DN617688

Overview
NameDN617688
Unique NameDN617688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length548
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_BACWK (Ribosomal RNA small subunit methyltransferase A OS=Bacillus weihenstephanensis (strain KBAB4) GN=rsmA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.591e-20
Identity = 67/167 (40.12%), Postives = 93/167 (55.69%), Query Frame = 1
Query:   67 SFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL-----PYFD-----ICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537
            SF KS GQ+ L +  ++  IV  A I S    +EIGPG G LT++L +  K V+A E+D R++  L       PYSN + VI  DVLK D+       F+     + VAN+PY I++P+ FKLL  +   R  ++M QKE   RL A+PG K Y  LS+  Q +  V
Sbjct:   20 SFKKSLGQNFLIDTNVLNRIVDHAEIGSESGAIEIGPGIGALTEQLAKRAKKVVAFEIDQRLLPILDETL--APYSN-VTVINKDVLKADVHEVFSEQFEEGQDVMVVANLPYYITTPILFKLLEEKLPVRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEV 183          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_DESOH (Ribosomal RNA small subunit methyltransferase A OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=rsmA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.079e-20
Identity = 59/164 (35.98%), Postives = 92/164 (56.10%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDIC---------VANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVS 540
            KS GQ+ L +P   E IV+K G+   DV++E+GPGTG LT         V A+E D R++  L+   ++    N + V+  D++KTD+   +IC         + N+PY ISS +   L+  + A   A++MFQ+E A R+ A PG++ Y R+SV  +  A +S
Sbjct:   17 KSLGQNFLCDPQAAEMIVRKCGLSKADVVVEVGPGTGALTIPAAGQAAWVYAIETDGRLIEPLKETVRAAGLDN-VTVLHRDIMKTDIR--EICREAGRKLVVLGNLPYYISSQILMDLVEKREAVDRAVLMFQQELARRIAAPPGNREYGRISVALRYCAELS 177          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_BACSK (Ribosomal RNA small subunit methyltransferase A OS=Bacillus clausii (strain KSM-K16) GN=rsmA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.079e-20
Identity = 60/162 (37.04%), Postives = 90/162 (55.56%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP-YFDI---------CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHA 531
            KS GQ+ L +  ++  IV+ +G    D I+EIGPG G LT++L +    V+A E+D R++  L+    + P    +K+I  DVLK DLP   D           VAN+PY +++P+  KLL  +  F+   +M Q E A R+ A+PG K Y  LS+  Q +A
Sbjct:   26 KSLGQNFLIDLNILAKIVEASGFDEQDGIVEIGPGIGALTEQLAKKADKVVAFEIDGRLIPVLEDTLSAYP---NVKIIHSDVLKADLPGVLDAEFSKGQAIHVVANLPYYVTTPILMKLLEDRLPFKSITVMIQAEVAERIAAKPGSKEYGALSIAAQYYA 184          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_HALOH (Ribosomal RNA small subunit methyltransferase A OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=rsmA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.715e-20
Identity = 62/168 (36.90%), Postives = 90/168 (53.57%), Query Frame = 1
Query:   64 ISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYF-------DICV---ANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537
            +  HK  GQ+ L +  +V+ I+  A + + D+++EIGPG G+LT+K++     V A E D R+V  L+  F      N L+VI  DVL+ D  +F       D  V   AN+PY I++P+   LL     F   ++M QKE A R+ A PG K Y  LSV  Q +  V
Sbjct:   20 LKLHKGLGQNFLIDQNIVDKIINTADLNNEDIVIEIGPGIGSLTQKIVPRSGRVFAFEKDKRLVKVLRELFNG---YNHLEVIGQDVLEVDWKHFFDSRGISDRSVKVLANLPYYITTPVIMGLLESNITFSLMVLMVQKEVADRMAAAPGSKDYGALSVAVQYYGEV 184          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_PSEPK (Ribosomal RNA small subunit methyltransferase A OS=Pseudomonas putida (strain KT2440) GN=rsmA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.545e-20
Identity = 62/163 (38.04%), Postives = 85/163 (52.15%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDI------CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546
            K  GQ+ L +  +++ I++    K+ + +LEIGPG G LT+ LL  G  +  VELD  +V  LQ +F      +  ++ QGD LK D     +       V N+PY IS+PL F LL H    R    M QKE   R+ A PG   + RLS+  Q H RV HL
Sbjct:   11 KRFGQNFLHDAGIIDRILRAINAKAGEHLLEIGPGQGALTEGLLGSGAQLDVVELDKDLVPILQHKFADR---SNFRLHQGDALKFDFNQLGVPPRSLKVVGNLPYNISTPLIFHLLSHAGLIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHL 170          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_THEP1 (Ribosomal RNA small subunit methyltransferase A OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rsmA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.630e-20
Identity = 60/162 (37.04%), Postives = 90/162 (55.56%), Query Frame = 1
Query:   64 ISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKT-DLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546
            +   K  GQ  L +  + + IV++ G+   DV++EIG G G LT++L + G  VIA E+D  +   L+ R    P    +++   D LK  D+P   ICV+NIPY I+ P+  K++  +  F+ AI+M QKE   R++A+PG K Y  LSV  Q    V  L
Sbjct:   12 VKLKKHLGQVFLSDDRIAKRIVKEVGLTPEDVVVEIGAGAGTLTEELAKTGARVIAYEIDESLAPVLRERLSKYP---NVELRFEDFLKAKDIPEGAICVSNIPYSITGPIMEKII--EWKFKRAIVMVQKEVGERILAKPGKKTYGYLSVVVQTFYEVKKL 168          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_BACHK (Ribosomal RNA small subunit methyltransferase A OS=Bacillus thuringiensis subsp. konkukian GN=rsmA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.630e-20
Identity = 66/167 (39.52%), Postives = 92/167 (55.09%), Query Frame = 1
Query:   67 SFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL-----PYFD-----ICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537
            SF KS GQ+ L +  ++  IV  A I S    +EIGPG G LT++L +  K V+A E+D R++  L       PY N + VI  DVLK D+       F+     + VAN+PY I++P+ FKLL  +   R  ++M QKE   RL A+PG K Y  LS+  Q +  V
Sbjct:   20 SFKKSLGQNFLIDTNVLNRIVDHAEIGSESGAIEIGPGIGALTEQLAKRAKKVVAFEIDQRLLPILDETL--APYGN-VTVINKDVLKADVHEVFSEQFEEGQDVMVVANLPYYITTPILFKLLEEKLPVRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEV 183          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_BACCZ (Ribosomal RNA small subunit methyltransferase A OS=Bacillus cereus (strain ZK / E33L) GN=rsmA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.630e-20
Identity = 66/167 (39.52%), Postives = 92/167 (55.09%), Query Frame = 1
Query:   67 SFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL-----PYFD-----ICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537
            SF KS GQ+ L +  ++  IV  A I S    +EIGPG G LT++L +  K V+A E+D R++  L       PY N + VI  DVLK D+       F+     + VAN+PY I++P+ FKLL  +   R  ++M QKE   RL A+PG K Y  LS+  Q +  V
Sbjct:   20 SFKKSLGQNFLIDTNVLNRIVDHAEIGSESGAIEIGPGIGALTEQLAKRAKKVVAFEIDQRLLPILDETL--APYGN-VTVINKDVLKADVHEVFSEQFEEGQDVMVVANLPYYITTPILFKLLEEKLPVRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEV 183          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_BACCR (Ribosomal RNA small subunit methyltransferase A OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rsmA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.630e-20
Identity = 66/167 (39.52%), Postives = 92/167 (55.09%), Query Frame = 1
Query:   67 SFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL-----PYFD-----ICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537
            SF KS GQ+ L +  ++  IV  A I S    +EIGPG G LT++L +  K V+A E+D R++  L       PY N + VI  DVLK D+       F+     + VAN+PY I++P+ FKLL  +   R  ++M QKE   RL A+PG K Y  LS+  Q +  V
Sbjct:   20 SFKKSLGQNFLIDTNVLNRIVDHAEIGSESGAIEIGPGIGALTEQLAKRAKKVVAFEIDQRLLPILDETL--APYGN-VTVINKDVLKADVHEVFNEQFEEGQDVMVVANLPYYITTPILFKLLEEKLPVRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEV 183          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_BACCQ (Ribosomal RNA small subunit methyltransferase A OS=Bacillus cereus (strain Q1) GN=rsmA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.630e-20
Identity = 66/167 (39.52%), Postives = 92/167 (55.09%), Query Frame = 1
Query:   67 SFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL-----PYFD-----ICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537
            SF KS GQ+ L +  ++  IV  A I S    +EIGPG G LT++L +  K V+A E+D R++  L       PY N + VI  DVLK D+       F+     + VAN+PY I++P+ FKLL  +   R  ++M QKE   RL A+PG K Y  LS+  Q +  V
Sbjct:   20 SFKKSLGQNFLIDTNVLNRIVDHAEIGSESGAIEIGPGIGALTEQLAKRAKKVVAFEIDQRLLPILDETL--APYGN-VTVINKDVLKADVHEVFSEQFEEGQDVMVVANLPYYITTPILFKLLEEKLPVRGFVVMMQKEVGDRLAAKPGTKEYGSLSIAIQYYTEV 183          
The following BLAST results are available for this feature:
BLAST of DN617688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RSMA_BACWK1.591e-2040.12Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_DESOH2.079e-2035.98Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_BACSK2.079e-2037.04Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_HALOH2.715e-2036.90Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_PSEPK3.545e-2038.04Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_THEP14.630e-2037.04Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_BACHK4.630e-2039.52Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_BACCZ4.630e-2039.52Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_BACCR4.630e-2039.52Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_BACCQ4.630e-2039.52Ribosomal RNA small subunit methyltransferase A OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I22_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617688 ID=DN617688; Name=DN617688; organism=Citrus sinensis; type=EST; length=548bp
AGGAAGGAGAAAGGAAAGCAGAAAAGTGGACCGTATCAAGGACAAGGACT
AGGAGCAGGAGGTATATCCTTCCACAAATCAAAGGGGCAGCACATTCTGA
AGAACCCTTTGCTTGTGGAGAGCATCGTCCAAAAAGCCGGCATCAAGAGC
ACCGATGTCATTCTTGAGATTGGTCCCGGCACTGGTAATCTCACCAAAAA
GCTTCTGGAAGTTGGCAAGATGGTCATCGCTGTCGAGCTTGACTCTCGTA
TGGTTCTCGAGCTCCAGCGCCGTTTTCAATCCACCCCTTACTCCAACCGT
TTAAAGGTCATTCAGGGTGATGTCCTCAAGACTGATCTTCCCTATTTTGA
TATATGTGTGGCAAACATCCCGTACCAAATCTCCTCCCCACTCACATTCA
AGTTGTTGTTTCACCAACCTGCCTTCAGATGCGCGATTATTATGTTCCAG
AAAGAATTTGCTATGAGACTTGTTGCTCAACCCGGTGACAAGCTCTACTG
TCGTCTTTCTGTGAATACACAACTTCATGCTCGGGTCTCCCACCTCCT
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