DN617687

Overview
NameDN617687
Unique NameDN617687
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10529 contig Csv1_Contig10529:599..1302. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXP31_ORYSJ (Expansin-A31 OS=Oryza sativa subsp. japonica GN=EXPA31 PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 8.477e-27
Identity = 56/98 (57.14%), Postives = 70/98 (71.43%), Query Frame = -1
Query:  411 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFS 704
            +RV C ++GG+RFT+ G  YF LVL+TNVAG+G +    +KG NT W+ MSRNWG NWQS + L GQALSF VT +  +     +VAPA WQFGQTFS
Sbjct:  152 QRVRCWRQGGVRFTVAGLNYFELVLITNVAGSGSVASAWIKGTNTGWIQMSRNWGANWQSLAGLAGQALSFAVTTTGGQYLQFQDVAPAWWQFGQTFS 249          
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXP18_ORYSJ (Expansin-A18 OS=Oryza sativa subsp. japonica GN=EXPA18 PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 8.477e-27
Identity = 56/98 (57.14%), Postives = 70/98 (71.43%), Query Frame = -1
Query:  411 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFS 704
            ++V C + GG+RFTI G  YF LVLVTN+AG+G I  +SVKG++T W+ MSRNWG NWQ  + L GQALSF VT +  +T    +V PA W FGQTFS
Sbjct:  145 QQVKCWRSGGVRFTITGLNYFELVLVTNMAGSGSIASMSVKGSSTGWIQMSRNWGANWQCLAGLAGQALSFTVTSTGGQTIVFDSVVPAGWSFGQTFS 242          
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXP29_ORYSJ (Expansin-A29 OS=Oryza sativa subsp. japonica GN=EXPA29 PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.107e-26
Identity = 57/100 (57.00%), Postives = 72/100 (72.00%), Query Frame = -1
Query:  411 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGAN--TQWLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFS 704
            RRVPCR+RGG+RFT+ G  YF LVLVTNVA AG +  + V+G+     W++MSRNWG NWQS + L GQ LSFRVT +D +T     V P +W+FGQTF+
Sbjct:  158 RRVPCRRRGGVRFTVAGRDYFELVLVTNVAAAGSVRSMEVRGSRRGAGWMAMSRNWGANWQSLAYLDGQGLSFRVTATDGQTIVFAGVVPPSWRFGQTFA 257          
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.107e-26
Identity = 56/98 (57.14%), Postives = 70/98 (71.43%), Query Frame = -1
Query:  411 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFS 704
            ++V C + GG+RF INGF YF LVLVTN+AG+G IV +SVKG+ T W+ M+RNWG NWQ  + L GQALSF VT +  +T    +  PA W FGQTFS
Sbjct:  136 QQVKCWRYGGVRFIINGFNYFELVLVTNMAGSGSIVSMSVKGSCTGWIQMTRNWGANWQCLAGLAGQALSFNVTSTGGQTIVFDDAVPAGWSFGQTFS 233          
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXP16_ORYSJ (Expansin-A16 OS=Oryza sativa subsp. japonica GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.221e-26
Identity = 55/100 (55.00%), Postives = 68/100 (68.00%), Query Frame = -1
Query:  405 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGK 704
            RRV C + GG+RFTI G   F  VL+TNVA  G++  V VKG+ T W+ M RNWGQNWQ ++ L GQ LSF VTG   RT  +++VAP +W F QTF GK
Sbjct:  157 RRVSCDRAGGMRFTITGGASFLQVLITNVAADGEVAAVKVKGSRTGWIPMGRNWGQNWQCDADLRGQPLSFEVTGGRGRTVVAYSVAPPDWMFAQTFEGK 256          
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXP12_ARATH (Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.495e-26
Identity = 53/101 (52.48%), Postives = 74/101 (73.27%), Query Frame = -1
Query:  405 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQ-WLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGK 704
            RRV C++RGG+RFT+ G   FN+V+++NV G G +  V+V+G+  + WL M+RNWG NWQS+  L GQ LSF+VT +D +T T  NV P++W FGQTFS +
Sbjct:  147 RRVGCKRRGGVRFTMRGQGNFNMVMISNVGGGGSVRSVAVRGSKGKTWLQMTRNWGANWQSSGDLRGQRLSFKVTLTDSKTQTFLNVVPSSWWFGQTFSSR 247          
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXP10_ORYSJ (Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 5.495e-26
Identity = 52/100 (52.00%), Postives = 68/100 (68.00%), Query Frame = -1
Query:  405 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGK 704
            RRV C + GG+RF + G  +F  VL++NV GAGD+  V +KG  + WLSM RNWGQ W  NS   GQ LSF +T SD +T T++NV P  W FG+T++GK
Sbjct:  154 RRVNCLRDGGVRFAVAGRSFFLTVLISNVGGAGDVRSVKIKGTESGWLSMGRNWGQIWHINSDFRGQPLSFELTSSDGKTLTNYNVVPKEWDFGKTYTGK 253          
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXP17_ARATH (Putative expansin-A17 OS=Arabidopsis thaliana GN=EXPA17 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.224e-25
Identity = 54/98 (55.10%), Postives = 75/98 (76.53%), Query Frame = -1
Query:  414 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANT-QWLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTF 704
            ++V CR+ GG+RFTING  YF LVL++NVAG G+I +V +KG+ + +W +MSRNWG N+QSN+ L GQ+LSF+V  SD     + NV P+NW+FGQ+F
Sbjct:  152 KKVGCRRSGGMRFTINGRNYFELVLISNVAGGGEISKVWIKGSKSNKWETMSRNWGANYQSNTYLNGQSLSFKVQLSDGSIKAALNVVPSNWRFGQSF 249          
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 6.075e-25
Identity = 54/100 (54.00%), Postives = 66/100 (66.00%), Query Frame = -1
Query:  405 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGK 704
            RRVPC K GG++F + G      +L  NV GAGDI+ VS KG+ T W+ MSR WGQNW +N  L GQ++S RVT SD  T    +V PA+W FGQTF GK
Sbjct:  160 RRVPCAKTGGVKFEVKGNPNILTILPYNVGGAGDIIAVSAKGSKTAWVVMSRYWGQNWTTNVNLTGQSVSLRVTTSDGITKDFTDVMPASWGFGQTFDGK 259          
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXP20_ARATH (Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.075e-25
Identity = 51/100 (51.00%), Postives = 71/100 (71.00%), Query Frame = -1
Query:  405 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGK 704
            RRV C +RGG+RF+++G  +F  VL++NV   G++V V VKG  T W+ M+RNWGQNW S+  L+GQ+LSF VT    +T  S++VAP  W+FG T+ GK
Sbjct:  153 RRVKCGRRGGLRFSLSGSSHFFQVLISNVGLDGEVVGVKVKGHTTAWIPMARNWGQNWHSSLDLIGQSLSFEVTLKGGKTIASYDVAPPYWRFGMTYQGK 252          
The following BLAST results are available for this feature:
BLAST of DN617687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
EXP31_ORYSJ8.477e-2757.14Expansin-A31 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP18_ORYSJ8.477e-2757.14Expansin-A18 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP29_ORYSJ1.107e-2657.00Expansin-A29 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP20_ORYSJ1.107e-2657.14Expansin-A20 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP16_ORYSJ3.221e-2655.00Expansin-A16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP12_ARATH5.495e-2652.48Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=... [more]
EXP10_ORYSJ5.495e-2652.00Expansin-A10 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP17_ARATH1.224e-2555.10Putative expansin-A17 OS=Arabidopsis thaliana GN=E... [more]
EXP21_ARATH6.075e-2554.00Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=... [more]
EXP20_ARATH6.075e-2551.00Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I21_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617687 ID=DN617687; Name=DN617687; organism=Citrus sinensis; type=EST; length=704bp
GTAAATCATATCAGCTGCGGGCTACATGTTTTTTTAGTTTGTTCCTGCAG
CCACTTCAGCCACTACACTTTCACCCACGAGACTGGTTTTTAACTATTAC
CACCAGCCCCGGTAAACAAGTCAAACAAAACAAAAACAGTAAAAACTGAA
AATAAACAGAAGTTACCCCACCCACACACACTACATACTTTTAGTCACTT
TTTTCTACTACCTATCACACCATCATTTTGATCTTTTTGATTTTGACCCA
CTTTTACTTTAAAAACCCCTAACACGACCCCCCATAACCCCCTGTTCCTT
CGCTTCAATTTTTTTTCCGGGAAAATAATGGAGAAAAAATCTTGGAAGGC
GGGAAACATGAAAATGTTGAAAAAGAAAATTAAAATTCACTAGACGCGGA
AATTCTTTCCCGAAAAGGTTTGACCGAACTGCCAATTCGCTGGCGCCACG
TTCCAAGAGGTTGAGGTTCTTCTGTCACTGCCCGTAACTCTAAACGAAAG
TGCCTGGCCCACGAGCTGAGAGTTGGATTGCCAGTTTTGCCCCCAGTTGC
GGCTCATGCTCAGCCATTGGGTGTTGGCCCCTTTCACGCTCACGCGCACG
ATATCCCCTGCGCCCGCGACGTTGGTGACCAAGACCAAGTTGAAGTAACG
GAAACCGTTAATTGTGAATCTGATTCCGCCTCGCTTTCTGCAGGGCACCC
TGCG
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