DN617688
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_BACWK (Ribosomal RNA small subunit methyltransferase A OS=Bacillus weihenstephanensis (strain KBAB4) GN=rsmA PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 1.591e-20 Identity = 67/167 (40.12%), Postives = 93/167 (55.69%), Query Frame = 1 Query: 67 SFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL-----PYFD-----ICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537 SF KS GQ+ L + ++ IV A I S +EIGPG G LT++L + K V+A E+D R++ L PYSN + VI DVLK D+ F+ + VAN+PY I++P+ FKLL + R ++M QKE RL A+PG K Y LS+ Q + V Sbjct: 20 SFKKSLGQNFLIDTNVLNRIVDHAEIGSESGAIEIGPGIGALTEQLAKRAKKVVAFEIDQRLLPILDETL--APYSN-VTVINKDVLKADVHEVFSEQFEEGQDVMVVANLPYYITTPILFKLLEEKLPVRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEV 183
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_DESOH (Ribosomal RNA small subunit methyltransferase A OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=rsmA PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 2.079e-20 Identity = 59/164 (35.98%), Postives = 92/164 (56.10%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDIC---------VANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVS 540 KS GQ+ L +P E IV+K G+ DV++E+GPGTG LT V A+E D R++ L+ ++ N + V+ D++KTD+ +IC + N+PY ISS + L+ + A A++MFQ+E A R+ A PG++ Y R+SV + A +S Sbjct: 17 KSLGQNFLCDPQAAEMIVRKCGLSKADVVVEVGPGTGALTIPAAGQAAWVYAIETDGRLIEPLKETVRAAGLDN-VTVLHRDIMKTDIR--EICREAGRKLVVLGNLPYYISSQILMDLVEKREAVDRAVLMFQQELARRIAAPPGNREYGRISVALRYCAELS 177
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_BACSK (Ribosomal RNA small subunit methyltransferase A OS=Bacillus clausii (strain KSM-K16) GN=rsmA PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 2.079e-20 Identity = 60/162 (37.04%), Postives = 90/162 (55.56%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP-YFDI---------CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHA 531 KS GQ+ L + ++ IV+ +G D I+EIGPG G LT++L + V+A E+D R++ L+ + P +K+I DVLK DLP D VAN+PY +++P+ KLL + F+ +M Q E A R+ A+PG K Y LS+ Q +A Sbjct: 26 KSLGQNFLIDLNILAKIVEASGFDEQDGIVEIGPGIGALTEQLAKKADKVVAFEIDGRLIPVLEDTLSAYP---NVKIIHSDVLKADLPGVLDAEFSKGQAIHVVANLPYYVTTPILMKLLEDRLPFKSITVMIQAEVAERIAAKPGSKEYGALSIAAQYYA 184
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_HALOH (Ribosomal RNA small subunit methyltransferase A OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=rsmA PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 2.715e-20 Identity = 62/168 (36.90%), Postives = 90/168 (53.57%), Query Frame = 1 Query: 64 ISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYF-------DICV---ANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537 + HK GQ+ L + +V+ I+ A + + D+++EIGPG G+LT+K++ V A E D R+V L+ F N L+VI DVL+ D +F D V AN+PY I++P+ LL F ++M QKE A R+ A PG K Y LSV Q + V Sbjct: 20 LKLHKGLGQNFLIDQNIVDKIINTADLNNEDIVIEIGPGIGSLTQKIVPRSGRVFAFEKDKRLVKVLRELFNG---YNHLEVIGQDVLEVDWKHFFDSRGISDRSVKVLANLPYYITTPVIMGLLESNITFSLMVLMVQKEVADRMAAAPGSKDYGALSVAVQYYGEV 184
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_PSEPK (Ribosomal RNA small subunit methyltransferase A OS=Pseudomonas putida (strain KT2440) GN=rsmA PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 3.545e-20 Identity = 62/163 (38.04%), Postives = 85/163 (52.15%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDI------CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546 K GQ+ L + +++ I++ K+ + +LEIGPG G LT+ LL G + VELD +V LQ +F + ++ QGD LK D + V N+PY IS+PL F LL H R M QKE R+ A PG + RLS+ Q H RV HL Sbjct: 11 KRFGQNFLHDAGIIDRILRAINAKAGEHLLEIGPGQGALTEGLLGSGAQLDVVELDKDLVPILQHKFADR---SNFRLHQGDALKFDFNQLGVPPRSLKVVGNLPYNISTPLIFHLLSHAGLIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHL 170
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_THEP1 (Ribosomal RNA small subunit methyltransferase A OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rsmA PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 4.630e-20 Identity = 60/162 (37.04%), Postives = 90/162 (55.56%), Query Frame = 1 Query: 64 ISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKT-DLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546 + K GQ L + + + IV++ G+ DV++EIG G G LT++L + G VIA E+D + L+ R P +++ D LK D+P ICV+NIPY I+ P+ K++ + F+ AI+M QKE R++A+PG K Y LSV Q V L Sbjct: 12 VKLKKHLGQVFLSDDRIAKRIVKEVGLTPEDVVVEIGAGAGTLTEELAKTGARVIAYEIDESLAPVLRERLSKYP---NVELRFEDFLKAKDIPEGAICVSNIPYSITGPIMEKII--EWKFKRAIVMVQKEVGERILAKPGKKTYGYLSVVVQTFYEVKKL 168
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_BACHK (Ribosomal RNA small subunit methyltransferase A OS=Bacillus thuringiensis subsp. konkukian GN=rsmA PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 4.630e-20 Identity = 66/167 (39.52%), Postives = 92/167 (55.09%), Query Frame = 1 Query: 67 SFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL-----PYFD-----ICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537 SF KS GQ+ L + ++ IV A I S +EIGPG G LT++L + K V+A E+D R++ L PY N + VI DVLK D+ F+ + VAN+PY I++P+ FKLL + R ++M QKE RL A+PG K Y LS+ Q + V Sbjct: 20 SFKKSLGQNFLIDTNVLNRIVDHAEIGSESGAIEIGPGIGALTEQLAKRAKKVVAFEIDQRLLPILDETL--APYGN-VTVINKDVLKADVHEVFSEQFEEGQDVMVVANLPYYITTPILFKLLEEKLPVRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEV 183
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_BACCZ (Ribosomal RNA small subunit methyltransferase A OS=Bacillus cereus (strain ZK / E33L) GN=rsmA PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 4.630e-20 Identity = 66/167 (39.52%), Postives = 92/167 (55.09%), Query Frame = 1 Query: 67 SFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL-----PYFD-----ICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537 SF KS GQ+ L + ++ IV A I S +EIGPG G LT++L + K V+A E+D R++ L PY N + VI DVLK D+ F+ + VAN+PY I++P+ FKLL + R ++M QKE RL A+PG K Y LS+ Q + V Sbjct: 20 SFKKSLGQNFLIDTNVLNRIVDHAEIGSESGAIEIGPGIGALTEQLAKRAKKVVAFEIDQRLLPILDETL--APYGN-VTVINKDVLKADVHEVFSEQFEEGQDVMVVANLPYYITTPILFKLLEEKLPVRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEV 183
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_BACCR (Ribosomal RNA small subunit methyltransferase A OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rsmA PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 4.630e-20 Identity = 66/167 (39.52%), Postives = 92/167 (55.09%), Query Frame = 1 Query: 67 SFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL-----PYFD-----ICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537 SF KS GQ+ L + ++ IV A I S +EIGPG G LT++L + K V+A E+D R++ L PY N + VI DVLK D+ F+ + VAN+PY I++P+ FKLL + R ++M QKE RL A+PG K Y LS+ Q + V Sbjct: 20 SFKKSLGQNFLIDTNVLNRIVDHAEIGSESGAIEIGPGIGALTEQLAKRAKKVVAFEIDQRLLPILDETL--APYGN-VTVINKDVLKADVHEVFNEQFEEGQDVMVVANLPYYITTPILFKLLEEKLPVRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEV 183
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_BACCQ (Ribosomal RNA small subunit methyltransferase A OS=Bacillus cereus (strain Q1) GN=rsmA PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 4.630e-20 Identity = 66/167 (39.52%), Postives = 92/167 (55.09%), Query Frame = 1 Query: 67 SFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL-----PYFD-----ICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537 SF KS GQ+ L + ++ IV A I S +EIGPG G LT++L + K V+A E+D R++ L PY N + VI DVLK D+ F+ + VAN+PY I++P+ FKLL + R ++M QKE RL A+PG K Y LS+ Q + V Sbjct: 20 SFKKSLGQNFLIDTNVLNRIVDHAEIGSESGAIEIGPGIGALTEQLAKRAKKVVAFEIDQRLLPILDETL--APYGN-VTVINKDVLKADVHEVFSEQFEEGQDVMVVANLPYYITTPILFKLLEEKLPVRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEV 183 The following BLAST results are available for this feature:
BLAST of DN617688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DN617688 ID=DN617688; Name=DN617688; organism=Citrus sinensis; type=EST; length=548bpback to top |