DN617687

Overview
NameDN617687
Unique NameDN617687
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10529 contig Csv1_Contig10529:599..1302. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXP13_ARATH (Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 5.673e-31
Identity = 61/100 (61.00%), Postives = 73/100 (73.00%), Query Frame = -1
Query:  405 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGK 704
            RR+ CRK G +RFT++G   F  VL+TNVAG+GDI  V +KG+ T WL M RNWGQNW  N+ L  QALSF VT SDR T TS+NV+P NW +GQTF GK
Sbjct:  162 RRINCRKEGSMRFTVDGGGIFISVLITNVAGSGDIAAVKIKGSRTGWLPMGRNWGQNWHINADLRNQALSFEVTSSDRSTVTSYNVSPKNWNYGQTFEGK 261          
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXPA3_ORYSJ (Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXPA3 PE=2 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 7.409e-31
Identity = 59/98 (60.20%), Postives = 76/98 (77.55%), Query Frame = -1
Query:  411 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFS 704
            +RVPC++ GGIRF I+G  YF LV VTNV G+G + ++S+KG+NT W++MSRNWG NWQSN+ L GQ+LSF V   D R  T+WNVAP+NW FG T+S
Sbjct:  152 KRVPCQRSGGIRFAISGHDYFELVTVTNVGGSGVVAQMSIKGSNTGWMAMSRNWGANWQSNAYLAGQSLSFIVQLDDGRKVTAWNVAPSNWFFGATYS 249          
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXPA9_ORYSJ (Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXPA9 PE=2 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.264e-30
Identity = 61/96 (63.54%), Postives = 73/96 (76.04%), Query Frame = -1
Query:  414 RVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTF 701
            R PCR+ GGIRF I G  Y+ LVLVTNVAG+G +    VKG+ T+WLSMSRNWG+NWQSN+ L GQALSFRV   D    T+++VAPANWQFG T+
Sbjct:  151 RTPCRRVGGIRFGIAGHDYYELVLVTNVAGSGAVAAAWVKGSGTEWLSMSRNWGENWQSNAYLTGQALSFRVQADDGGVVTAYDVAPANWQFGSTY 246          
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXPA5_ORYSJ (Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.816e-30
Identity = 65/100 (65.00%), Postives = 74/100 (74.00%), Query Frame = -1
Query:  408 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQ-WLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSG 704
            RRV C+K+GGIRFTING  YFNLVLVTNV GAGD+  V+VK   +  W ++SRNWGQNWQS + L GQALSFRVT  D R+  S N  P  W FGQTFSG
Sbjct:  188 RRVACQKKGGIRFTINGHSYFNLVLVTNVGGAGDVHAVAVKSERSAAWQALSRNWGQNWQSAALLDGQALSFRVTTGDGRSVVSNNAVPRGWSFGQTFSG 287          
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXP33_ORYSJ (Expansin-A33 OS=Oryza sativa subsp. japonica GN=EXPA33 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.816e-30
Identity = 58/98 (59.18%), Postives = 75/98 (76.53%), Query Frame = -1
Query:  411 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFS 704
            +RVPC+K GGIRFTI+G  YF LV V NV G+G + +VS+KG+ T W++MSRNWGQNWQSN+ L  Q+LSF+V   D R  T WN+AP+NW FG T++
Sbjct:  146 KRVPCQKSGGIRFTISGRDYFELVTVFNVGGSGVVAQVSIKGSKTDWMAMSRNWGQNWQSNAYLNTQSLSFKVKLDDAREVTVWNIAPSNWNFGTTYT 243          
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXPA8_ORYSJ (Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.677e-30
Identity = 58/98 (59.18%), Postives = 75/98 (76.53%), Query Frame = -1
Query:  411 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFS 704
            RRVPC++ GGIRF +NG  YF LVLVTNV G+G + ++ +KG+ T W++MSRNWG NWQSN++L GQALSFRV   D R  T+ +VAPA W FG T++
Sbjct:  148 RRVPCQRSGGIRFAVNGHSYFELVLVTNVGGSGAVAQMWIKGSGTGWMAMSRNWGANWQSNARLDGQALSFRVQADDGRVVTAADVAPAGWSFGATYT 245          
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXP22_ARATH (Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.635e-28
Identity = 57/100 (57.00%), Postives = 68/100 (68.00%), Query Frame = -1
Query:  405 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGK 704
            RR+PC K GG++F   G  YF +VL+ NV GAGDI  V VKG  T W++M +NWGQNW + + L GQ LSFRVT SD  T   WNV P NW FGQTF G+
Sbjct:  171 RRIPCSKTGGVKFETKGNPYFLMVLIYNVGGAGDIKYVQVKGNKTGWITMKKNWGQNWTTITVLTGQGLSFRVTTSDGITKDFWNVMPKNWGFGQTFDGR 270          
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXP14_ORYSJ (Expansin-A14 OS=Oryza sativa subsp. japonica GN=EXPA14 PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 3.442e-28
Identity = 59/101 (58.42%), Postives = 71/101 (70.30%), Query Frame = -1
Query:  405 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGAN-TQWLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGK 704
            +RVPC K+GG+RFTING  YFNLVLVTNVA  G I  + + G+N T W+ M RNWG NW S S L GQ LSFRVT  D +T    N+ P+ W+FGQTF+ K
Sbjct:  158 QRVPCIKKGGVRFTINGHDYFNLVLVTNVATTGSIKSMDIMGSNSTDWMPMVRNWGANWHSLSYLTGQTLSFRVTNMDGQTLVFKNIVPSGWKFGQTFTSK 258          
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXP12_ORYSJ (Expansin-A12 OS=Oryza sativa subsp. japonica GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.442e-28
Identity = 56/98 (57.14%), Postives = 72/98 (73.47%), Query Frame = -1
Query:  411 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFS 704
            +RV C ++GG+RFTING  YF LVL+TNV G G I  V +KG  T W++MSRNWG NWQ+N+ L  QA+SF VT +  +T    +VAP+NWQFGQTF+
Sbjct:  147 QRVSCTRKGGVRFTINGNSYFELVLITNVGGPGSIKSVQIKGTKTGWVTMSRNWGANWQANNYLNNQAISFSVTSTAGKTLVFEDVAPSNWQFGQTFT 244          
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXP24_ORYSJ (Expansin-A24 OS=Oryza sativa subsp. japonica GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 4.495e-28
Identity = 59/101 (58.42%), Postives = 71/101 (70.30%), Query Frame = -1
Query:  405 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGAN-TQWLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGK 704
            +RVPC K+GG+RFTING  YFNLVLVTNVA  G I  + + G+N T W+ M RNWG NW S S L GQ LSFRVT  D +T    N+ P+ W+FGQTF+ K
Sbjct:  174 QRVPCVKKGGVRFTINGHDYFNLVLVTNVATTGSIKSMDIMGSNSTDWMPMVRNWGANWHSLSYLTGQMLSFRVTNMDGQTLVFRNIVPSGWKFGQTFASK 274          
The following BLAST results are available for this feature:
BLAST of DN617687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
EXP13_ARATH5.673e-3161.00Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=... [more]
EXPA3_ORYSJ7.409e-3160.20Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA9_ORYSJ1.264e-3063.54Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA5_ORYSJ2.816e-3065.00Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP33_ORYSJ2.816e-3059.18Expansin-A33 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA8_ORYSJ3.677e-3059.18Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP22_ARATH2.635e-2857.00Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=... [more]
EXP14_ORYSJ3.442e-2858.42Expansin-A14 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP12_ORYSJ3.442e-2857.14Expansin-A12 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP24_ORYSJ4.495e-2858.42Expansin-A24 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I21_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617687 ID=DN617687; Name=DN617687; organism=Citrus sinensis; type=EST; length=704bp
GTAAATCATATCAGCTGCGGGCTACATGTTTTTTTAGTTTGTTCCTGCAG
CCACTTCAGCCACTACACTTTCACCCACGAGACTGGTTTTTAACTATTAC
CACCAGCCCCGGTAAACAAGTCAAACAAAACAAAAACAGTAAAAACTGAA
AATAAACAGAAGTTACCCCACCCACACACACTACATACTTTTAGTCACTT
TTTTCTACTACCTATCACACCATCATTTTGATCTTTTTGATTTTGACCCA
CTTTTACTTTAAAAACCCCTAACACGACCCCCCATAACCCCCTGTTCCTT
CGCTTCAATTTTTTTTCCGGGAAAATAATGGAGAAAAAATCTTGGAAGGC
GGGAAACATGAAAATGTTGAAAAAGAAAATTAAAATTCACTAGACGCGGA
AATTCTTTCCCGAAAAGGTTTGACCGAACTGCCAATTCGCTGGCGCCACG
TTCCAAGAGGTTGAGGTTCTTCTGTCACTGCCCGTAACTCTAAACGAAAG
TGCCTGGCCCACGAGCTGAGAGTTGGATTGCCAGTTTTGCCCCCAGTTGC
GGCTCATGCTCAGCCATTGGGTGTTGGCCCCTTTCACGCTCACGCGCACG
ATATCCCCTGCGCCCGCGACGTTGGTGACCAAGACCAAGTTGAAGTAACG
GAAACCGTTAATTGTGAATCTGATTCCGCCTCGCTTTCTGCAGGGCACCC
TGCG
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