DN617687

Overview
NameDN617687
Unique NameDN617687
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10529 contig Csv1_Contig10529:599..1302. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSJ (Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.991e-36
Identity = 71/99 (71.72%), Postives = 80/99 (80.81%), Query Frame = -1
Query:  408 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSG 704
            RRVPC K+GG+RFT+NG  YFNLVLVTNVAGAGD+  VS+KG+ T W  MSRNWGQNWQSN+ L GQ+LSF+VT SD RT TS NVA   WQFGQTF G
Sbjct:  145 RRVPCVKKGGVRFTVNGHSYFNLVLVTNVAGAGDVRSVSIKGSRTGWQPMSRNWGQNWQSNAFLDGQSLSFQVTASDGRTVTSNNVAHPGWQFGQTFEG 243          
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSI (Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.991e-36
Identity = 71/99 (71.72%), Postives = 80/99 (80.81%), Query Frame = -1
Query:  408 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSG 704
            RRVPC K+GG+RFT+NG  YFNLVLVTNVAGAGD+  VS+KG+ T W  MSRNWGQNWQSN+ L GQ+LSF+VT SD RT TS NVA   WQFGQTF G
Sbjct:  145 RRVPCVKKGGVRFTVNGHSYFNLVLVTNVAGAGDVRSVSIKGSRTGWQPMSRNWGQNWQSNAFLDGQSLSFQVTASDGRTVTSNNVAHPGWQFGQTFEG 243          
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXPA5_ARATH (Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.458e-35
Identity = 69/99 (69.70%), Postives = 80/99 (80.81%), Query Frame = -1
Query:  408 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSG 704
            RRV C++ GGIRFTING  YFNLVLVTNV GAGD+  VS+KG+ T+W  MSRNWGQNWQSNS L GQ+LSF VT SDRR+  S+NVAP  W FGQT++G
Sbjct:  152 RRVRCKRSGGIRFTINGHSYFNLVLVTNVGGAGDVHSVSMKGSRTKWQLMSRNWGQNWQSNSYLNGQSLSFVVTTSDRRSVVSFNVAPPTWSFGQTYTG 250          
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXPA8_ARATH (Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.443e-34
Identity = 69/100 (69.00%), Postives = 82/100 (82.00%), Query Frame = -1
Query:  408 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQ-WLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSG 704
            RRVPC K+GGIRFTING  YFNLVL++NV GAGD+  VS+KG+ TQ W +MSRNWGQNWQSNS +  Q+LSF+VT SD RT  S +VAP+NWQFGQT+ G
Sbjct:  151 RRVPCMKKGGIRFTINGHSYFNLVLISNVGGAGDVHAVSIKGSKTQSWQAMSRNWGQNWQSNSYMNDQSLSFQVTTSDGRTLVSNDVAPSNWQFGQTYQG 250          
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXPA2_ARATH (Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.884e-34
Identity = 71/100 (71.00%), Postives = 81/100 (81.00%), Query Frame = -1
Query:  408 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANT-QWLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSG 704
            RRVPC K GGIRFTING  YF+LVL+TNV GAGDI  VS+KG+ T QW SMSRNWGQNWQSN+ L GQ+LSF+VT SD RT  S++V P +WQFGQTF G
Sbjct:  153 RRVPCEKGGGIRFTINGNPYFDLVLITNVGGAGDIRAVSLKGSKTDQWQSMSRNWGQNWQSNTYLRGQSLSFQVTDSDGRTVVSYDVVPHDWQFGQTFEG 252          
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXPA1_ARATH (Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.214e-34
Identity = 69/99 (69.70%), Postives = 78/99 (78.79%), Query Frame = -1
Query:  408 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSG 704
            RRVPC +RGGIRFTING  YFNLVL+TNV GAGD+    VKG+ T W +MSRNWGQNWQSNS L GQ+LSF+VT SD +T  S NVA A W FGQTF+G
Sbjct:  148 RRVPCVRRGGIRFTINGHSYFNLVLITNVGGAGDVHSAMVKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGQTIVSNNVANAGWSFGQTFTG 246          
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXP11_ORYSJ (Expansin-A11 OS=Oryza sativa subsp. japonica GN=EXPA11 PE=2 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.221e-33
Identity = 68/99 (68.69%), Postives = 76/99 (76.77%), Query Frame = -1
Query:  408 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSG 704
            RRV C K+GGIRFTI G  YFNLVLVTNV GAGD+  VSVKG+ + W +MS NWG NWQ+ + L GQ LSFRVT SD RT TS NVAP+ W FGQTFSG
Sbjct:  147 RRVACAKQGGIRFTITGHSYFNLVLVTNVGGAGDVTAVSVKGSRSGWQAMSHNWGANWQNGANLDGQPLSFRVTASDGRTVTSDNVAPSGWSFGQTFSG 245          
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXP21_ORYSJ (Expansin-A21 OS=Oryza sativa subsp. japonica GN=EXPA21 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.764e-32
Identity = 66/103 (64.08%), Postives = 80/103 (77.67%), Query Frame = -1
Query:  405 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVK---GANTQWLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGK 704
            RRV CR++GG+RFTING  YFNLVLV+NV GAGD+  V+VK   G   +W +M+RNWGQNWQS + L GQALSF VT  DRR+  S+NVAPA W FGQTF+G+
Sbjct:  159 RRVACRRKGGMRFTINGHSYFNLVLVSNVGGAGDVHAVAVKAGGGRKARWQAMARNWGQNWQSGALLDGQALSFTVTTGDRRSVVSYNVAPAGWAFGQTFTGR 261          
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXPA6_ORYSJ (Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXPA6 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.131e-32
Identity = 65/106 (61.32%), Postives = 80/106 (75.47%), Query Frame = -1
Query:  405 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANT------QWLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGK 704
            RRV C ++GG+RFT+NG  YFNLVLVTNV GAGD+  ++VKG+ +      +W  MSRNWGQNWQSN+ L G+ALSFRVT  D R+ T  +VAPA WQFGQTF G+
Sbjct:  152 RRVACARKGGVRFTVNGHAYFNLVLVTNVGGAGDVRSLAVKGSGSGSRVGGRWQPMSRNWGQNWQSNAYLDGKALSFRVTAGDGRSLTCADVAPAGWQFGQTFEGR 257          
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXPA1_ORYSJ (Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 5.131e-32
Identity = 64/98 (65.31%), Postives = 77/98 (78.57%), Query Frame = -1
Query:  411 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFS 704
            +RVPC K+GG+RFTING  YF LVLV+NV G G I  VS+KG+ T W++MSRNWG NWQSN+ L GQ+LSF+VT SD +T T  +VAPA W FGQTFS
Sbjct:  158 QRVPCAKQGGVRFTINGRDYFELVLVSNVGGVGSIQSVSIKGSRTGWMAMSRNWGVNWQSNAYLDGQSLSFKVTSSDGQTLTFLDVAPAGWTFGQTFS 255          
The following BLAST results are available for this feature:
BLAST of DN617687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
EXPA4_ORYSJ9.991e-3671.72Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA4_ORYSI9.991e-3671.72Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4... [more]
EXPA5_ARATH8.458e-3569.70Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 ... [more]
EXPA8_ARATH1.443e-3469.00Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 ... [more]
EXPA2_ARATH1.884e-3471.00Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 ... [more]
EXPA1_ARATH3.214e-3469.70Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 ... [more]
EXP11_ORYSJ1.221e-3368.69Expansin-A11 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP21_ORYSJ1.764e-3264.08Expansin-A21 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA6_ORYSJ5.131e-3261.32Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA1_ORYSJ5.131e-3265.31Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXP... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I21_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617687 ID=DN617687; Name=DN617687; organism=Citrus sinensis; type=EST; length=704bp
GTAAATCATATCAGCTGCGGGCTACATGTTTTTTTAGTTTGTTCCTGCAG
CCACTTCAGCCACTACACTTTCACCCACGAGACTGGTTTTTAACTATTAC
CACCAGCCCCGGTAAACAAGTCAAACAAAACAAAAACAGTAAAAACTGAA
AATAAACAGAAGTTACCCCACCCACACACACTACATACTTTTAGTCACTT
TTTTCTACTACCTATCACACCATCATTTTGATCTTTTTGATTTTGACCCA
CTTTTACTTTAAAAACCCCTAACACGACCCCCCATAACCCCCTGTTCCTT
CGCTTCAATTTTTTTTCCGGGAAAATAATGGAGAAAAAATCTTGGAAGGC
GGGAAACATGAAAATGTTGAAAAAGAAAATTAAAATTCACTAGACGCGGA
AATTCTTTCCCGAAAAGGTTTGACCGAACTGCCAATTCGCTGGCGCCACG
TTCCAAGAGGTTGAGGTTCTTCTGTCACTGCCCGTAACTCTAAACGAAAG
TGCCTGGCCCACGAGCTGAGAGTTGGATTGCCAGTTTTGCCCCCAGTTGC
GGCTCATGCTCAGCCATTGGGTGTTGGCCCCTTTCACGCTCACGCGCACG
ATATCCCCTGCGCCCGCGACGTTGGTGACCAAGACCAAGTTGAAGTAACG
GAAACCGTTAATTGTGAATCTGATTCCGCCTCGCTTTCTGCAGGGCACCC
TGCG
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