DN617686

Overview
NameDN617686
Unique NameDN617686
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617686 vs. ExPASy Swiss-Prot
Match: EXP15_ORYSJ (Expansin-A15 OS=Oryza sativa subsp. japonica GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 231.491 bits (589), Expect = 2.632e-60
Identity = 104/163 (63.80%), Postives = 127/163 (77.91%), Query Frame = 2
Query:  131 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCG--GDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRV 613
            W S  ATFYGGSDASGTMGGACGYGNLY  GYG NTAALS+ALFN+G SCG C+++ C    +P+WC  G   + IT TN CPPN+A  S++GGWCNPPR HFD+A P +L++  Y+AGIVPV Y+RVPC K+GG+RFT+ GF YF LVL++NVAG+G I  V
Sbjct:   32 WSSGTATFYGGSDASGTMGGACGYGNLYWSGYGTNTAALSSALFNDGASCGQCYQIACDHQAEPRWCLQGR-TVTITGTNLCPPNYALSSNDGGWCNPPRTHFDMAEPAWLQIGIYKAGIVPVLYQRVPCVKQGGVRFTMGGFNYFELVLISNVAGSGSIQSV 193          
BLAST of DN617686 vs. ExPASy Swiss-Prot
Match: EXPA1_ORYSJ (Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2)

HSP 1 Score: 230.72 bits (587), Expect = 4.489e-60
Identity = 108/169 (63.91%), Postives = 125/169 (73.96%), Query Frame = 2
Query:  116 FAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCG--GDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVS 616
            F    W  A ATFYGGSDASGTMGGACGYG+LYS GYG NTAALST LFN+G SCG C+ + C    D ++C  G  ++ ITATN CPPN+A P+D GGWCNPPR HFD+A P +LK+  Y  GIVPV Y+RVPC K+GG+RFTING  YF LVLV+NV G G I  VS
Sbjct:   29 FTASGWNKAFATFYGGSDASGTMGGACGYGDLYSTGYGTNTAALSTVLFNDGASCGQCYRIMCDYQADRRFCISGT-SVTITATNLCPPNYALPNDAGGWCNPPRQHFDMAEPAWLKIGVYVGGIVPVMYQRVPCAKQGGVRFTINGRDYFELVLVSNVGGVGSIQSVS 196          
BLAST of DN617686 vs. ExPASy Swiss-Prot
Match: EXP25_ORYSJ (Expansin-A25 OS=Oryza sativa subsp. japonica GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 229.95 bits (585), Expect = 7.658e-60
Identity = 103/164 (62.80%), Postives = 128/164 (78.05%), Query Frame = 2
Query:  131 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKC--GGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVS 616
            W    ATFYGG+DASGTMGGACGYGNLY+ GYG NTAALS+ LFN+G SCG C+ + C     PQWC  G  A+ ITATN CPPN+A PS++GGWCNPPRPHFD+A P +L++  Y+AGI+PV Y++V C ++GGIRFT+ GF +F LVLV+NVAG+G +  VS
Sbjct:   27 WNKGTATFYGGADASGTMGGACGYGNLYTAGYGTNTAALSSVLFNDGWSCGQCYLIMCDAAATPQWCRAG-AAVTITATNLCPPNWALPSNSGGWCNPPRPHFDMAEPAWLQIGIYKAGIIPVLYQQVKCWRQGGIRFTMGGFNFFELVLVSNVAGSGSVRSVS 189          
BLAST of DN617686 vs. ExPASy Swiss-Prot
Match: EXP31_ORYSJ (Expansin-A31 OS=Oryza sativa subsp. japonica GN=EXPA31 PE=2 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 1.000e-59
Identity = 106/174 (60.92%), Postives = 128/174 (73.56%), Query Frame = 2
Query:   98 AKIPGVFAGGP---WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGD--PQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDI 604
            A +    AGG    W  A ATFYGGSD SGTMGGACGYGNLY QGYGV+ AALS ALFN+G SCG C+ + C     PQWC  G  A+ +TATN CPPN+A PSD GGWCNPPRPHFD++ P + ++  Y+AGIVPV Y+RV C ++GG+RFT+ G  YF LVL+TNVAG+G +
Sbjct:   14 AVVAACAAGGAVADWSPATATFYGGSDGSGTMGGACGYGNLYDQGYGVDNAALSQALFNDGASCGQCYLIVCDTSRAPQWCKAGT-AVTVTATNLCPPNWALPSDGGGWCNPPRPHFDMSQPAWEQIGVYQAGIVPVLYQRVRCWRQGGVRFTVAGLNYFELVLITNVAGSGSV 186          
BLAST of DN617686 vs. ExPASy Swiss-Prot
Match: EXP18_ARATH (Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 2.910e-59
Identity = 103/163 (63.19%), Postives = 121/163 (74.23%), Query Frame = 2
Query:  116 FAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDI 604
            +AG PW++A ATFYG    S TMGGACGYGN+Y  GYGV T ALSTALFN G +CG CF+LKC   P  C  G+PA ++TATN CPPN+ Q S+NGGWCNPPR HFDL  P F+K+A ++AGI+PVSYRRV C+K GGIRF   G  Y+ LV V NV G GDI
Sbjct:   26 YAGTPWRTASATFYGDDTGSATMGGACGYGNMYDSGYGVATTALSTALFNEGYACGQCFQLKCVSSPN-CYYGSPATVVTATNICPPNYGQASNNGGWCNPPRVHFDLTKPAFMKIANWKAGIIPVSYRRVACKKIGGIRFKFEGNGYWLLVYVMNVGGPGDI 187          
BLAST of DN617686 vs. ExPASy Swiss-Prot
Match: EXP27_ORYSJ (Putative expansin-A27 OS=Oryza sativa subsp. japonica GN=EXPA27 PE=3 SV=2)

HSP 1 Score: 227.639 bits (579), Expect = 3.800e-59
Identity = 104/168 (61.90%), Postives = 125/168 (74.40%), Query Frame = 2
Query:  119 AGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDP--QWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVS 616
            A   W  A ATFYGG+D SGTMGGACGYGNLY QGYG+  AALSTALFN+G +CG C+ + C  D   +WC P   A+ +TATN CPPN+A PSD GGWCNPPR HFD++ P + ++  YRAGIVPV YRRV C +RGG+RFT+ GF +F LVLV NVAG+G +  VS
Sbjct:   23 AADDWIPATATFYGGNDGSGTMGGACGYGNLYDQGYGLENAALSTALFNDGAACGQCYLIVCDTDKAGRWCKPRG-AVTVTATNLCPPNWALPSDGGGWCNPPRRHFDMSQPAWERIGVYRAGIVPVLYRRVRCWRRGGVRFTVGGFDHFELVLVANVAGSGSVAAVS 189          
BLAST of DN617686 vs. ExPASy Swiss-Prot
Match: EXPA3_ORYSJ (Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXPA3 PE=2 SV=2)

HSP 1 Score: 227.254 bits (578), Expect = 4.963e-59
Identity = 101/162 (62.35%), Postives = 126/162 (77.78%), Query Frame = 2
Query:  134 QSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCG-GDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVS 616
            QSA ATFYGG D SGTMGGACGYGNLY+ GYG+  AALS+ALFN+G  CGAC+ + C     +WC PG  +I ITATN CPPN+A PS++GGWCNPPR HFD++ P +  +A Y+AGIVPV+Y+RVPC++ GGIRF I+G  YF LV VTNV G+G + ++S
Sbjct:   29 QSAFATFYGGKDGSGTMGGACGYGNLYNAGYGLYNAALSSALFNDGAMCGACYTITCDTSQTKWCKPGGNSITITATNLCPPNWALPSNSGGWCNPPRQHFDMSQPAWENIAVYQAGIVPVNYKRVPCQRSGGIRFAISGHDYFELVTVTNVGGSGVVAQMS 190          
BLAST of DN617686 vs. ExPASy Swiss-Prot
Match: EXP33_ORYSJ (Expansin-A33 OS=Oryza sativa subsp. japonica GN=EXPA33 PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 2.463e-58
Identity = 102/163 (62.58%), Postives = 125/163 (76.69%), Query Frame = 2
Query:  131 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCG-GDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVS 616
            W  A ATFYGGSD +GTMGGACGYGNLY+ GYG+N AALS+ALFN+G  CGAC+ + C      WC PG  +I ITATN CPPN+A+ SD GGWCNPPR HFD++ P +  +A Y+AGIVPV+++RVPC+K GGIRFTI+G  YF LV V NV G+G + +VS
Sbjct:   23 WTPATATFYGGSDGAGTMGGACGYGNLYNAGYGLNNAALSSALFNDGAMCGACYTIACDTSQSTWCKPGT-SITITATNLCPPNYAKKSDAGGWCNPPRKHFDMSQPAWTSIAIYQAGIVPVNFKRVPCQKSGGIRFTISGRDYFELVTVFNVGGSGVVAQVS 184          
BLAST of DN617686 vs. ExPASy Swiss-Prot
Match: EXP11_ARATH (Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 5.488e-58
Identity = 104/162 (64.20%), Postives = 123/162 (75.93%), Query Frame = 2
Query:  137 SAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKC--GGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVS 616
            + HATFYGGSDASGTMGGACGYG+LYS GYG  TAALSTALFN+G SCG C+ + C    D +WC  G  +++ITATNFCPPNFA P++NGGWCNPP  HFD+A P + K+  YR GIVPV ++RV C K+GG+RF ING  YF LV + NV GAG I  VS
Sbjct:   28 NGHATFYGGSDASGTMGGACGYGDLYSAGYGTMTAALSTALFNDGASCGECYRITCDHAADSRWCLKG-ASVVITATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVVFQRVSCYKKGGVRFRINGRDYFELVNIQNVGGAGSIKSVS 188          
BLAST of DN617686 vs. ExPASy Swiss-Prot
Match: EXP12_ORYSJ (Expansin-A12 OS=Oryza sativa subsp. japonica GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 9.361e-58
Identity = 99/160 (61.88%), Postives = 126/160 (78.75%), Query Frame = 2
Query:  137 SAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCG-GDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRV 613
            S  ATFYGGSDASGTMGGACGYGNLYS GYG NTAALS+ALFN+G +CG C+++ C   + +WC  G  ++ ITATN CPP++++PS++GGWCNPPR HFD+A P + ++  YR GIVPV+++RV C ++GG+RFTING  YF LVL+TNV G G I  V
Sbjct:   26 SGTATFYGGSDASGTMGGACGYGNLYSTGYGTNTAALSSALFNDGAACGECYQITCDQSNSKWCKAGT-SVTITATNLCPPDYSKPSNDGGWCNPPRQHFDMAQPAWEQIGVYRGGIVPVNFQRVSCTRKGGVRFTINGNSYFELVLITNVGGPGSIKSV 184          
The following BLAST results are available for this feature:
BLAST of DN617686 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
EXP15_ORYSJ2.632e-6063.80Expansin-A15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA1_ORYSJ4.489e-6063.91Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP25_ORYSJ7.658e-6062.80Expansin-A25 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP31_ORYSJ1.000e-5960.92Expansin-A31 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP18_ARATH2.910e-5963.19Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=... [more]
EXP27_ORYSJ3.800e-5961.90Putative expansin-A27 OS=Oryza sativa subsp. japon... [more]
EXPA3_ORYSJ4.963e-5962.35Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP33_ORYSJ2.463e-5862.58Expansin-A33 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP11_ARATH5.488e-5864.20Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=... [more]
EXP12_ORYSJ9.361e-5861.88Expansin-A12 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I21_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617686 ID=DN617686; Name=DN617686; organism=Citrus sinensis; type=EST; length=616bp
CAACTTCTCTGTCTCCCTCTCTTCAACTCCAACAATGGCTCTTTTCAGAA
TGCTCTGCTTTTTCTCACTGGCACTCTCCTTATTTGCGACGGCCAACGCC
AAGATTCCCGGTGTCTTCGCCGGTGGCCCCTGGCAATCGGCCCACGCCAC
TTTTTACGGTGGCAGCGATGCTTCCGGCACTATGGGTGGTGCTTGTGGGT
ACGGGAATCTGTACAGCCAGGGCTACGGAGTGAACACGGCGGCTCTCAGC
ACGGCGCTGTTCAACAACGGCTTGAGCTGCGGCGCGTGCTTCGAGTTAAA
GTGCGGCGGCGACCCGCAGTGGTGTAACCCGGGTAACCCGGCCATTCTGA
TCACGGCCACCAACTTTTGCCCCCCGAACTTCGCTCAGCCCTCCGATAAT
GGCGGGTGGTGCAACCCTCCTCGCCCTCATTTCGATCTGGCCATGCCTAT
GTTCCTCAAGCTTGCCCAGTACCGCGCTGGTATCGTCCCCGTTTCTTACC
GCAGGGTGCCCTGCAGAAAGCGAGGCGGAATCAGATTCACAATTAACGGT
TTCCGTTACTTCAACTTGGTCTTGGTCACCAACGTCGCGGGCGCAGGGGA
TATCGTGCGCGTGAGC
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