DN617688

Overview
NameDN617688
Unique NameDN617688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length548
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_FRAP2 (Ribosomal RNA small subunit methyltransferase A OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=rsmA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.760e-19
Identity = 60/158 (37.97%), Postives = 82/158 (51.90%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDI-------CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLH 528
            KS GQ+ L++  ++  IVQ A IK  D++LEIGPG G LT+ +L+    V  VE D+ ++  L    Q+       KV   D LK DL             + N+PY ISSP+ FK++        A  M QKE   R+++QP  K Y RLSV  Q H
Sbjct:    9 KSLGQNFLQDENIIRKIVQLANIKKDDIVLEIGPGLGALTRYILKCSDNVNVVEFDASVIDTL---LQNCQKYGEPKVFNEDFLKFDLDIVRADSQQKLKLIGNLPYNISSPILFKVIEQSDKIIDAHFMLQKEVVERIISQPNSKTYGRLSVILQYH 163          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_BACHD (Ribosomal RNA small subunit methyltransferase A OS=Bacillus halodurans GN=rsmA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.760e-19
Identity = 61/165 (36.97%), Postives = 92/165 (55.76%), Query Frame = 1
Query:   67 SFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPY-----FD-----ICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHA 531
            +F KS GQ+ L +P ++ +IV  A +      +EIGPG G LT++L    K V+A E+D R++  L+      PY N + VI  DVLK D+       F+     + VAN+PY +++P+  KLL  +   R  ++M Q E A R+ A+PG K Y  LS+  Q +A
Sbjct:   21 TFKKSLGQNFLIDPNVLRNIVDVASLTPQSGAIEIGPGIGALTEQLARQAKRVVAFEIDQRLIPVLRETL--APYEN-VTVINEDVLKADVKQVIATTFEEGQDLMVVANLPYYVTTPILMKLLEAKLPVRGIVVMIQAEVADRIAAKPGTKEYGSLSIAAQYYA 182          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_SYNS9 (Ribosomal RNA small subunit methyltransferase A OS=Synechococcus sp. (strain CC9902) GN=rsmA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.298e-19
Identity = 62/166 (37.35%), Postives = 92/166 (55.42%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLL-EVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFD-----ICVANIPYQISSPLTFKLLFH-----QPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVS 540
            K  GQH L++  +++ IV+ A ++  D +LE+GPG G LT++LL      + A+ELD  +V  L  RF S    +R  + +GDVL+  L   D       VANIPY I+ PL  +L+       +P + C +++ QKE A R+ A+PG   +  LSV  QL A  S
Sbjct:   10 KRFGQHWLRDARVLDQIVEAARLQQDDCVLEVGPGRGALTERLLASPAAQIHAIELDRDLVRGLHDRFGS---ESRFSLREGDVLEAPLHLVDGGFANKVVANIPYNITGPLLARLIGRLDRPVEPTYDCLVLLLQKEVAERIRAKPGRSSFSALSVRMQLLADCS 172          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_RALEH (Ribosomal RNA small subunit methyltransferase A OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=rsmA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.298e-19
Identity = 62/163 (38.04%), Postives = 84/163 (51.53%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDI------CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546
            K  GQ+ L +  ++  IV     ++ DV++EIGPG G LT  LLE    +  VELD  +V  L+RR     Y  RL+V  GD L  D     +       V N+PY ISSPL F L+      R    M QKE   R+VA+PG K + RLS+  Q+   + H+
Sbjct:   13 KRFGQNFLVDDTIIHGIVNAISPQADDVLVEIGPGLGALTDPLLERIPQMQVVELDRDLVERLRRR-----YGERLQVHAGDALAFDFDKLAVPGRPLRIVGNLPYNISSPLLFHLMDFADHVRDQHFMLQKEVVERMVAEPGSKAFGRLSIMLQVRYYMEHV 170          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_PSEU2 (Ribosomal RNA small subunit methyltransferase A OS=Pseudomonas syringae pv. syringae (strain B728a) GN=rsmA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.298e-19
Identity = 63/163 (38.65%), Postives = 85/163 (52.15%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL------PYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546
            K  GQ+ L +  +++ I++    +  D +LEIGPG G LT+ LL+ G  +  VELD  ++  L  +F S P  N   + QGD LK D       P     V N+PY IS+PL F LL +    R    M QKE   R+ A PG   + RLS+  Q H RV HL
Sbjct:   11 KRFGQNFLHDAGVIDKILRAIRARPEDRLLEIGPGQGALTEGLLDSGAQLDVVELDKDLIPILNGQFASKPNFN---LHQGDALKFDFNTLGADPRSLRVVGNLPYNISTPLIFHLLQNASLIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHL 170          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_NOCFA (Ribosomal RNA small subunit methyltransferase A OS=Nocardia farcinica GN=rsmA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.298e-19
Identity = 56/147 (38.10%), Postives = 83/147 (56.46%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRF--QSTPYSNRLKVIQGDVLK---TDLPYFDIC-VANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLY 498
            K  GQ+ + +   V  IV  AG+   D +LE+GPG G+LT  LL+V   V+AVE+D  +   L R    ++   + RL+V++ D L+    DLP      VAN+PY ++ P+   LL   P  R A++M Q E A RL A+PG ++Y
Sbjct:   33 KQLGQNFVHDANTVRRIVTAAGVGRADTVLEVGPGLGSLTLALLDVVDSVVAVEIDPVLAEHLPRTVADRAPALAGRLRVVRDDALRVRAADLPASPTALVANLPYNVAVPVLLHLLAELPGLRTALVMVQAEVADRLAAEPGSRVY 179          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_GEOMG (Ribosomal RNA small subunit methyltransferase A OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rsmA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.298e-19
Identity = 62/169 (36.69%), Postives = 93/169 (55.03%), Query Frame = 1
Query:   64 ISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICV----------ANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVS 540
            I   K+ GQ+ L +  ++  I     ++  D ILE+GPG G LT+ L      ++AVELD+R+V  L++ F+  P   R++++ GD+L+ DL   D+            AN+PY IS+P+ F  L ++  F   ++M QKE   RL A PG K Y  LSV  QLH  V+
Sbjct:    6 IRARKALGQNFLVDRHVLARIADIVDMRPDDRILEVGPGKGALTEMLAHRCARLVAVELDTRLVPVLRQAFRDNP---RVEIVHGDILEIDLR--DLLAYEGGERWKVAANLPYNISTPVLFAFLDNRDLFSRLVLMLQKEVGDRLAASPGTKDYGILSVFFQLHFDVT 169          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_CORDI (Ribosomal RNA small subunit methyltransferase A OS=Corynebacterium diphtheriae GN=rsmA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.298e-19
Identity = 58/159 (36.48%), Postives = 86/159 (54.09%), Query Frame = 1
Query:   76 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMV--LELQRRFQSTPYSNRLKVIQGDVLKT---DLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARV 537
            K  GQ+ + +P  V  IV  A + S D ++E+GPG G+LT  LL+  + V AVE+D R+   L L    ++  +++RL +I  D L     D+ +    VAN+PY +S P+   LL   P  R  ++M Q E A RL A PG+K+Y   SV    +  V
Sbjct:   28 KKLGQNFVHDPNTVRMIVSAADLNSDDHVIEVGPGLGSLTLALLDTAQKVTAVEIDPRLAQQLPLTVAERAGQFADRLNLIHKDALTVAPDDIDHPTALVANLPYNVSVPVLLHLLQIFPTIRRVLVMVQAEVADRLAADPGNKVYGVPSVKASFYGNV 186          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_ANOFW (Ribosomal RNA small subunit methyltransferase A OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=rsmA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.298e-19
Identity = 59/164 (35.98%), Postives = 92/164 (56.10%), Query Frame = 1
Query:   67 SFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL------PYFDI----CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLH 528
            SF KS GQ+ L  P ++  IV  A +     ++EIGPG G LT++L    K V+A E+D R++  L      +PY+N + +I  D+LK D+       + D+     VAN+PY +++P+  KLL  +   R  ++M QKE A R+ A+PG K Y  L++  Q +
Sbjct:   21 SFKKSLGQNFLIEPNILHRIVDFAQLSERTGVIEIGPGIGALTEQLARRAKKVVAFEIDQRLLPILADTL--SPYTN-VSIIHEDILKADVQQVIAEQFTDVDDIMVVANLPYYVTTPIIMKLLTDRLPIRGMVVMLQKEVADRMAAKPGTKDYGSLTIAVQYY 181          
BLAST of DN617688 vs. ExPASy Swiss-Prot
Match: RSMA_THEMA (Ribosomal RNA small subunit methyltransferase A OS=Thermotoga maritima GN=rsmA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.001e-19
Identity = 61/162 (37.65%), Postives = 89/162 (54.94%), Query Frame = 1
Query:   64 ISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEVGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKT-DLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 546
            +   K  GQ  L +  + + IV+ A +   DV++EIG G G LT++L + G  VIA E+D  +   LQ R    P    +++   D LK  ++P   ICV+NIPY I+ PL  K++  +  F+ AI+M QKE   R++A+PG K Y  LSV  Q    V  L
Sbjct:   31 VRLKKHLGQVFLSDDRIAKRIVKAAELTPEDVVVEIGAGAGTLTEELAKTGARVIAYEIDESLAPILQERLSKYP---NVELRFEDFLKAKNVPEGAICVSNIPYNITGPLMEKII--EWKFKRAIVMIQKEVGERILAKPGKKTYGYLSVVVQTFYEVKKL 187          
The following BLAST results are available for this feature:
BLAST of DN617688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RSMA_FRAP21.760e-1937.97Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_BACHD1.760e-1936.97Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_SYNS92.298e-1937.35Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_RALEH2.298e-1938.04Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_PSEU22.298e-1938.65Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_NOCFA2.298e-1938.10Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_GEOMG2.298e-1936.69Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_CORDI2.298e-1936.48Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_ANOFW2.298e-1935.98Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_THEMA3.001e-1937.65Ribosomal RNA small subunit methyltransferase A OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I22_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617688 ID=DN617688; Name=DN617688; organism=Citrus sinensis; type=EST; length=548bp
AGGAAGGAGAAAGGAAAGCAGAAAAGTGGACCGTATCAAGGACAAGGACT
AGGAGCAGGAGGTATATCCTTCCACAAATCAAAGGGGCAGCACATTCTGA
AGAACCCTTTGCTTGTGGAGAGCATCGTCCAAAAAGCCGGCATCAAGAGC
ACCGATGTCATTCTTGAGATTGGTCCCGGCACTGGTAATCTCACCAAAAA
GCTTCTGGAAGTTGGCAAGATGGTCATCGCTGTCGAGCTTGACTCTCGTA
TGGTTCTCGAGCTCCAGCGCCGTTTTCAATCCACCCCTTACTCCAACCGT
TTAAAGGTCATTCAGGGTGATGTCCTCAAGACTGATCTTCCCTATTTTGA
TATATGTGTGGCAAACATCCCGTACCAAATCTCCTCCCCACTCACATTCA
AGTTGTTGTTTCACCAACCTGCCTTCAGATGCGCGATTATTATGTTCCAG
AAAGAATTTGCTATGAGACTTGTTGCTCAACCCGGTGACAAGCTCTACTG
TCGTCTTTCTGTGAATACACAACTTCATGCTCGGGTCTCCCACCTCCT
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