DN617688
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_SYNJB (Ribosomal RNA small subunit methyltransferase A OS=Synechococcus sp. GN=rsmA PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 6.048e-20 Identity = 64/160 (40.00%), Postives = 92/160 (57.50%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDV------ILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL-PYFDICVANIPYQISSPLTFKLLFH--QPA--FRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQ 522 K GQH LK+P + E+I++ A + + +LEIGPGTG LT++LL G V+AVE+D + L++RF P R +++GD L+ L P + VANIPY ++ + K+L QP F +++ QKE A RL A PG K Y LS+ TQ Sbjct: 6 KRFGQHWLKDPAVHEAILRAAQLNDLERGADPTWVLEIGPGTGQLTRRLLAQGVQVVAVEIDRDLCRLLRKRFADQP---RFHLVEGDFLRLPLPPQPRLLVANIPYNLTGSILEKVLGSPAQPVRQFERIVLLVQKELAERLQAGPGSKAYGALSLRTQ 162
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_MYCMO (Ribosomal RNA small subunit methyltransferase A OS=Mycoplasma mobile GN=rsmA PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 6.048e-20 Identity = 58/159 (36.48%), Postives = 98/159 (61.64%), Query Frame = 1 Query: 67 SFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFD--ICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537 +F KS GQ+ L++ ++E IV +++ DV LEIGPG G LT L++ K V+A E+D ++ L+ + ++ ++ + + D LK+++ + D I +ANIPY I+S + FK+ + F A+IM QKE A +L+A+ D Y +LSV++Q A + Sbjct: 4 NFKKSLGQNFLQDKNIIEKIVNFIPLENEDV-LEIGPGQGALTNLLVKKSKNVLAYEIDKELIPFLKEKIKAKNFTLKHE----DFLKSEIDFQDKKIIIANIPYFITSDILFKIFENHKFFTKALIMVQKEIADKLIAKANDSNYGKLSVSSQFFANI 157
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_MACCJ (Ribosomal RNA small subunit methyltransferase A OS=Macrococcus caseolyticus (strain JCSC5402) GN=rsmA PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 6.048e-20 Identity = 61/169 (36.09%), Postives = 91/169 (53.85%), Query Frame = 1 Query: 70 FHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL-----PYFDIC-----VANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546 F KS GQ+ L + ++ +I++ AGI T ++EIGPG G+LT++L + K V+A E+D R++ L +PY N + VI D+LK D+ Y C VAN+PY I++P+ LL ++M QKE RL A P K Y LS+ Q + V + Sbjct: 23 FKKSLGQNFLVDTNVIRNIIEAAGIDKTSGVIEIGPGMGSLTEQLAKHAKQVLAFEIDQRLIPILGETL--SPYDN-VTVINEDILKADVASAIETYLHHCDEIFVVANLPYYITTPILMGLLEKNLNINSYVVMMQKEVGERLSAIPSTKAYGSLSIAVQYYTDVKRI 188
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_ACIC5 (Ribosomal RNA small subunit methyltransferase A OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) GN=rsmA PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 6.048e-20 Identity = 61/165 (36.97%), Postives = 88/165 (53.33%), Query Frame = 1 Query: 73 HKSK-GQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFD------ICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546 HK K GQ+ L + SIV+ G ++EIGPG G +T+ L + +IA+ELD + L+ RF + VI+ DVL+ DL + V N+PY ++S + L+ H+ A A++M Q+E A R+ A PG + Y LSV QLHARV L Sbjct: 22 HKPKLGQNFLVSEAACRSIVEALGNLGARTVVEIGPGKGAITELLANRAERLIAIELDRELAPRLRERFARR---ETVTVIEDDVLRVDLSALARPGEKLLVVGNLPYYMTSEILLHLIRHEAAIERAVVMVQREVADRVAAGPGSRDYGLLSVTAQLHARVEKL 183
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_THESQ (Ribosomal RNA small subunit methyltransferase A OS=Thermotoga sp. (strain RQ2) GN=rsmA PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 7.898e-20 Identity = 62/162 (38.27%), Postives = 89/162 (54.94%), Query Frame = 1 Query: 64 ISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKT-DLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546 + K GQ L + + + IV+ A + DV++EIG G G LT++L + G VIA E+D + LQ R P +++ D LK D+P ICV+NIPY I+ PL K++ + F+ AI+M QKE R++A+PG K Y LSV Q V L Sbjct: 12 VRLKKHLGQVFLSDDRIAKRIVKAADLTPEDVVVEIGAGAGTLTEELTKTGARVIAYEIDESLAPILQERLSKYP---NVELRFEDFLKAKDVPEGAICVSNIPYNITGPLMEKII--EWKFKRAIVMVQKEVGERILAKPGKKTYGYLSVVVQTFYEVKKL 168
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_OENOB (Ribosomal RNA small subunit methyltransferase A OS=Oenococcus oeni (strain BAA-331 / PSU-1) GN=rsmA PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 7.898e-20 Identity = 61/162 (37.65%), Postives = 90/162 (55.56%), Query Frame = 1 Query: 73 HKSK--GQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFD-----ICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537 H SK GQ+ L + +++ IVQ A I D ++EIGPG G+LT++L + K V+A E+D +++ L + PY N ++++ D+LK D F VAN+PY I++P+ F LL F+ +M QKE A RL A G K Y LS+ Q V Sbjct: 23 HASKRLGQNFLIDLNVLQEIVQGAAIGPDDTVIEIGPGIGSLTEQLAKAAKQVVAYEIDKKLIPILSETLR--PYKN-VEIVNRDILKADFSIFAKNQSLKIVANLPYYITTPILFYLLNSSLNFKSVTVMMQKEVAARLQAGVGSKDYGELSLAIQYRVNV 181
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_MARMM (Ribosomal RNA small subunit methyltransferase A OS=Maricaulis maris (strain MCS10) GN=rsmA PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 7.898e-20 Identity = 64/157 (40.76%), Postives = 90/157 (57.32%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKM-VIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL------PYFDICVANIPYQISSPLTFKLLFHQPAF-RCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQ 522 KS GQH L + L I + AG S D +E+GPG G LT+ +L G ++AVE+DSR + L + RL V QGD L+ D P + ++N+PY + + L K L +P + R A++MFQ+E A R+VAQPGDK Y RL+V +Q Sbjct: 22 KSFGQHFLLDLNLTAKIARLAGDMSRDQAIEVGPGPGGLTRAILAEGAASLLAVEMDSRFLGALDEI--NVASGGRLTVEQGDALEVDETALLTGPGDKVILSNLPYNVGTQLLIKWLQAEPIWWRRAVLMFQREVADRVVAQPGDKAYGRLAVISQ 176
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_LYSSC (Ribosomal RNA small subunit methyltransferase A OS=Lysinibacillus sphaericus (strain C3-41) GN=rsmA PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 7.898e-20 Identity = 57/166 (34.34%), Postives = 94/166 (56.63%), Query Frame = 1 Query: 67 SFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD--------LPYFD--ICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHAR 534 SF KS GQ+ L +P ++ +IV A + +E+GPG G LT+ L K V++ E+D R++ L+ +PY+N + ++ D+LK D +P + + VAN+PY +++P+ KLL + R ++M QKE A R+ A+PG K Y LS+ Q + + Sbjct: 21 SFKKSLGQNFLIDPNILRNIVSHAKLTENSGAIEVGPGIGALTEHLARSAKKVVSFEIDQRLLPVLEDTL--SPYNN-VSIVHSDILKADVAKVIAEEMPGIEDIMVVANLPYYVTTPILMKLLNDRLPIRGFVVMMQKEVADRITAKPGTKEYGSLSIAIQYYVK 183
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_THENN (Ribosomal RNA small subunit methyltransferase A OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=rsmA PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.032e-19 Identity = 61/162 (37.65%), Postives = 91/162 (56.17%), Query Frame = 1 Query: 64 ISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKT-DLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546 I K GQ L + + + IV++A +K DV++EIG G G LT++L + G VIA E+D + LQ R P +++ D LK D+P ICV+NIPY ++ P+ K++ + F+ AI+M QKE R++++PG K Y LSV Q V L Sbjct: 12 IRLKKHLGQVFLSDDRIAKRIVKEADLKPDDVVVEIGAGAGTLTEELAKTGARVIAYEIDEGLAPILQERLSKYP---NVELRFEDFLKARDVPEEAICVSNIPYSVTGPIMEKII--EWRFKKAIVMVQKEVGERILSKPGRKSYGYLSVVVQTFYEVRKL 168
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_PROMT (Ribosomal RNA small subunit methyltransferase A OS=Prochlorococcus marinus (strain NATL2A) GN=rsmA PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.032e-19 Identity = 60/164 (36.59%), Postives = 93/164 (56.71%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLE-VGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP-----YFDICVANIPYQISSPLTFKLLFH-----QPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHAR 534 K GQH LK+ +++ IV+ A + D +LE+GPG G LT+KL+E + + A+ELD +V+ L++RF + N+ + +GD+L L + VANIPY I+ PL +L+ F +++ QKE A RL+A+PG + LSV QL A+ Sbjct: 16 KRFGQHWLKDQGVLDQIVKAAELNPEDCVLEVGPGKGALTEKLIESQARFIQAIELDRDLVVGLKKRFS---HQNKFSLREGDILSAPLDAENGLTINKVVANIPYNITGPLLKRLIGELRKAPDNCFETLVLLMQKEVAQRLLARPGTSNFSALSVRIQLLAK 176 The following BLAST results are available for this feature:
BLAST of DN617688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DN617688 ID=DN617688; Name=DN617688; organism=Citrus sinensis; type=EST; length=548bpback to top |