DN617686

Overview
NameDN617686
Unique NameDN617686
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10529 contig Csv1_Contig10529:100..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617686 vs. ExPASy Swiss-Prot
Match: EXPA7_ARATH (Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.306e-56
Identity = 97/167 (58.08%), Postives = 121/167 (72.46%), Query Frame = 2
Query:  104 IPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDI 604
            + G +  GPW+ AHATFYG      TMGGACGYGNL++ GYG++TAALST LFN+G  CG CF++ C   P  C  G   + +TATN CPPN+ Q S+ GGWCNPPR HFD+A P F+KLA +RAGI+PV+YRRVPC++ GG+RF   G  Y+ L+ V NV GAGDI
Sbjct:   28 VAGYYRPGPWRYAHATFYGDETGGETMGGACGYGNLFNSGYGLSTAALSTTLFNDGYGCGQCFQITCSKSPH-CYSGKSTV-VTATNLCPPNWYQDSNAGGWCNPPRTHFDMAKPAFMKLAYWRAGIIPVAYRRVPCQRSGGMRFQFQGNSYWLLIFVMNVGGAGDI 192          
BLAST of DN617686 vs. ExPASy Swiss-Prot
Match: EXP30_ORYSJ (Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.494e-55
Identity = 99/173 (57.23%), Postives = 121/173 (69.94%), Query Frame = 2
Query:   92 ANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGG--WCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDI 604
            A   +   F    W  AHATFYG   AS TMGGACGYGNLY+ GYG +TAALST LF +G  CG C++++C G    C  G+PAI +TATN CPPN+A+  D GG  WCNPPR HFDL+ P F+++A +RAGIVPV YRRVPC + GG+RF + G  Y+ L  V NVAGAGD+
Sbjct:   24 AATTVDAKFRAMQWTPAHATFYGDETASETMGGACGYGNLYASGYGTDTAALSTTLFKDGYGCGTCYQMRCVGTAS-CYRGSPAITVTATNLCPPNWAEDPDRGGGGWCNPPRAHFDLSKPAFMRMADWRAGIVPVMYRRVPCARAGGLRFALQGNPYWLLAYVMNVAGAGDV 195          
BLAST of DN617686 vs. ExPASy Swiss-Prot
Match: EXPA9_ORYSJ (Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXPA9 PE=2 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 1.952e-55
Identity = 97/163 (59.51%), Postives = 121/163 (74.23%), Query Frame = 2
Query:  119 AGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDP-QWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDI 604
            A   W SA ATFYGGSDASGTMGG+CGYGN+YS GYG NT ALS+AL+ +G SCGAC+ + C     +WC  G  ++ +TATN+CPPN+++  D GGWCNPPR HFD++ P +  +A Y +GIVPV Y R PCR+ GGIRF I G  Y+ LVLVTNVAG+G +
Sbjct:   23 AAQQWTSATATFYGGSDASGTMGGSCGYGNMYSAGYGTNTTALSSALYGDGASCGACYLVTCDASATRWCKNGT-SVTVTATNYCPPNYSESGDAGGWCNPPRRHFDMSQPAWEAIAVYSSGIVPVRYARTPCRRVGGIRFGIAGHDYYELVLVTNVAGSGAV 184          
BLAST of DN617686 vs. ExPASy Swiss-Prot
Match: EXP26_ARATH (Putative expansin-A26 OS=Arabidopsis thaliana GN=EXPA26 PE=3 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 2.158e-54
Identity = 95/158 (60.13%), Postives = 119/158 (75.32%), Query Frame = 2
Query:  131 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDI 604
            W  A ATFYG      T  GACGYGNL+ QGYG+ TAALSTALFN+G +CGAC+E+ C  DPQWC PG  ++ ITATNFCP N+++ +D   WCNPP+ HFDL++ MFLK+A+Y+AG+VPV YRR+PC K GG++F   G  YF +VL+ NV GAGDI
Sbjct:   58 WYDARATFYGDIHGGDTQQGACGYGNLFRQGYGLATAALSTALFNDGYTCGACYEIMCTRDPQWCLPG--SVKITATNFCPANYSKTTDL--WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIPCSKTGGVKFETKGNPYFLMVLIYNVGGAGDI 211          
BLAST of DN617686 vs. ExPASy Swiss-Prot
Match: EXP22_ARATH (Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 2.158e-54
Identity = 95/158 (60.13%), Postives = 119/158 (75.32%), Query Frame = 2
Query:  131 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDI 604
            W  A ATFYG      T  GACGYGNL+ QGYG+ TAALSTALFN+G +CGAC+E+ C  DPQWC PG  ++ ITATNFCP N+++ +D   WCNPP+ HFDL++ MFLK+A+Y+AG+VPV YRR+PC K GG++F   G  YF +VL+ NV GAGDI
Sbjct:   52 WYDARATFYGDIHGGDTQQGACGYGNLFRQGYGLATAALSTALFNDGYTCGACYEIMCTRDPQWCLPG--SVKITATNFCPANYSKTTDL--WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIPCSKTGGVKFETKGNPYFLMVLIYNVGGAGDI 205          
BLAST of DN617686 vs. ExPASy Swiss-Prot
Match: EXP24_ARATH (Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 210.305 bits (534), Expect = 6.279e-54
Identity = 95/158 (60.13%), Postives = 118/158 (74.68%), Query Frame = 2
Query:  131 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDI 604
            W    ATFYG  +   T  GACGYG+L+ QGYG+ TAALSTALFNNG  CGAC+E+ C   PQWC PG  +I ITATNFCPP+F +P+DN  WCNPP+ HFDL+ PMFLK+A+Y+AG+VPV +RRVPC K GG++F I G  +F ++L  NV GAG +
Sbjct:   90 WGHGRATFYGDINGGETQQGACGYGDLHKQGYGLETAALSTALFNNGSRCGACYEIMCEHAPQWCLPG--SIKITATNFCPPDFTKPNDN--WCNPPQKHFDLSQPMFLKIAKYKAGVVPVKFRRVPCAKIGGVKFEIKGNPHFLMILPYNVGGAGAV 243          
BLAST of DN617686 vs. ExPASy Swiss-Prot
Match: EXP19_ORYSJ (Expansin-A19 OS=Oryza sativa subsp. japonica GN=EXPA19 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.071e-53
Identity = 97/168 (57.74%), Postives = 118/168 (70.24%), Query Frame = 2
Query:  119 AGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGD--PQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVS 616
            A   W    ATFYGG+D SGTMGGACGYGNLY QGYG+N AALST LFN+G SCG C+ + C     P WC  G  AI +T TN+CPPN+  P   GGWCN  RPHFD++ P +  +  Y AGI+P+ Y++V C + GG+RFTINGF YF LVLVTN+AG+G I  +S
Sbjct:   19 ARSDWLPGTATFYGGADGSGTMGGACGYGNLYDQGYGINNAALSTPLFNDGASCGQCYLIICDYSKAPDWCKLGK-AITVTGTNYCPPNYDLPY--GGWCNATRPHFDMSQPAWENIGIYNAGIIPILYQQVKCWRYGGVRFTINGFNYFELVLVTNMAGSGSIASMS 183          
BLAST of DN617686 vs. ExPASy Swiss-Prot
Match: EXP23_ARATH (Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=2 SV=2)

HSP 1 Score: 208.764 bits (530), Expect = 1.827e-53
Identity = 92/158 (58.23%), Postives = 117/158 (74.05%), Query Frame = 2
Query:  131 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDI 604
            W  A ATFYG      T  GACGYG+L+ QGYG+ TAALSTALFN G +CGAC+++ C  DPQWC PG  ++ ITATNFCPP++++    G WCNPP+ HFDL++PMFLK+AQY+AG+VPV YRR+ C + GG++F   G  YF ++L  NV GAGDI
Sbjct:   48 WYDARATFYGDIHGGETQQGACGYGDLFKQGYGLETAALSTALFNEGYTCGACYQIMCVNDPQWCLPG--SVKITATNFCPPDYSK--TEGVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRRISCARTGGVKFETKGNPYFLMILPYNVGGAGDI 201          
BLAST of DN617686 vs. ExPASy Swiss-Prot
Match: EXP25_ARATH (Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 207.994 bits (528), Expect = 3.116e-53
Identity = 93/158 (58.86%), Postives = 116/158 (73.42%), Query Frame = 2
Query:  131 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDI 604
            W  A ATFYG      T  GACGYG+L+ QGYG+ TAALSTALFN G +CGAC+++ C  DPQWC PG   I ITATNFCPP++++    G WCNPP+ HFDL++PMFLK+AQY+AG+VPV YRR+ C + GG++F   G  YF ++L  NV GAGDI
Sbjct:   55 WYDARATFYGDIHGGETQQGACGYGDLFKQGYGLETAALSTALFNEGYTCGACYQIMCVHDPQWCLPG--TIKITATNFCPPDYSK--TEGVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRRISCARTGGVKFETKGNPYFLMILPYNVGGAGDI 208          
BLAST of DN617686 vs. ExPASy Swiss-Prot
Match: EXP18_ORYSJ (Expansin-A18 OS=Oryza sativa subsp. japonica GN=EXPA18 PE=2 SV=2)

HSP 1 Score: 206.453 bits (524), Expect = 9.067e-53
Identity = 97/164 (59.15%), Postives = 115/164 (70.12%), Query Frame = 2
Query:  131 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGD--PQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVRVS 616
            W    ATFYGG+D SGTMGGACGYGNLY QGYG+N AALST LFNNG SCG C+ + C  D  P  C  G  AI +T TNFCPPN+  P   GGWCN  RPHFD++ P +  +  Y AGIVP+ Y++V C + GG+RFTI G  YF LVLVTN+AG+G I  +S
Sbjct:   23 WLQGTATFYGGADGSGTMGGACGYGNLYDQGYGINNAALSTPLFNNGASCGQCYLIICNYDKAPSGCRMGT-AITVTGTNFCPPNYDLP--YGGWCNTTRPHFDMSQPAWENIGIYSAGIVPILYQQVKCWRSGGVRFTITGLNYFELVLVTNMAGSGSIASMS 183          
The following BLAST results are available for this feature:
BLAST of DN617686 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
EXPA7_ARATH2.306e-5658.08Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 ... [more]
EXP30_ORYSJ1.494e-5557.23Putative expansin-A30 OS=Oryza sativa subsp. japon... [more]
EXPA9_ORYSJ1.952e-5559.51Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP26_ARATH2.158e-5460.13Putative expansin-A26 OS=Arabidopsis thaliana GN=E... [more]
EXP22_ARATH2.158e-5460.13Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=... [more]
EXP24_ARATH6.279e-5460.13Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=... [more]
EXP19_ORYSJ1.071e-5357.74Expansin-A19 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP23_ARATH1.827e-5358.23Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=... [more]
EXP25_ARATH3.116e-5358.86Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=... [more]
EXP18_ORYSJ9.067e-5359.15Expansin-A18 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I21_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617686 ID=DN617686; Name=DN617686; organism=Citrus sinensis; type=EST; length=616bp
CAACTTCTCTGTCTCCCTCTCTTCAACTCCAACAATGGCTCTTTTCAGAA
TGCTCTGCTTTTTCTCACTGGCACTCTCCTTATTTGCGACGGCCAACGCC
AAGATTCCCGGTGTCTTCGCCGGTGGCCCCTGGCAATCGGCCCACGCCAC
TTTTTACGGTGGCAGCGATGCTTCCGGCACTATGGGTGGTGCTTGTGGGT
ACGGGAATCTGTACAGCCAGGGCTACGGAGTGAACACGGCGGCTCTCAGC
ACGGCGCTGTTCAACAACGGCTTGAGCTGCGGCGCGTGCTTCGAGTTAAA
GTGCGGCGGCGACCCGCAGTGGTGTAACCCGGGTAACCCGGCCATTCTGA
TCACGGCCACCAACTTTTGCCCCCCGAACTTCGCTCAGCCCTCCGATAAT
GGCGGGTGGTGCAACCCTCCTCGCCCTCATTTCGATCTGGCCATGCCTAT
GTTCCTCAAGCTTGCCCAGTACCGCGCTGGTATCGTCCCCGTTTCTTACC
GCAGGGTGCCCTGCAGAAAGCGAGGCGGAATCAGATTCACAATTAACGGT
TTCCGTTACTTCAACTTGGTCTTGGTCACCAACGTCGCGGGCGCAGGGGA
TATCGTGCGCGTGAGC
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