DN617687

Overview
NameDN617687
Unique NameDN617687
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10529 contig Csv1_Contig10529:599..1302. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXP22_ORYSJ (Expansin-A22 OS=Oryza sativa subsp. japonica GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 5.871e-28
Identity = 61/101 (60.40%), Postives = 71/101 (70.30%), Query Frame = -1
Query:  405 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGAN-TQWLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGK 704
            +RVPC K+GG+RFTING  YFNLVLVTNVA  G I  + V G+N T WL M RNWG NW S S L GQ LSFRVT  D +T    N+ P+ W+FGQTF+ K
Sbjct:  176 QRVPCVKKGGVRFTINGHDYFNLVLVTNVATTGLIKSMDVMGSNSTDWLPMVRNWGANWHSLSYLTGQMLSFRVTNMDGQTLVFRNIVPSGWKFGQTFASK 276          
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXP26_ARATH (Putative expansin-A26 OS=Arabidopsis thaliana GN=EXPA26 PE=3 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 7.667e-28
Identity = 56/100 (56.00%), Postives = 68/100 (68.00%), Query Frame = -1
Query:  405 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGK 704
            RR+PC K GG++F   G  YF +VL+ NV GAGDI  V VK   T W++M +NWGQNW +++ L GQ LSFRVT +D  T   WNV P NW FGQTF GK
Sbjct:  177 RRIPCSKTGGVKFETKGNPYFLMVLIYNVGGAGDIKYVQVKENKTGWITMKKNWGQNWTTSTVLTGQGLSFRVTTTDGITKDFWNVMPKNWGFGQTFDGK 276          
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXP27_ORYSJ (Putative expansin-A27 OS=Oryza sativa subsp. japonica GN=EXPA27 PE=3 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.001e-27
Identity = 59/98 (60.20%), Postives = 71/98 (72.45%), Query Frame = -1
Query:  411 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFS 704
            RRV C +RGG+RFT+ GF +F LVLV NVAG+G +  VSV+GA T WL MSRNWG NWQS + L GQ LSF VT +  +     +VAPA W+FGQTFS
Sbjct:  151 RRVRCWRRGGVRFTVGGFDHFELVLVANVAGSGSVAAVSVRGAGTGWLQMSRNWGANWQSLAGLAGQPLSFGVTTTGGQYILFQDVAPAGWKFGQTFS 248          
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXP23_ORYSJ (Expansin-A23 OS=Oryza sativa subsp. japonica GN=EXPA23.1 PE=2 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.001e-27
Identity = 59/101 (58.42%), Postives = 71/101 (70.30%), Query Frame = -1
Query:  405 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANT-QWLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGK 704
            +RVPC K+GG+RFTING  YF LVLVTNVA AG I  + V G+NT  W+ M+RNWG  W S + L GQ LSFRVT +D +T    NV P  W+FGQTF+ K
Sbjct:  163 QRVPCVKKGGLRFTINGHDYFQLVLVTNVAAAGSIKSMEVMGSNTADWMPMARNWGAQWHSLAYLTGQGLSFRVTNTDDQTLVFTNVVPPGWKFGQTFASK 263          
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXP11_ARATH (Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.308e-27
Identity = 57/98 (58.16%), Postives = 70/98 (71.43%), Query Frame = -1
Query:  411 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFS 704
            +RV C K+GG+RF ING  YF LV + NV GAG I  VS+KG+ T WL+MSRNWG NWQSN+ L GQALSF +T +D  T    NV P++W FGQ +S
Sbjct:  150 QRVSCYKKGGVRFRINGRDYFELVNIQNVGGAGSIKSVSIKGSKTGWLAMSRNWGANWQSNAYLDGQALSFSITTTDGATRVFLNVVPSSWSFGQIYS 247          
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXP28_ORYSJ (Expansin-A28 OS=Oryza sativa subsp. japonica GN=EXPA28 PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.231e-27
Identity = 54/98 (55.10%), Postives = 74/98 (75.51%), Query Frame = -1
Query:  411 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFS 704
            ++V C ++GG+RFT++GF YF LVL+TNVAG+G +  +SVKG+ T W+ ++RNWG NWQ NS LVGQALSFRVT +  +T    +V P  W+FG TF+
Sbjct:  151 QQVKCWRQGGVRFTVSGFNYFELVLITNVAGSGSVQAMSVKGSKTGWIPLARNWGANWQCNSALVGQALSFRVTSTGGQTLQINSVVPEWWEFGTTFT 248          
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXP25_ORYSJ (Expansin-A25 OS=Oryza sativa subsp. japonica GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 2.914e-27
Identity = 55/98 (56.12%), Postives = 74/98 (75.51%), Query Frame = -1
Query:  411 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFS 704
            ++V C ++GGIRFT+ GF +F LVLV+NVAG+G +  VSVKG +T W++++RNWG NWQ NS LVGQALSF VT +  +T   +NV P+ W FG TF+
Sbjct:  151 QQVKCWRQGGIRFTMGGFNFFELVLVSNVAGSGSVRSVSVKGGSTGWITLNRNWGANWQCNSGLVGQALSFAVTSTGGQTLYIYNVVPSWWSFGMTFT 248          
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXP32_ORYSJ (Expansin-A32 OS=Oryza sativa subsp. japonica GN=EXPA32 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.805e-27
Identity = 55/98 (56.12%), Postives = 71/98 (72.45%), Query Frame = -1
Query:  414 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKG-ANTQWLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTF 704
            RRVPC K GGIR+TI G  YFNLV+V+NV GAGD+  +SVKG    +W  + RNWGQ WQ++  L G++L+FRV   D R +TSW+V P +WQFG T+
Sbjct:  165 RRVPCVKVGGIRYTITGNPYFNLVMVSNVGGAGDVAGLSVKGNKRVKWTPLKRNWGQEWQTSEVLTGESLTFRVMTGDHRKATSWHVLPPDWQFGVTY 262          
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXP15_ORYSJ (Expansin-A15 OS=Oryza sativa subsp. japonica GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.805e-27
Identity = 56/98 (57.14%), Postives = 73/98 (74.49%), Query Frame = -1
Query:  411 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFS 704
            +RVPC K+GG+RFT+ GF YF LVL++NVAG+G I  V VKG NT  + +SRNWG NWQS++ LVGQ L+F VT +  +T    N+ PA W+FGQ+FS
Sbjct:  156 QRVPCVKQGGVRFTMGGFNYFELVLISNVAGSGSIQSVWVKGPNTDRMPLSRNWGANWQSHAGLVGQTLTFGVTSTGGQTLVFQNIVPAWWKFGQSFS 253          
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXP19_ORYSJ (Expansin-A19 OS=Oryza sativa subsp. japonica GN=EXPA19 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.491e-27
Identity = 56/98 (57.14%), Postives = 70/98 (71.43%), Query Frame = -1
Query:  411 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFS 704
            ++V C + GG+RFTINGF YF LVLVTN+AG+G I  +SVKG+ T W+ M+RNWG NWQ  + L GQALSF VT +  +T    +  PA W FGQTFS
Sbjct:  145 QQVKCWRYGGVRFTINGFNYFELVLVTNMAGSGSIASMSVKGSCTGWIQMTRNWGANWQCLAGLAGQALSFNVTSTGGQTIVFDDAVPAGWSFGQTFS 242          
The following BLAST results are available for this feature:
BLAST of DN617687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
EXP22_ORYSJ5.871e-2860.40Expansin-A22 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP26_ARATH7.667e-2856.00Putative expansin-A26 OS=Arabidopsis thaliana GN=E... [more]
EXP27_ORYSJ1.001e-2760.20Putative expansin-A27 OS=Oryza sativa subsp. japon... [more]
EXP23_ORYSJ1.001e-2758.42Expansin-A23 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP11_ARATH1.308e-2758.16Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=... [more]
EXP28_ORYSJ2.231e-2755.10Expansin-A28 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP25_ORYSJ2.914e-2756.12Expansin-A25 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP32_ORYSJ3.805e-2756.12Expansin-A32 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP15_ORYSJ3.805e-2757.14Expansin-A15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP19_ORYSJ6.491e-2757.14Expansin-A19 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I21_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617687 ID=DN617687; Name=DN617687; organism=Citrus sinensis; type=EST; length=704bp
GTAAATCATATCAGCTGCGGGCTACATGTTTTTTTAGTTTGTTCCTGCAG
CCACTTCAGCCACTACACTTTCACCCACGAGACTGGTTTTTAACTATTAC
CACCAGCCCCGGTAAACAAGTCAAACAAAACAAAAACAGTAAAAACTGAA
AATAAACAGAAGTTACCCCACCCACACACACTACATACTTTTAGTCACTT
TTTTCTACTACCTATCACACCATCATTTTGATCTTTTTGATTTTGACCCA
CTTTTACTTTAAAAACCCCTAACACGACCCCCCATAACCCCCTGTTCCTT
CGCTTCAATTTTTTTTCCGGGAAAATAATGGAGAAAAAATCTTGGAAGGC
GGGAAACATGAAAATGTTGAAAAAGAAAATTAAAATTCACTAGACGCGGA
AATTCTTTCCCGAAAAGGTTTGACCGAACTGCCAATTCGCTGGCGCCACG
TTCCAAGAGGTTGAGGTTCTTCTGTCACTGCCCGTAACTCTAAACGAAAG
TGCCTGGCCCACGAGCTGAGAGTTGGATTGCCAGTTTTGCCCCCAGTTGC
GGCTCATGCTCAGCCATTGGGTGTTGGCCCCTTTCACGCTCACGCGCACG
ATATCCCCTGCGCCCGCGACGTTGGTGACCAAGACCAAGTTGAAGTAACG
GAAACCGTTAATTGTGAATCTGATTCCGCCTCGCTTTCTGCAGGGCACCC
TGCG
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