DN617687

Overview
NameDN617687
Unique NameDN617687
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10529 contig Csv1_Contig10529:599..1302. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXPA7_ARATH (Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.353e-24
Identity = 53/98 (54.08%), Postives = 70/98 (71.43%), Query Frame = -1
Query:  414 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNSQLVGQALSFRVTG-SDRRTSTSWNVAPANWQFGQTF 704
            RRVPC++ GG+RF   G  Y+ L+ V NV GAGDI  ++VKG+ T W+SMS NWG ++Q+ S L GQ+LSFRVT  +   T  +WNVAPANW  G+T+
Sbjct:  158 RRVPCQRSGGMRFQFQGNSYWLLIFVMNVGGAGDIKSMAVKGSRTNWISMSHNWGASYQAFSSLYGQSLSFRVTSYTTGETIYAWNVAPANWSGGKTY 255          
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXP25_ARATH (Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.768e-24
Identity = 52/100 (52.00%), Postives = 64/100 (64.00%), Query Frame = -1
Query:  405 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGK 704
            RR+ C + GG++F   G  YF ++L  NV GAGDI  + VKG  T W++M +NWGQNW +   L GQ +SFRVT SD  T    NV P NW FGQTF GK
Sbjct:  174 RRISCARTGGVKFETKGNPYFLMILPYNVGGAGDIKLMQVKGDKTGWITMQKNWGQNWTTGVNLTGQGISFRVTTSDGVTKDFNNVMPNNWGFGQTFDGK 273          
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXP23_ARATH (Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.768e-24
Identity = 52/100 (52.00%), Postives = 64/100 (64.00%), Query Frame = -1
Query:  405 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGK 704
            RR+ C + GG++F   G  YF ++L  NV GAGDI  + VKG  T W++M +NWGQNW +   L GQ +SFRVT SD  T    NV P NW FGQTF GK
Sbjct:  167 RRISCARTGGVKFETKGNPYFLMILPYNVGGAGDIKLMQVKGDKTGWITMQKNWGQNWTTGVNLTGQGISFRVTTSDGVTKDFNNVMPNNWGFGQTFDGK 266          
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXP13_ORYSJ (Expansin-A13 OS=Oryza sativa subsp. japonica GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 3.938e-24
Identity = 53/99 (53.54%), Postives = 68/99 (68.69%), Query Frame = -1
Query:  411 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANT-QWLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFS 704
            +RVPC K+GG+RFTING  YF LVL+TNV  AG I  + VKG+ +  W++M+ NWG  W S + L GQ LSFRVT +D +T    NV    W+FGQTF+
Sbjct:  158 QRVPCMKKGGVRFTINGHDYFQLVLLTNVGAAGSIKAMDVKGSKSPDWMAMAHNWGAQWHSLAYLTGQGLSFRVTITDGQTLVFPNVVRPGWRFGQTFA 256          
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.699e-23
Identity = 45/101 (44.55%), Postives = 70/101 (69.31%), Query Frame = -1
Query:  405 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGAN-TQWLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGK 704
            R+V C ++GGI++TI G   +N+V+V NV GAGD+V+++VKG    +W  + R+WGQ W++ + L G++L+FRV   D R +TSW VAP +W +  T+  K
Sbjct:  187 RKVACVRQGGIKYTITGNPSYNMVMVKNVGGAGDVVKLTVKGTKRVKWTPLQRSWGQLWKTEANLTGESLTFRVMTGDHRKATSWRVAPRDWTYDNTYQAK 287          
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXP18_ARATH (Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.686e-22
Identity = 51/101 (50.50%), Postives = 70/101 (69.31%), Query Frame = -1
Query:  405 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNSQLVGQALSFRVTG-SDRRTSTSWNVAPANWQFGQTFSGK 704
            RRV C+K GGIRF   G  Y+ LV V NV G GDI  ++VKG+ T W++MS NWG ++Q+ S L GQ+LSFR+T  + R+T  ++N APA+W  G+T+  K
Sbjct:  153 RRVACKKIGGIRFKFEGNGYWLLVYVMNVGGPGDIKTMAVKGSRTGWINMSHNWGASYQAFSSLYGQSLSFRLTSYTTRQTIYAYNAAPASWSAGKTYQSK 253          
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXP24_ARATH (Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.641e-20
Identity = 47/101 (46.53%), Postives = 64/101 (63.37%), Query Frame = -1
Query:  405 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNSQLVGQALSFRVTGSDRRTSTSWNVAPANWQF-GQTFSGK 704
            RRVPC K GG++F I G  +F ++L  NV GAG +  + +KG  TQW++M +NWGQ W +   L GQ LSFR+T SD       +V P +W+  GQ+F GK
Sbjct:  209 RRVPCAKIGGVKFEIKGNPHFLMILPYNVGGAGAVRAMQIKGTRTQWIAMKKNWGQIWSTGVVLTGQCLSFRLTTSDGVMKEFIDVTPPDWKCNGQSFDGK 309          
BLAST of DN617687 vs. ExPASy Swiss-Prot
Match: EXP30_ORYSJ (Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.217e-18
Identity = 48/102 (47.06%), Postives = 66/102 (64.71%), Query Frame = -1
Query:  405 RRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSVK-GANTQWLSMSRNWGQNWQSNSQLVGQALSFRVTG-SDRRTSTSWNVAPANWQFGQTFSGK 704
            RRVPC + GG+RF + G  Y+ L  V NVAGAGD+  + VK G    W+ MS NWG ++Q+ +QL GQALSF+VT  +  +T  +  V PA+W FG T+  +
Sbjct:  161 RRVPCARAGGLRFALQGNPYWLLAYVMNVAGAGDVGDMWVKAGGGGGWVRMSHNWGASYQAFAQLGGQALSFKVTSYTTGQTILAAGVTPASWCFGLTYQAR 262          
The following BLAST results are available for this feature:
BLAST of DN617687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
EXPA7_ARATH1.353e-2454.08Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 ... [more]
EXP25_ARATH1.768e-2452.00Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=... [more]
EXP23_ARATH1.768e-2452.00Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=... [more]
EXP13_ORYSJ3.938e-2453.54Expansin-A13 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP26_ORYSJ9.699e-2344.55Expansin-A26 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP18_ARATH3.686e-2250.50Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=... [more]
EXP24_ARATH2.641e-2046.53Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=... [more]
EXP30_ORYSJ4.217e-1847.06Putative expansin-A30 OS=Oryza sativa subsp. japon... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I21_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617687 ID=DN617687; Name=DN617687; organism=Citrus sinensis; type=EST; length=704bp
GTAAATCATATCAGCTGCGGGCTACATGTTTTTTTAGTTTGTTCCTGCAG
CCACTTCAGCCACTACACTTTCACCCACGAGACTGGTTTTTAACTATTAC
CACCAGCCCCGGTAAACAAGTCAAACAAAACAAAAACAGTAAAAACTGAA
AATAAACAGAAGTTACCCCACCCACACACACTACATACTTTTAGTCACTT
TTTTCTACTACCTATCACACCATCATTTTGATCTTTTTGATTTTGACCCA
CTTTTACTTTAAAAACCCCTAACACGACCCCCCATAACCCCCTGTTCCTT
CGCTTCAATTTTTTTTCCGGGAAAATAATGGAGAAAAAATCTTGGAAGGC
GGGAAACATGAAAATGTTGAAAAAGAAAATTAAAATTCACTAGACGCGGA
AATTCTTTCCCGAAAAGGTTTGACCGAACTGCCAATTCGCTGGCGCCACG
TTCCAAGAGGTTGAGGTTCTTCTGTCACTGCCCGTAACTCTAAACGAAAG
TGCCTGGCCCACGAGCTGAGAGTTGGATTGCCAGTTTTGCCCCCAGTTGC
GGCTCATGCTCAGCCATTGGGTGTTGGCCCCTTTCACGCTCACGCGCACG
ATATCCCCTGCGCCCGCGACGTTGGTGACCAAGACCAAGTTGAAGTAACG
GAAACCGTTAATTGTGAATCTGATTCCGCCTCGCTTTCTGCAGGGCACCC
TGCG
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