct:   31 KQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGITRSILNAGVAELLVVEKDSRFIPGLQMLSDAAP--GKLRIVHGDVLTFKIERAFPESLKRQWEDDPPNVHI-IGNLPFSVSTPLIIKWLENVSQRNGPFAYGRTR-MMLTFQKEVAERLTATTGSKQRSRLSIMAQYLCDVQHI 209          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_YERE8 (Ribosomal RNA small subunit methyltransferase A OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=rsmA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.198e-13
Identity = 55/166 (33.13%), Postives = 77/166 (46.39%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQR----RFQSTPY-SNRLKVIQGDVLKTDLPYFDICVA-------NIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537
            K  GQ+ L +  +++SIV        + ++EIGPG G LT+         +A  +D   V+EL R    R  S P   ++L + Q D +K +                N+PY IS+PL F L  +  A R    M QKE   RLVA P  K Y RL+V  Q +  V
Sbjct:   13 KRFGQNFLNDQFVIDSIVSAIHPVPGEAVVEIGPGLGALTEP--------VAARMDHMTVIELDRDLADRLASHPQLKDKLTIHQEDAMKINFSELAELAGQPLRVFGNLPYNISTPLMFHLFSYTSAIRDMHFMLQKEVVNRLVAGPNSKAYGRLTVMAQYYCNV 170          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_THETN (Ribosomal RNA small subunit methyltransferase A OS=Thermoanaerobacter tengcongensis GN=rsmA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.198e-13
Identity = 52/162 (32.10%), Postives = 86/162 (53.09%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL-----PYFD----ICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHAR 534
            K  GQ+ + +  L+  IV+ +G+   D +LE+G G G LT++L +  K V++ E+D  +  E+ R  +       + +I  D+L+ DL      +FD      VAN+PY I+SP+  K+L  +      +++ QKE A R+ A PG K Y  L+V     A+
Sbjct:    5 KKWGQNFIFDKNLLSKIVRASGVGEEDFVLEVGTGHGGLTEELAKKVKKVVSFEIDKEL-FEMSR--EKLKIYKNVVIINEDILEVDLLEIAQEHFDGNSFKVVANLPYYITSPIIMKMLDCKLVKEMTVLV-QKEVAERICALPGTKDYGMLTVFVNFKAK 162          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_SHEDO (Ribosomal RNA small subunit methyltransferase A OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=rsmA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.198e-13
Identity = 54/165 (32.73%), Postives = 78/165 (47.27%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQR----RFQSTP-YSNRLKVIQGDVLKTDLPYFDIC------VANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537
            K  GQ+ L +  ++  IV      +  V++EIGPG G +T+         +A+ +D   V+EL R    R Q+ P   ++L + QGD L+ D               N+PY IS+PL F L            M QKE  +RL A PG K Y RL+V  Q + +V
Sbjct:   13 KRFGQNFLTDDSIISRIVGAISPDNDHVMVEIGPGLGAITEP--------VAMSIDKLSVVELDRDLVERLQNHPTLKDKLDIHQGDALQFDFSTLQQAGKKMKVFGNLPYNISTPLMFHLFEFAEIIETMHFMLQKEVVLRLSASPGCKAYGRLTVMAQYYCQV 169          
The following BLAST results are available for this feature:
BLAST of DN617688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RSMA_SHESA2.461e-1333.13Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_PHOPR2.461e-1332.10Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_NEIMA2.461e-1333.33Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_NEIM02.461e-1333.33Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_PARUW3.214e-1329.45Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_ERWCT3.214e-1331.06Ribosomal RNA small subunit methyltransferase A OS... [more]
TFB1M_BOVIN4.198e-1331.69Mitochondrial dimethyladenosine transferase 1 OS=B... [more]
RSMA_YERE84.198e-1333.13Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_THETN4.198e-1332.10Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_SHEDO4.198e-1332.73Ribosomal RNA small subunit methyltransferase A OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I22_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617688 ID=DN617688; Name=DN617688; organism=Citrus sinensis; type=EST; length=548bp
AGGAAGGAGAAAGGAAAGCAGAAAAGTGGACCGTATCAAGGACAAGGACT
AGGAGCAGGAGGTATATCCTTCCACAAATCAAAGGGGCAGCACATTCTGA
AGAACCCTTTGCTTGTGGAGAGCATCGTCCAAAAAGCCGGCATCAAGAGC
ACCGATGTCATTCTTGAGATTGGTCCCGGCACTGGTAATCTCACCAAAAA
GCTTCTGGAAGTTGGCAAGATGGTCATCGCTGTCGAGCTTGACTCTCGTA
TGGTTCTCGAGCTCCAGCGCCGTTTTCAATCCACCCCTTACTCCAACCGT
TTAAAGGTCATTCAGGGTGATGTCCTCAAGACTGATCTTCCCTATTTTGA
TATATGTGTGGCAAACATCCCGTACCAAATCTCCTCCCCACTCACATTCA
AGTTGTTGTTTCACCAACCTGCCTTCAGATGCGCGATTATTATGTTCCAG
AAAGAATTTGCTATGAGACTTGTTGCTCAACCCGGTGACAAGCTCTACTG
TCGTCTTTCTGTGAATACACAACTTCATGCTCGGGTCTCCCACCTCCT
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