DN617688

Overview
NameDN617688
Unique NameDN617688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length548
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_SYNJB (Ribosomal RNA small subunit methyltransferase A OS=Synechococcus sp. GN=rsmA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.048e-20
Identity = 64/160 (40.00%), Postives = 92/160 (57.50%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDV------ILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL-PYFDICVANIPYQISSPLTFKLLFH--QPA--FRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQ 522
            K  GQH LK+P + E+I++ A +   +       +LEIGPGTG LT++LL  G  V+AVE+D  +   L++RF   P   R  +++GD L+  L P   + VANIPY ++  +  K+L    QP   F   +++ QKE A RL A PG K Y  LS+ TQ
Sbjct:    6 KRFGQHWLKDPAVHEAILRAAQLNDLERGADPTWVLEIGPGTGQLTRRLLAQGVQVVAVEIDRDLCRLLRKRFADQP---RFHLVEGDFLRLPLPPQPRLLVANIPYNLTGSILEKVLGSPAQPVRQFERIVLLVQKELAERLQAGPGSKAYGALSLRTQ 162          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_MYCMO (Ribosomal RNA small subunit methyltransferase A OS=Mycoplasma mobile GN=rsmA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.048e-20
Identity = 58/159 (36.48%), Postives = 98/159 (61.64%), Query Frame = 1
Query:   67 SFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFD--ICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537
            +F KS GQ+ L++  ++E IV    +++ DV LEIGPG G LT  L++  K V+A E+D  ++  L+ + ++  ++ + +    D LK+++ + D  I +ANIPY I+S + FK+  +   F  A+IM QKE A +L+A+  D  Y +LSV++Q  A +
Sbjct:    4 NFKKSLGQNFLQDKNIIEKIVNFIPLENEDV-LEIGPGQGALTNLLVKKSKNVLAYEIDKELIPFLKEKIKAKNFTLKHE----DFLKSEIDFQDKKIIIANIPYFITSDILFKIFENHKFFTKALIMVQKEIADKLIAKANDSNYGKLSVSSQFFANI 157          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_MACCJ (Ribosomal RNA small subunit methyltransferase A OS=Macrococcus caseolyticus (strain JCSC5402) GN=rsmA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.048e-20
Identity = 61/169 (36.09%), Postives = 91/169 (53.85%), Query Frame = 1
Query:   70 FHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL-----PYFDIC-----VANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546
            F KS GQ+ L +  ++ +I++ AGI  T  ++EIGPG G+LT++L +  K V+A E+D R++  L      +PY N + VI  D+LK D+      Y   C     VAN+PY I++P+   LL         ++M QKE   RL A P  K Y  LS+  Q +  V  +
Sbjct:   23 FKKSLGQNFLVDTNVIRNIIEAAGIDKTSGVIEIGPGMGSLTEQLAKHAKQVLAFEIDQRLIPILGETL--SPYDN-VTVINEDILKADVASAIETYLHHCDEIFVVANLPYYITTPILMGLLEKNLNINSYVVMMQKEVGERLSAIPSTKAYGSLSIAVQYYTDVKRI 188          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_ACIC5 (Ribosomal RNA small subunit methyltransferase A OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) GN=rsmA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.048e-20
Identity = 61/165 (36.97%), Postives = 88/165 (53.33%), Query Frame = 1
Query:   73 HKSK-GQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFD------ICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546
            HK K GQ+ L +     SIV+  G      ++EIGPG G +T+ L    + +IA+ELD  +   L+ RF        + VI+ DVL+ DL          + V N+PY ++S +   L+ H+ A   A++M Q+E A R+ A PG + Y  LSV  QLHARV  L
Sbjct:   22 HKPKLGQNFLVSEAACRSIVEALGNLGARTVVEIGPGKGAITELLANRAERLIAIELDRELAPRLRERFARR---ETVTVIEDDVLRVDLSALARPGEKLLVVGNLPYYMTSEILLHLIRHEAAIERAVVMVQREVADRVAAGPGSRDYGLLSVTAQLHARVEKL 183          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_THESQ (Ribosomal RNA small subunit methyltransferase A OS=Thermotoga sp. (strain RQ2) GN=rsmA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.898e-20
Identity = 62/162 (38.27%), Postives = 89/162 (54.94%), Query Frame = 1
Query:   64 ISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKT-DLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546
            +   K  GQ  L +  + + IV+ A +   DV++EIG G G LT++L + G  VIA E+D  +   LQ R    P    +++   D LK  D+P   ICV+NIPY I+ PL  K++  +  F+ AI+M QKE   R++A+PG K Y  LSV  Q    V  L
Sbjct:   12 VRLKKHLGQVFLSDDRIAKRIVKAADLTPEDVVVEIGAGAGTLTEELTKTGARVIAYEIDESLAPILQERLSKYP---NVELRFEDFLKAKDVPEGAICVSNIPYNITGPLMEKII--EWKFKRAIVMVQKEVGERILAKPGKKTYGYLSVVVQTFYEVKKL 168          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_OENOB (Ribosomal RNA small subunit methyltransferase A OS=Oenococcus oeni (strain BAA-331 / PSU-1) GN=rsmA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.898e-20
Identity = 61/162 (37.65%), Postives = 90/162 (55.56%), Query Frame = 1
Query:   73 HKSK--GQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFD-----ICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537
            H SK  GQ+ L +  +++ IVQ A I   D ++EIGPG G+LT++L +  K V+A E+D +++  L    +  PY N ++++  D+LK D   F        VAN+PY I++P+ F LL     F+   +M QKE A RL A  G K Y  LS+  Q    V
Sbjct:   23 HASKRLGQNFLIDLNVLQEIVQGAAIGPDDTVIEIGPGIGSLTEQLAKAAKQVVAYEIDKKLIPILSETLR--PYKN-VEIVNRDILKADFSIFAKNQSLKIVANLPYYITTPILFYLLNSSLNFKSVTVMMQKEVAARLQAGVGSKDYGELSLAIQYRVNV 181          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_MARMM (Ribosomal RNA small subunit methyltransferase A OS=Maricaulis maris (strain MCS10) GN=rsmA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.898e-20
Identity = 64/157 (40.76%), Postives = 90/157 (57.32%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKM-VIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL------PYFDICVANIPYQISSPLTFKLLFHQPAF-RCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQ 522
            KS GQH L +  L   I + AG  S D  +E+GPG G LT+ +L  G   ++AVE+DSR +  L     +     RL V QGD L+ D       P   + ++N+PY + + L  K L  +P + R A++MFQ+E A R+VAQPGDK Y RL+V +Q
Sbjct:   22 KSFGQHFLLDLNLTAKIARLAGDMSRDQAIEVGPGPGGLTRAILAEGAASLLAVEMDSRFLGALDEI--NVASGGRLTVEQGDALEVDETALLTGPGDKVILSNLPYNVGTQLLIKWLQAEPIWWRRAVLMFQREVADRVVAQPGDKAYGRLAVISQ 176          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_LYSSC (Ribosomal RNA small subunit methyltransferase A OS=Lysinibacillus sphaericus (strain C3-41) GN=rsmA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.898e-20
Identity = 57/166 (34.34%), Postives = 94/166 (56.63%), Query Frame = 1
Query:   67 SFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD--------LPYFD--ICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHAR 534
            SF KS GQ+ L +P ++ +IV  A +      +E+GPG G LT+ L    K V++ E+D R++  L+     +PY+N + ++  D+LK D        +P  +  + VAN+PY +++P+  KLL  +   R  ++M QKE A R+ A+PG K Y  LS+  Q + +
Sbjct:   21 SFKKSLGQNFLIDPNILRNIVSHAKLTENSGAIEVGPGIGALTEHLARSAKKVVSFEIDQRLLPVLEDTL--SPYNN-VSIVHSDILKADVAKVIAEEMPGIEDIMVVANLPYYVTTPILMKLLNDRLPIRGFVVMMQKEVADRITAKPGTKEYGSLSIAIQYYVK 183          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_THENN (Ribosomal RNA small subunit methyltransferase A OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=rsmA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.032e-19
Identity = 61/162 (37.65%), Postives = 91/162 (56.17%), Query Frame = 1
Query:   64 ISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKT-DLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546
            I   K  GQ  L +  + + IV++A +K  DV++EIG G G LT++L + G  VIA E+D  +   LQ R    P    +++   D LK  D+P   ICV+NIPY ++ P+  K++  +  F+ AI+M QKE   R++++PG K Y  LSV  Q    V  L
Sbjct:   12 IRLKKHLGQVFLSDDRIAKRIVKEADLKPDDVVVEIGAGAGTLTEELAKTGARVIAYEIDEGLAPILQERLSKYP---NVELRFEDFLKARDVPEEAICVSNIPYSVTGPIMEKII--EWRFKKAIVMVQKEVGERILSKPGRKSYGYLSVVVQTFYEVRKL 168          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_PROMT (Ribosomal RNA small subunit methyltransferase A OS=Prochlorococcus marinus (strain NATL2A) GN=rsmA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.032e-19
Identity = 60/164 (36.59%), Postives = 93/164 (56.71%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLE-VGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP-----YFDICVANIPYQISSPLTFKLLFH-----QPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHAR 534
            K  GQH LK+  +++ IV+ A +   D +LE+GPG G LT+KL+E   + + A+ELD  +V+ L++RF    + N+  + +GD+L   L        +  VANIPY I+ PL  +L+          F   +++ QKE A RL+A+PG   +  LSV  QL A+
Sbjct:   16 KRFGQHWLKDQGVLDQIVKAAELNPEDCVLEVGPGKGALTEKLIESQARFIQAIELDRDLVVGLKKRFS---HQNKFSLREGDILSAPLDAENGLTINKVVANIPYNITGPLLKRLIGELRKAPDNCFETLVLLMQKEVAQRLLARPGTSNFSALSVRIQLLAK 176          
The following BLAST results are available for this feature:
BLAST of DN617688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RSMA_SYNJB6.048e-2040.00Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_MYCMO6.048e-2036.48Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_MACCJ6.048e-2036.09Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_ACIC56.048e-2036.97Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_THESQ7.898e-2038.27Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_OENOB7.898e-2037.65Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_MARMM7.898e-2040.76Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_LYSSC7.898e-2034.34Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_THENN1.032e-1937.65Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_PROMT1.032e-1936.59Ribosomal RNA small subunit methyltransferase A OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I22_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617688 ID=DN617688; Name=DN617688; organism=Citrus sinensis; type=EST; length=548bp
AGGAAGGAGAAAGGAAAGCAGAAAAGTGGACCGTATCAAGGACAAGGACT
AGGAGCAGGAGGTATATCCTTCCACAAATCAAAGGGGCAGCACATTCTGA
AGAACCCTTTGCTTGTGGAGAGCATCGTCCAAAAAGCCGGCATCAAGAGC
ACCGATGTCATTCTTGAGATTGGTCCCGGCACTGGTAATCTCACCAAAAA
GCTTCTGGAAGTTGGCAAGATGGTCATCGCTGTCGAGCTTGACTCTCGTA
TGGTTCTCGAGCTCCAGCGCCGTTTTCAATCCACCCCTTACTCCAACCGT
TTAAAGGTCATTCAGGGTGATGTCCTCAAGACTGATCTTCCCTATTTTGA
TATATGTGTGGCAAACATCCCGTACCAAATCTCCTCCCCACTCACATTCA
AGTTGTTGTTTCACCAACCTGCCTTCAGATGCGCGATTATTATGTTCCAG
AAAGAATTTGCTATGAGACTTGTTGCTCAACCCGGTGACAAGCTCTACTG
TCGTCTTTCTGTGAATACACAACTTCATGCTCGGGTCTCCCACCTCCT
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