DN617686

Overview
NameDN617686
Unique NameDN617686
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10529 contig Csv1_Contig10529:100..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617686 vs. ExPASy Swiss-Prot
Match: EXPB5_ORYSJ (Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXPB5 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 5.552e-18
Identity = 58/174 (33.33%), Postives = 86/174 (49.43%), Query Frame = 2
Query:  122 GGPWQSAHATFYGGSDASGTMGGACGYGNLYSQ-GYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTINGFR--YFNLVLVTNVAGAGDIVRV 613
            G  W S  AT+YGG    G+ GGACGY +   Q  +    AA   +LF NG  CG+C+++KC G+ + C+ G P + +  T+ CP         GG C     HFD++   F  +A          AG++ + Y+RVPCR    + F ++     Y+  +LV    G GD+  V
Sbjct:   42 GYGWSSGGATWYGGPQGDGSEGGACGYQSAVGQRPFSSMIAAGGPSLFKNGKGCGSCYQIKCTGN-RACS-GRP-VTVVITDSCP---------GGVCLNEAAHFDMSGTAFGAMANRGMGDRLRSAGVLKIQYKRVPCRFAMNVAFKVDAGSNPYYLAILVQYANGDGDLAAV 203          
BLAST of DN617686 vs. ExPASy Swiss-Prot
Match: EXB15_ORYSJ (Expansin-B15 OS=Oryza sativa subsp. japonica GN=EXPB15 PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.786e-16
Identity = 60/171 (35.09%), Postives = 91/171 (53.22%), Query Frame = 2
Query:  131 WQSAHATFYGGSDASGTMGGACGY-GNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLA------QYR-AGIVPVSYRRVPCRKRGGIRFTI-----NGFRYFNLVLVTNVAGAGDI 604
            W +  AT+YG ++ +G+ GGACGY G ++   +    AA S +++ +GL CG+C+++KC G+   C+ GNP + +  T+ CP         GG C     HFDL+   F  +A      Q R AG++ + Y RVPC   GG++ T      +   YF  VLV    G GD+
Sbjct:   37 WSNGGATWYGAANGAGSDGGACGYQGAVFQAPFSSMIAAGSPSIYKSGLGCGSCYQVKCTGNSA-CS-GNP-VTVVLTDECP---------GGPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPC-NWGGVKLTFVVDVGSNPNYF-AVLVKYENGDGDL 193          
BLAST of DN617686 vs. ExPASy Swiss-Prot
Match: EXB18_ORYSJ (Expansin-B18 OS=Oryza sativa subsp. japonica GN=EXPB18 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.512e-15
Identity = 60/171 (35.09%), Postives = 88/171 (51.46%), Query Frame = 2
Query:  131 WQSAHATFYGGSDASGTMGGACGYGNLYSQG-YGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLA------QYR-AGIVPVSYRRVPCRKRGGIRFTI-----NGFRYFNLVLVTNVAGAGDI 604
            W +  AT+YG ++ +G+ GGACGY     Q  +    AA S +++ +GL CG+C+++KC G+   C+ GNP + +  T+ CP         GG C     HFDL+   F  +A      Q R AG++ + Y RVPC   GG+  T      +   YF  VLV    G GD+
Sbjct:   37 WSNGGATWYGAANGAGSDGGACGYQAAVDQAPFSSMIAAGSPSIYKSGLGCGSCYQVKCSGNSA-CS-GNP-VTVVLTDECP---------GGPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPC-NWGGVMLTFAVDAGSNPSYF-AVLVKYENGDGDL 193          
BLAST of DN617686 vs. ExPASy Swiss-Prot
Match: EXPB3_ARATH (Expansin-B3 OS=Arabidopsis thaliana GN=EXPB3 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 5.745e-15
Identity = 57/169 (33.73%), Postives = 82/169 (48.52%), Query Frame = 2
Query:  131 WQSAHATFYGGSDASGTMGGACGYGNLYS-QGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLA-------QYRAGIVPVSYRRVPCRKRG-GIRFTIN--GFRYFNLVLVTNVAGAGDI 604
            W  A AT+YG  +  G+ GGACGYG L   +       A++  LF NG  CGAC++++C  D   C+    A+ +  T+ CP            C+    HFDL+  +F +LA           G++PV YRR  C+ RG  I F +N     ++  +LV    G GDI
Sbjct:   36 WLPAVATWYGSPNGDGSDGGACGYGTLVDVKPLHARVGAVNPILFKNGEGCGACYKVRC-LDKSICS--RRAVTVIITDECP-----------GCSKTSTHFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGKNIAFHVNEGSTDFWLSLLVEFEDGEGDI 190          
BLAST of DN617686 vs. ExPASy Swiss-Prot
Match: EXB16_ORYSJ (Expansin-B16 OS=Oryza sativa subsp. japonica GN=EXPB16 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.745e-15
Identity = 59/169 (34.91%), Postives = 79/169 (46.75%), Query Frame = 2
Query:  131 WQSAHATFYGGSDASGTMGGACGYGNLYS-QGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLA-------QYRAGIVPVSYRRVPCRKRG-GIRFTIN--GFRYFNLVLVTNVAGAGDI 604
            W  A AT+YG +D  G+ GGACGYG L           A+S  LF  G  CGAC++++C  D   C+    A+ +  T+ CP         GG C   R HFDL+   F +LA           G + V YRR  C+  G  I F +N     ++  +LV    G GDI
Sbjct:   45 WHPATATWYGSADGDGSDGGACGYGTLVDVVPMKTRVGAVSPVLFKGGEGCGACYKVRC-LDASICS--RRAVTVIVTDECP---------GGVCAFGRTHFDLSGAAFARLAVAGHGGQLQNRGEISVVYRRTACKYGGKNIAFHVNEGSTTFWLSLLVEFEDGDGDI 201          
BLAST of DN617686 vs. ExPASy Swiss-Prot
Match: EXB11_ORYSJ (Expansin-B11 OS=Oryza sativa subsp. japonica GN=EXPB11 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.745e-15
Identity = 64/179 (35.75%), Postives = 87/179 (48.60%), Query Frame = 2
Query:  107 PGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQ-GYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRG-GIRFTI----NGFRYFNLVLVTNVAGAGDI 604
            P V     W +A AT+YG  +  G+ GGACGY     Q  +    AA S +L+  G  CGAC+E+KC  +   C+ G PA ++  T+ CP         GG C     HFD++      +A+         AGI+ V YRRVPC+  G  I F +    N F YF  VL+    G GD+
Sbjct:   56 PSVTVTTGWAAAGATYYGAPNGDGSDGGACGYQTAVGQRPFSSMIAAGSPSLYKGGKGCGACYEVKCTTNAA-CS-GQPATVV-ITDECP---------GGICLAGAAHFDMSGTSMGAMAKPGMADKLRAAGILQVQYRRVPCKYSGVNIAFRVDQGANPF-YFE-VLIEFEDGDGDL 220          
BLAST of DN617686 vs. ExPASy Swiss-Prot
Match: EXB17_ORYSJ (Expansin-B17 OS=Oryza sativa subsp. japonica GN=EXPB17 PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 9.800e-15
Identity = 58/169 (34.32%), Postives = 83/169 (49.11%), Query Frame = 2
Query:  131 WQSAHATFYGGSDASGTMGGACGYGNLYS-QGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRA-------GIVPVSYRRVPCRKRG-GIRFTIN--GFRYFNLVLVTNVAGAGDI 604
            W+ A AT+YG ++  G+ GGACGYG+L           ++S  LF +G  CGAC+++KC  D   C+    A+ +  T+ CP         GG C   R HFDL+   F ++A   A       G + V YRR  C+  G  I F +N     ++  +LV    G GDI
Sbjct:   48 WRPATATWYGDAEGDGSTGGACGYGSLVDVVPMKARVGSVSPVLFKDGEGCGACYKVKC-LDHGICS--RRAVTVIVTDECP---------GGLCAFGRTHFDLSGAAFSRMAVAGAGGHLRDRGQLSVVYRRTACKYGGKNIAFRVNEGSTNFWLSLLVEFEDGQGDI 204          
BLAST of DN617686 vs. ExPASy Swiss-Prot
Match: EXPB7_ORYSJ (Expansin-B7 OS=Oryza sativa subsp. japonica GN=EXPB7 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.280e-14
Identity = 53/176 (30.11%), Postives = 86/176 (48.86%), Query Frame = 2
Query:  122 GGPWQSAHATFYGGSDASGT--MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRG-GIRFTI--NGFRYFNLVLVTNVAGAGDIVRV 613
            GG W +A AT+YG  + +G    GGACG+ N+    +   T+  +  LF +G  CG+C++++C G P  C+     ++IT  N+ P +                HFDL+   F  +A+         AGI+ + +RRVPC+  G  + F +       +  +LV    G GD+V+V
Sbjct:   89 GGGWLNARATWYGAPNGAGPDDNGGACGFKNVNLPPFSAMTSCGNEPLFKDGKGCGSCYQIRCVGHPA-CSGLPETVIITDMNYYPVSLY--------------HFDLSGTAFGAMAKDNRNDELRHAGIIDIQFRRVPCQYPGLTVTFHVEQGSNPVYMAILVEYENGDGDVVQV 249          
BLAST of DN617686 vs. ExPASy Swiss-Prot
Match: EXPB1_ARATH (Expansin-B1 OS=Arabidopsis thaliana GN=EXPB1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.152e-13
Identity = 55/169 (32.54%), Postives = 81/169 (47.93%), Query Frame = 2
Query:  131 WQSAHATFYGGSDASGTMGGACGYGNLYS-QGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLA-------QYRAGIVPVSYRRVPCRKRG-GIRFTIN--GFRYFNLVLVTNVAGAGDI 604
            W  A AT+YG ++  G+ GGACGYG+L   + +     A+S  LF  G  CGAC++++C  D   C+    A+ I AT+  P        +G        HFDL+   F  +A           G++ + YRR  C+ RG  I F +N     Y+  +L+    G GDI
Sbjct:   40 WLPATATWYGSAEGDGSSGGACGYGSLVDVKPFKARVGAVSPILFKGGEGCGACYKVRC-LDKTICS--KRAVTIIATDQSP--------SGPSAKAKHTHFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLIEYEDGEGDI 197          
BLAST of DN617686 vs. ExPASy Swiss-Prot
Match: EXPB4_ORYSJ (Expansin-B4 OS=Oryza sativa subsp. japonica GN=EXPB4 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.117e-13
Identity = 56/176 (31.82%), Postives = 86/176 (48.86%), Query Frame = 2
Query:  125 GPWQSAHATFYGGSDASGT--MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRG-GIRFTINGFR---YFNLVLVTNVAGAGDIVRV 613
            GPW  A AT+YG  + +G    GGACG+ +     +   T+  +  LF +G  CG+C++++C  D Q C+  +  ++IT  N+ P     P            HFDL+   F +LA+         +GI+ + + RVPC   G  I F +  +    YF  VLV    G GD+V+V
Sbjct:   53 GPWTKARATWYGQPNGAGPDDNGGACGFKHTNQYPFMSMTSCGNQPLFKDGKGCGSCYKIRCTKD-QSCSGRSETVIITDMNYYP---VAPF-----------HFDLSGTAFGRLAKPGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSNPVYF-AVLVEYEDGDGDVVQV 212          
The following BLAST results are available for this feature:
BLAST of DN617686 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
EXPB5_ORYSJ5.552e-1833.33Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXB15_ORYSJ1.786e-1635.09Expansin-B15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB18_ORYSJ1.512e-1535.09Expansin-B18 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB3_ARATH5.745e-1533.73Expansin-B3 OS=Arabidopsis thaliana GN=EXPB3 PE=2 ... [more]
EXB16_ORYSJ5.745e-1534.91Expansin-B16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB11_ORYSJ5.745e-1535.75Expansin-B11 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB17_ORYSJ9.800e-1534.32Expansin-B17 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB7_ORYSJ1.280e-1430.11Expansin-B7 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPB1_ARATH3.152e-1332.54Expansin-B1 OS=Arabidopsis thaliana GN=EXPB1 PE=2 ... [more]
EXPB4_ORYSJ4.117e-1331.82Expansin-B4 OS=Oryza sativa subsp. japonica GN=EXP... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I21_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617686 ID=DN617686; Name=DN617686; organism=Citrus sinensis; type=EST; length=616bp
CAACTTCTCTGTCTCCCTCTCTTCAACTCCAACAATGGCTCTTTTCAGAA
TGCTCTGCTTTTTCTCACTGGCACTCTCCTTATTTGCGACGGCCAACGCC
AAGATTCCCGGTGTCTTCGCCGGTGGCCCCTGGCAATCGGCCCACGCCAC
TTTTTACGGTGGCAGCGATGCTTCCGGCACTATGGGTGGTGCTTGTGGGT
ACGGGAATCTGTACAGCCAGGGCTACGGAGTGAACACGGCGGCTCTCAGC
ACGGCGCTGTTCAACAACGGCTTGAGCTGCGGCGCGTGCTTCGAGTTAAA
GTGCGGCGGCGACCCGCAGTGGTGTAACCCGGGTAACCCGGCCATTCTGA
TCACGGCCACCAACTTTTGCCCCCCGAACTTCGCTCAGCCCTCCGATAAT
GGCGGGTGGTGCAACCCTCCTCGCCCTCATTTCGATCTGGCCATGCCTAT
GTTCCTCAAGCTTGCCCAGTACCGCGCTGGTATCGTCCCCGTTTCTTACC
GCAGGGTGCCCTGCAGAAAGCGAGGCGGAATCAGATTCACAATTAACGGT
TTCCGTTACTTCAACTTGGTCTTGGTCACCAACGTCGCGGGCGCAGGGGA
TATCGTGCGCGTGAGC
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