DN617688

Overview
NameDN617688
Unique NameDN617688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length548
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_NATPD (Probable ribosomal RNA small subunit methyltransferase A OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rsmA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.032e-19
Identity = 56/129 (43.41%), Postives = 75/129 (58.14%), Query Frame = 1
Query:  151 TDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537
            TD +LEIG GTG LT +LL+V   V  +E D  +   L   F     +  L VI+GD L+  LP F   V+N+PY +SS + F+LL   P  R  ++MFQ+EFA R+ A+PG   Y RLSV    +A V
Sbjct:   43 TDHVLEIGGGTGALTDRLLDVADRVTVIERDPGLATFLTDEFADEIEAGSLTVIEGDALEVPLPDFTASVSNLPYGVSSEIAFRLL---PEKRPLVLMFQQEFAERMAAEPGTDEYGRLSVTAGHYADV 168          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_LACS1 (Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=rsmA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.032e-19
Identity = 61/163 (37.42%), Postives = 93/163 (57.06%), Query Frame = 1
Query:   64 ISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL-----PYFD-----ICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQ 522
            ++F KS GQ+ L +  ++++IV  A +   D ++EIGPG G LT++L +    V+A+E+D R++  L      +PY N ++V+  D+LK DL      +F+       VAN+PY I++P+   LL     F   ++M QKE A RL A PG K Y  LSV  Q
Sbjct:   23 LTFKKSLGQNFLTDINILKNIVAAAEVSEEDNVIEIGPGIGALTEQLAKRANKVMALEIDDRLLPVLADTL--SPYEN-VEVVHQDILKADLKALIAEHFEPGHKLKLVANLPYYITTPILMHLLDSGIEFETIVVMMQKEVAERLAANPGTKAYGSLSVAVQ 182          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_GEOTN (Ribosomal RNA small subunit methyltransferase A OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rsmA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.032e-19
Identity = 62/164 (37.80%), Postives = 90/164 (54.88%), Query Frame = 1
Query:   67 SFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYF----------DICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLH 528
            SF KS GQ+ L +  ++  IV  AGI      +EIGPG G LT++L    K V+A E+DSR++  L     +  Y N +++I  DVLK DL              + VAN+PY +++P+  KLL  +   R  ++M QKE A RL A+PG K Y  L++  Q +
Sbjct:   21 SFKKSLGQNFLIDTNILRKIVDAAGISGDTGAIEIGPGIGALTEQLARRAKKVVAFEIDSRLLPILADTLSA--YDN-VRIIHQDVLKADLHAVIAEEFAEVSDRMVVANLPYYVTTPIIMKLLTERLPIRGMVVMMQKEVADRLAAKPGTKDYGSLTIAVQYY 181          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_BACLD (Ribosomal RNA small subunit methyltransferase A OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rsmA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.032e-19
Identity = 61/164 (37.20%), Postives = 91/164 (55.49%), Query Frame = 1
Query:   67 SFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL-----PYFDIC-----VANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLH 528
            SF KS GQ+ L +  +++ IV  AG+     ++EIGPG G LT++L +  K V A E+D R++  L+     +PY N + VI  DVLK D+       F  C     VAN+PY +++P+  KLL      +  ++M QKE A R+ A+P  K Y  LS+  Q +
Sbjct:   21 SFKKSLGQNFLIDTNILDRIVDHAGVTERTGVIEIGPGIGALTEQLAKRAKKVTAFEIDQRLLPILEDTL--SPYDN-VTVIHQDVLKADVRAVMDEQFQDCDEVMVVANLPYYVTTPIIMKLLEENLPLKGIVVMLQKEVADRMAAKPSSKEYGSLSIAVQFY 181          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_ACAM1 (Ribosomal RNA small subunit methyltransferase A OS=Acaryochloris marina (strain MBIC 11017) GN=rsmA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.032e-19
Identity = 61/160 (38.12%), Postives = 88/160 (55.00%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL------PYFDICVANIPYQISSPLTFKLLFH-----QPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQ 522
            K   QH LK+  ++  I+  A I+  D ILEIGPG G LT++LL   + V++VELD  +   L+  F          +++ D L  D+      P  +  VANIPY I+SP+  KLL       QP +   +++ QKE A RLVA+PG K++  LSV +Q
Sbjct:    6 KRFAQHWLKSQAVLRQIIAAAKIQGCDRILEIGPGRGVLTRELLAQAQSVVSVELDRDLCKSLRHTFND---QENFTLLELDFLNLDVAAELTEPLPNKVVANIPYNITSPILSKLLGRIDAPAQPVYETVVLLIQKEVADRLVAEPGSKIFNGLSVRSQ 162          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_SYNSC (Ribosomal RNA small subunit methyltransferase A OS=Synechococcus sp. (strain CC9605) GN=rsmA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.347e-19
Identity = 65/164 (39.63%), Postives = 93/164 (56.71%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP-----YFDICVANIPYQISSPLTFKLLFH-----QPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHAR 534
            K  GQH L +  +++ I++ A ++STD +LE+GPG G LT++LL  G K V A+ELD  +V  L+ RF   P      + QGDVL+  L        D  VANIPY I+ PL  +L+        P ++  +++ QKE A R+ A+PG   +  LSV  QL AR
Sbjct:   10 KRFGQHWLLDESVLQRIIEAADLQSTDRVLEVGPGRGALTERLLAAGLKAVHAIELDRDLVQGLRDRFVVQP---GFSLHQGDVLEAPLELSDGRIADKVVANIPYNITGPLLERLVGRLDRPVDPPYQRLVLLVQKEVAERIRARPGHSSFSALSVRMQLLAR 170          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_PSESM (Ribosomal RNA small subunit methyltransferase A OS=Pseudomonas syringae pv. tomato GN=rsmA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.347e-19
Identity = 64/163 (39.26%), Postives = 84/163 (51.53%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL------PYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546
            K  GQ+ L +  +++ I++    K  D +LEIGPG G LT+ LL  G  +  VELD  ++  L  +F S P  N   + QGD LK D       P     V N+PY IS+PL F LL +    R    M QKE   R+ A PG   + RLS+  Q H RV HL
Sbjct:   11 KRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLNSGAQLDVVELDKDLIPILNSQFASQPNFN---LHQGDALKFDFNTLGAEPRSLRVVGNLPYNISTPLIFHLLQNASLIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHL 170          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_LACSS (Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=rsmA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.347e-19
Identity = 58/166 (34.94%), Postives = 92/166 (55.42%), Query Frame = 1
Query:   70 FHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP-----YFD-----ICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537
            F KS GQ+ L N  +++ IV+   I   D ++EIGPG G+LT+++      V++ E+D R++  L+    +  + + + V+  D+L+ DLP     +FD       VAN+PY I++P+   LL         ++M QKE A R+ A PG K Y  LS+  QLH+ V
Sbjct:   21 FKKSLGQNFLTNITILKQIVEAGEITKDDDVIEIGPGIGSLTEQIARKAHQVLSFEIDDRLIPVLK---DTLNHYHNVTVLNQDILEADLPTLIAKHFDGQHNLKIVANLPYYITTPIMLHLLEAGLPIDRMVLMMQKEVAERIDAAPGSKAYGSLSIAVQLHSEV 183          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_HALMA (Probable ribosomal RNA small subunit methyltransferase A OS=Haloarcula marismortui GN=rsmA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.347e-19
Identity = 58/152 (38.16%), Postives = 84/152 (55.26%), Query Frame = 1
Query:   88 QHILKNPLLVESIVQKAGIKSTDV--ILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537
            QH L +  +++ I + A     D+  +LEIG G G LT +LL   + V AVE D      L+  F     ++RL +++GD L+ DLP F   ++N+PY  SS + F+LL   P  R  ++MFQ+EFA R+ A P    Y RLSV    +A V
Sbjct:   28 QHFLVDDRVLDRIPEYATDADIDLSHVLEIGAGPGALTDRLLATAERVTAVERDPDFAAHLREEFTEEVAADRLTIVEGDALEVDLPDFTASISNLPYGASSEIAFRLL---PEQRPLLLMFQQEFAERMAADPATDDYGRLSVTAGHYADV 176          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_SYNY3 (Ribosomal RNA small subunit methyltransferase A OS=Synechocystis sp. (strain PCC 6803) GN=rsmA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.760e-19
Identity = 71/177 (40.11%), Postives = 93/177 (52.54%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKS--------TDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL-------PYF---DICVANIPYQISSPLTFKLLF-----HQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537
            K  GQH L +   +++IV  A I+S         D +LEIGPG G LTK+LL  G  V+AVELD  + L+L+++           +++GDVL  DL       P F   +  VANIPY I+SP+   LL        P F   +++ QKE A RL AQP  K Y  LSV  Q  ARV
Sbjct:    7 KRFGQHWLNHEPTLQAIVAAADIQSGAPQSGSLRDRLLEIGPGMGVLTKQLLATGNPVVAVELDRDLCLKLRKKLGQ---RENFLLLEGDVLILDLNALLQDFPQFSPLNKVVANIPYNITSPILELLLGTIQKPRVPGFETIVLLVQKEIAERLTAQPSTKAYGALSVRMQYLARV 180          
The following BLAST results are available for this feature:
BLAST of DN617688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RSMA_NATPD1.032e-1943.41Probable ribosomal RNA small subunit methyltransfe... [more]
RSMA_LACS11.032e-1937.42Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_GEOTN1.032e-1937.80Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_BACLD1.032e-1937.20Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_ACAM11.032e-1938.13Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_SYNSC1.347e-1939.63Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_PSESM1.347e-1939.26Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_LACSS1.347e-1934.94Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_HALMA1.347e-1938.16Probable ribosomal RNA small subunit methyltransfe... [more]
RSMA_SYNY31.760e-1940.11Ribosomal RNA small subunit methyltransferase A OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I22_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617688 ID=DN617688; Name=DN617688; organism=Citrus sinensis; type=EST; length=548bp
AGGAAGGAGAAAGGAAAGCAGAAAAGTGGACCGTATCAAGGACAAGGACT
AGGAGCAGGAGGTATATCCTTCCACAAATCAAAGGGGCAGCACATTCTGA
AGAACCCTTTGCTTGTGGAGAGCATCGTCCAAAAAGCCGGCATCAAGAGC
ACCGATGTCATTCTTGAGATTGGTCCCGGCACTGGTAATCTCACCAAAAA
GCTTCTGGAAGTTGGCAAGATGGTCATCGCTGTCGAGCTTGACTCTCGTA
TGGTTCTCGAGCTCCAGCGCCGTTTTCAATCCACCCCTTACTCCAACCGT
TTAAAGGTCATTCAGGGTGATGTCCTCAAGACTGATCTTCCCTATTTTGA
TATATGTGTGGCAAACATCCCGTACCAAATCTCCTCCCCACTCACATTCA
AGTTGTTGTTTCACCAACCTGCCTTCAGATGCGCGATTATTATGTTCCAG
AAAGAATTTGCTATGAGACTTGTTGCTCAACCCGGTGACAAGCTCTACTG
TCGTCTTTCTGTGAATACACAACTTCATGCTCGGGTCTCCCACCTCCT
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