DN617688
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_FRAP2 (Ribosomal RNA small subunit methyltransferase A OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=rsmA PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 1.760e-19 Identity = 60/158 (37.97%), Postives = 82/158 (51.90%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDI-------CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLH 528 KS GQ+ L++ ++ IVQ A IK D++LEIGPG G LT+ +L+ V VE D+ ++ L Q+ KV D LK DL + N+PY ISSP+ FK++ A M QKE R+++QP K Y RLSV Q H Sbjct: 9 KSLGQNFLQDENIIRKIVQLANIKKDDIVLEIGPGLGALTRYILKCSDNVNVVEFDASVIDTL---LQNCQKYGEPKVFNEDFLKFDLDIVRADSQQKLKLIGNLPYNISSPILFKVIEQSDKIIDAHFMLQKEVVERIISQPNSKTYGRLSVILQYH 163
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_BACHD (Ribosomal RNA small subunit methyltransferase A OS=Bacillus halodurans GN=rsmA PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 1.760e-19 Identity = 61/165 (36.97%), Postives = 92/165 (55.76%), Query Frame = 1 Query: 67 SFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPY-----FD-----ICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHA 531 +F KS GQ+ L +P ++ +IV A + +EIGPG G LT++L K V+A E+D R++ L+ PY N + VI DVLK D+ F+ + VAN+PY +++P+ KLL + R ++M Q E A R+ A+PG K Y LS+ Q +A Sbjct: 21 TFKKSLGQNFLIDPNVLRNIVDVASLTPQSGAIEIGPGIGALTEQLARQAKRVVAFEIDQRLIPVLRETL--APYEN-VTVINEDVLKADVKQVIATTFEEGQDLMVVANLPYYVTTPILMKLLEAKLPVRGIVVMIQAEVADRIAAKPGTKEYGSLSIAAQYYA 182
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_SYNS9 (Ribosomal RNA small subunit methyltransferase A OS=Synechococcus sp. (strain CC9902) GN=rsmA PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.298e-19 Identity = 62/166 (37.35%), Postives = 92/166 (55.42%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLL-EVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFD-----ICVANIPYQISSPLTFKLLFH-----QPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVS 540 K GQH L++ +++ IV+ A ++ D +LE+GPG G LT++LL + A+ELD +V L RF S +R + +GDVL+ L D VANIPY I+ PL +L+ +P + C +++ QKE A R+ A+PG + LSV QL A S Sbjct: 10 KRFGQHWLRDARVLDQIVEAARLQQDDCVLEVGPGRGALTERLLASPAAQIHAIELDRDLVRGLHDRFGS---ESRFSLREGDVLEAPLHLVDGGFANKVVANIPYNITGPLLARLIGRLDRPVEPTYDCLVLLLQKEVAERIRAKPGRSSFSALSVRMQLLADCS 172
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_RALEH (Ribosomal RNA small subunit methyltransferase A OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=rsmA PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.298e-19 Identity = 62/163 (38.04%), Postives = 84/163 (51.53%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDI------CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546 K GQ+ L + ++ IV ++ DV++EIGPG G LT LLE + VELD +V L+RR Y RL+V GD L D + V N+PY ISSPL F L+ R M QKE R+VA+PG K + RLS+ Q+ + H+ Sbjct: 13 KRFGQNFLVDDTIIHGIVNAISPQADDVLVEIGPGLGALTDPLLERIPQMQVVELDRDLVERLRRR-----YGERLQVHAGDALAFDFDKLAVPGRPLRIVGNLPYNISSPLLFHLMDFADHVRDQHFMLQKEVVERMVAEPGSKAFGRLSIMLQVRYYMEHV 170
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_PSEU2 (Ribosomal RNA small subunit methyltransferase A OS=Pseudomonas syringae pv. syringae (strain B728a) GN=rsmA PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.298e-19 Identity = 63/163 (38.65%), Postives = 85/163 (52.15%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL------PYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546 K GQ+ L + +++ I++ + D +LEIGPG G LT+ LL+ G + VELD ++ L +F S P N + QGD LK D P V N+PY IS+PL F LL + R M QKE R+ A PG + RLS+ Q H RV HL Sbjct: 11 KRFGQNFLHDAGVIDKILRAIRARPEDRLLEIGPGQGALTEGLLDSGAQLDVVELDKDLIPILNGQFASKPNFN---LHQGDALKFDFNTLGADPRSLRVVGNLPYNISTPLIFHLLQNASLIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHL 170
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_NOCFA (Ribosomal RNA small subunit methyltransferase A OS=Nocardia farcinica GN=rsmA PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.298e-19 Identity = 56/147 (38.10%), Postives = 83/147 (56.46%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRF--QSTPYSNRLKVIQGDVLK---TDLPYFDIC-VANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLY 498 K GQ+ + + V IV AG+ D +LE+GPG G+LT LL+V V+AVE+D + L R ++ + RL+V++ D L+ DLP VAN+PY ++ P+ LL P R A++M Q E A RL A+PG ++Y Sbjct: 33 KQLGQNFVHDANTVRRIVTAAGVGRADTVLEVGPGLGSLTLALLDVVDSVVAVEIDPVLAEHLPRTVADRAPALAGRLRVVRDDALRVRAADLPASPTALVANLPYNVAVPVLLHLLAELPGLRTALVMVQAEVADRLAAEPGSRVY 179
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_GEOMG (Ribosomal RNA small subunit methyltransferase A OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rsmA PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.298e-19 Identity = 62/169 (36.69%), Postives = 93/169 (55.03%), Query Frame = 1 Query: 64 ISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICV----------ANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVS 540 I K+ GQ+ L + ++ I ++ D ILE+GPG G LT+ L ++AVELD+R+V L++ F+ P R++++ GD+L+ DL D+ AN+PY IS+P+ F L ++ F ++M QKE RL A PG K Y LSV QLH V+ Sbjct: 6 IRARKALGQNFLVDRHVLARIADIVDMRPDDRILEVGPGKGALTEMLAHRCARLVAVELDTRLVPVLRQAFRDNP---RVEIVHGDILEIDLR--DLLAYEGGERWKVAANLPYNISTPVLFAFLDNRDLFSRLVLMLQKEVGDRLAASPGTKDYGILSVFFQLHFDVT 169
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_CORDI (Ribosomal RNA small subunit methyltransferase A OS=Corynebacterium diphtheriae GN=rsmA PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.298e-19 Identity = 58/159 (36.48%), Postives = 86/159 (54.09%), Query Frame = 1 Query: 76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMV--LELQRRFQSTPYSNRLKVIQGDVLKT---DLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537 K GQ+ + +P V IV A + S D ++E+GPG G+LT LL+ + V AVE+D R+ L L ++ +++RL +I D L D+ + VAN+PY +S P+ LL P R ++M Q E A RL A PG+K+Y SV + V Sbjct: 28 KKLGQNFVHDPNTVRMIVSAADLNSDDHVIEVGPGLGSLTLALLDTAQKVTAVEIDPRLAQQLPLTVAERAGQFADRLNLIHKDALTVAPDDIDHPTALVANLPYNVSVPVLLHLLQIFPTIRRVLVMVQAEVADRLAADPGNKVYGVPSVKASFYGNV 186
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_ANOFW (Ribosomal RNA small subunit methyltransferase A OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=rsmA PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.298e-19 Identity = 59/164 (35.98%), Postives = 92/164 (56.10%), Query Frame = 1 Query: 67 SFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL------PYFDI----CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLH 528 SF KS GQ+ L P ++ IV A + ++EIGPG G LT++L K V+A E+D R++ L +PY+N + +I D+LK D+ + D+ VAN+PY +++P+ KLL + R ++M QKE A R+ A+PG K Y L++ Q + Sbjct: 21 SFKKSLGQNFLIEPNILHRIVDFAQLSERTGVIEIGPGIGALTEQLARRAKKVVAFEIDQRLLPILADTL--SPYTN-VSIIHEDILKADVQQVIAEQFTDVDDIMVVANLPYYVTTPIIMKLLTDRLPIRGMVVMLQKEVADRMAAKPGTKDYGSLTIAVQYY 181
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_THEMA (Ribosomal RNA small subunit methyltransferase A OS=Thermotoga maritima GN=rsmA PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 3.001e-19 Identity = 61/162 (37.65%), Postives = 89/162 (54.94%), Query Frame = 1 Query: 64 ISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKT-DLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546 + K GQ L + + + IV+ A + DV++EIG G G LT++L + G VIA E+D + LQ R P +++ D LK ++P ICV+NIPY I+ PL K++ + F+ AI+M QKE R++A+PG K Y LSV Q V L Sbjct: 31 VRLKKHLGQVFLSDDRIAKRIVKAAELTPEDVVVEIGAGAGTLTEELAKTGARVIAYEIDESLAPILQERLSKYP---NVELRFEDFLKAKNVPEGAICVSNIPYNITGPLMEKII--EWKFKRAIVMIQKEVGERILAKPGKKTYGYLSVVVQTFYEVKKL 187 The following BLAST results are available for this feature:
BLAST of DN617688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DN617688 ID=DN617688; Name=DN617688; organism=Citrus sinensis; type=EST; length=548bpback to top |