DN617688
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_NATPD (Probable ribosomal RNA small subunit methyltransferase A OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rsmA PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.032e-19 Identity = 56/129 (43.41%), Postives = 75/129 (58.14%), Query Frame = 1 Query: 151 TDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537 TD +LEIG GTG LT +LL+V V +E D + L F + L VI+GD L+ LP F V+N+PY +SS + F+LL P R ++MFQ+EFA R+ A+PG Y RLSV +A V Sbjct: 43 TDHVLEIGGGTGALTDRLLDVADRVTVIERDPGLATFLTDEFADEIEAGSLTVIEGDALEVPLPDFTASVSNLPYGVSSEIAFRLL---PEKRPLVLMFQQEFAERMAAEPGTDEYGRLSVTAGHYADV 168
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_LACS1 (Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=rsmA PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.032e-19 Identity = 61/163 (37.42%), Postives = 93/163 (57.06%), Query Frame = 1 Query: 64 ISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL-----PYFD-----ICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQ 522 ++F KS GQ+ L + ++++IV A + D ++EIGPG G LT++L + V+A+E+D R++ L +PY N ++V+ D+LK DL +F+ VAN+PY I++P+ LL F ++M QKE A RL A PG K Y LSV Q Sbjct: 23 LTFKKSLGQNFLTDINILKNIVAAAEVSEEDNVIEIGPGIGALTEQLAKRANKVMALEIDDRLLPVLADTL--SPYEN-VEVVHQDILKADLKALIAEHFEPGHKLKLVANLPYYITTPILMHLLDSGIEFETIVVMMQKEVAERLAANPGTKAYGSLSVAVQ 182
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_GEOTN (Ribosomal RNA small subunit methyltransferase A OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rsmA PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.032e-19 Identity = 62/164 (37.80%), Postives = 90/164 (54.88%), Query Frame = 1 Query: 67 SFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYF----------DICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLH 528 SF KS GQ+ L + ++ IV AGI +EIGPG G LT++L K V+A E+DSR++ L + Y N +++I DVLK DL + VAN+PY +++P+ KLL + R ++M QKE A RL A+PG K Y L++ Q + Sbjct: 21 SFKKSLGQNFLIDTNILRKIVDAAGISGDTGAIEIGPGIGALTEQLARRAKKVVAFEIDSRLLPILADTLSA--YDN-VRIIHQDVLKADLHAVIAEEFAEVSDRMVVANLPYYVTTPIIMKLLTERLPIRGMVVMMQKEVADRLAAKPGTKDYGSLTIAVQYY 181
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_BACLD (Ribosomal RNA small subunit methyltransferase A OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rsmA PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.032e-19 Identity = 61/164 (37.20%), Postives = 91/164 (55.49%), Query Frame = 1 Query: 67 SFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL-----PYFDIC-----VANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLH 528 SF KS GQ+ L + +++ IV AG+ ++EIGPG G LT++L + K V A E+D R++ L+ +PY N + VI DVLK D+ F C VAN+PY +++P+ KLL + ++M QKE A R+ A+P K Y LS+ Q + Sbjct: 21 SFKKSLGQNFLIDTNILDRIVDHAGVTERTGVIEIGPGIGALTEQLAKRAKKVTAFEIDQRLLPILEDTL--SPYDN-VTVIHQDVLKADVRAVMDEQFQDCDEVMVVANLPYYVTTPIIMKLLEENLPLKGIVVMLQKEVADRMAAKPSSKEYGSLSIAVQFY 181
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_ACAM1 (Ribosomal RNA small subunit methyltransferase A OS=Acaryochloris marina (strain MBIC 11017) GN=rsmA PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.032e-19 Identity = 61/160 (38.12%), Postives = 88/160 (55.00%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL------PYFDICVANIPYQISSPLTFKLLFH-----QPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQ 522 K QH LK+ ++ I+ A I+ D ILEIGPG G LT++LL + V++VELD + L+ F +++ D L D+ P + VANIPY I+SP+ KLL QP + +++ QKE A RLVA+PG K++ LSV +Q Sbjct: 6 KRFAQHWLKSQAVLRQIIAAAKIQGCDRILEIGPGRGVLTRELLAQAQSVVSVELDRDLCKSLRHTFND---QENFTLLELDFLNLDVAAELTEPLPNKVVANIPYNITSPILSKLLGRIDAPAQPVYETVVLLIQKEVADRLVAEPGSKIFNGLSVRSQ 162
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_SYNSC (Ribosomal RNA small subunit methyltransferase A OS=Synechococcus sp. (strain CC9605) GN=rsmA PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 1.347e-19 Identity = 65/164 (39.63%), Postives = 93/164 (56.71%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP-----YFDICVANIPYQISSPLTFKLLFH-----QPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHAR 534 K GQH L + +++ I++ A ++STD +LE+GPG G LT++LL G K V A+ELD +V L+ RF P + QGDVL+ L D VANIPY I+ PL +L+ P ++ +++ QKE A R+ A+PG + LSV QL AR Sbjct: 10 KRFGQHWLLDESVLQRIIEAADLQSTDRVLEVGPGRGALTERLLAAGLKAVHAIELDRDLVQGLRDRFVVQP---GFSLHQGDVLEAPLELSDGRIADKVVANIPYNITGPLLERLVGRLDRPVDPPYQRLVLLVQKEVAERIRARPGHSSFSALSVRMQLLAR 170
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_PSESM (Ribosomal RNA small subunit methyltransferase A OS=Pseudomonas syringae pv. tomato GN=rsmA PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 1.347e-19 Identity = 64/163 (39.26%), Postives = 84/163 (51.53%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL------PYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546 K GQ+ L + +++ I++ K D +LEIGPG G LT+ LL G + VELD ++ L +F S P N + QGD LK D P V N+PY IS+PL F LL + R M QKE R+ A PG + RLS+ Q H RV HL Sbjct: 11 KRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLNSGAQLDVVELDKDLIPILNSQFASQPNFN---LHQGDALKFDFNTLGAEPRSLRVVGNLPYNISTPLIFHLLQNASLIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHL 170
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_LACSS (Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=rsmA PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 1.347e-19 Identity = 58/166 (34.94%), Postives = 92/166 (55.42%), Query Frame = 1 Query: 70 FHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP-----YFD-----ICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537 F KS GQ+ L N +++ IV+ I D ++EIGPG G+LT+++ V++ E+D R++ L+ + + + + V+ D+L+ DLP +FD VAN+PY I++P+ LL ++M QKE A R+ A PG K Y LS+ QLH+ V Sbjct: 21 FKKSLGQNFLTNITILKQIVEAGEITKDDDVIEIGPGIGSLTEQIARKAHQVLSFEIDDRLIPVLK---DTLNHYHNVTVLNQDILEADLPTLIAKHFDGQHNLKIVANLPYYITTPIMLHLLEAGLPIDRMVLMMQKEVAERIDAAPGSKAYGSLSIAVQLHSEV 183
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_HALMA (Probable ribosomal RNA small subunit methyltransferase A OS=Haloarcula marismortui GN=rsmA PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 1.347e-19 Identity = 58/152 (38.16%), Postives = 84/152 (55.26%), Query Frame = 1 Query: 88 QHILKNPLLVESIVQKAGIKSTDV--ILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537 QH L + +++ I + A D+ +LEIG G G LT +LL + V AVE D L+ F ++RL +++GD L+ DLP F ++N+PY SS + F+LL P R ++MFQ+EFA R+ A P Y RLSV +A V Sbjct: 28 QHFLVDDRVLDRIPEYATDADIDLSHVLEIGAGPGALTDRLLATAERVTAVERDPDFAAHLREEFTEEVAADRLTIVEGDALEVDLPDFTASISNLPYGASSEIAFRLL---PEQRPLLLMFQQEFAERMAADPATDDYGRLSVTAGHYADV 176
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_SYNY3 (Ribosomal RNA small subunit methyltransferase A OS=Synechocystis sp. (strain PCC 6803) GN=rsmA PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 1.760e-19 Identity = 71/177 (40.11%), Postives = 93/177 (52.54%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKS--------TDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL-------PYF---DICVANIPYQISSPLTFKLLF-----HQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537 K GQH L + +++IV A I+S D +LEIGPG G LTK+LL G V+AVELD + L+L+++ +++GDVL DL P F + VANIPY I+SP+ LL P F +++ QKE A RL AQP K Y LSV Q ARV Sbjct: 7 KRFGQHWLNHEPTLQAIVAAADIQSGAPQSGSLRDRLLEIGPGMGVLTKQLLATGNPVVAVELDRDLCLKLRKKLGQ---RENFLLLEGDVLILDLNALLQDFPQFSPLNKVVANIPYNITSPILELLLGTIQKPRVPGFETIVLLVQKEIAERLTAQPSTKAYGALSVRMQYLARV 180 The following BLAST results are available for this feature:
BLAST of DN617688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DN617688 ID=DN617688; Name=DN617688; organism=Citrus sinensis; type=EST; length=548bpback to top |