DN617686

Overview
NameDN617686
Unique NameDN617686
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10529 contig Csv1_Contig10529:100..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617686 vs. ExPASy Swiss-Prot
Match: EXB10_ORYSJ (Expansin-B10 OS=Oryza sativa subsp. japonica GN=EXPB10 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.730e-11
Identity = 56/178 (31.46%), Postives = 83/178 (46.63%), Query Frame = 2
Query:  122 GGPWQSAHATFYGGSDASGT--MGGACGYGNLYSQGY-GVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTINGFRYFN----LVLVTNVAGAGDIVRV 613
            G  W  A  T+YG    +G    GGACGY ++    + G+N+   +  +F +G  CG+CFE+KC   P+ C+     I IT  N  P                  HFDL+   F  +A+        +AGI+ + +RRV C+  G  + T +  +  N     VLV  V G GD+V+V
Sbjct:   38 GKQWLEARGTWYGKPKGAGPDDNGGACGYKDIDKAPFLGMNSCG-NDPIFKDGKGCGSCFEVKC-SKPEACSDKPVIIHITDMNTEP--------------IAAYHFDLSGHAFGAMAKEGKDEELRKAGIIDMQFRRVRCKYPGETKVTFHVEKGSNPNYFAVLVKYVGGDGDVVKV 199          
BLAST of DN617686 vs. ExPASy Swiss-Prot
Match: EXPB8_ORYSJ (Expansin-B8 OS=Oryza sativa subsp. japonica GN=EXPB8 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 50/173 (28.90%), Postives = 78/173 (45.09%), Query Frame = 2
Query:  131 WQSAHATFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRG---GIRFTINGFRYFNLVLVTNVAGAGDIVRV 613
            W +A AT+YG  + +G    GGACG+  +    +   T+  +  L+  G  CG+C+ ++C  +P  C+     + IT  N+ P +              + HFDL+   F +LA+        RAGI+ V + RVPC   G   G          +  VLV    G GD+ +V
Sbjct:   48 WGNAKATWYGQPNGAGAADNGGACGFKKVNQYPFMGMTSCGNQPLYKGGKGCGSCYRVRCNRNPA-CSGNAQTVAITDMNYFPLS--------------QYHFDLSGIAFGRLAKPGRADDLRRAGIIDVQFARVPCEFPGLKVGFHVEEGSSPVYLAVLVEYENGDGDVAQV 205          
BLAST of DN617686 vs. ExPASy Swiss-Prot
Match: EXLB1_ARATH (Expansin-like B1 OS=Arabidopsis thaliana GN=EXLB1 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 47/163 (28.83%), Postives = 75/163 (46.01%), Query Frame = 2
Query:  137 SAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRG-GIRFTINGFRY---FNLVLVTNVAGAGDIVRV 613
            ++ AT+YG  D      G CGYG           + +S  L+NNG  CGAC++++C   P     G   + + AT+      +   D   +   P+ +  +A P   +   Y  G+V V Y+R+PCR  G  + + I+   Y   +  +LV  V G  DI+ V
Sbjct:   29 NSRATYYGSPDCKANPRGHCGYGEFGRDINNGEVSGVSWRLWNNGTGCGACYQVRCKIPPHCSEEG---VYVVATD------SGEGDGTDFILSPKAYGRMARP-GTENQLYSFGVVNVEYQRIPCRYAGYNLVYKIHEKSYNPHYLAILVLYVGGVNDILAV 181          
BLAST of DN617686 vs. ExPASy Swiss-Prot
Match: MPAL1_LOLPR (Pollen allergen Lol p 1 OS=Lolium perenne PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 56/178 (31.46%), Postives = 83/178 (46.63%), Query Frame = 2
Query:  122 GGPWQSAHATFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRP-HFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTINGFRYFN----LVLVTNVAGAGDIVRV 613
            G  W  A +T+YG    +G    GGACGY N+    +   T   +T +F +G  CG+CFE+KC   P+ C+    A+ +T T+          DN     P  P HFDL+   F  +A+         AG + + +RRV C+     + T +  +  N     +LV  V G GD+V V
Sbjct:   38 GDKWLDAKSTWYGKPTGAGPKDNGGACGYKNVDKAPFNGMTGCGNTPIFKDGRGCGSCFEIKC-TKPESCS--GEAVTVTITD----------DNE---EPIAPYHFDLSGHAFGSMAKKGEEQNVRSAGELELQFRRVKCKYPDDTKPTFHVEKASNPNYLAILVKYVDGDGDVVAV 199          
BLAST of DN617686 vs. ExPASy Swiss-Prot
Match: MPAC1_CYNDA (Major pollen allergen Cyn d 1 OS=Cynodon dactylon GN=CYND1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.854e-11
Identity = 53/178 (29.78%), Postives = 81/178 (45.51%), Query Frame = 2
Query:  122 GGPWQSAHATFYGGSD---ASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTIN----GFRYFNLVLVTNVAGAGDIVRV 613
            G  W  A ATFYG +    A    GGACGY ++    +   TA  +  +F +GL C AC+E+KC  +P  C+     + IT  N+               +    HFDL+   F  +A+        +AG + + +RRV C+   G + T +       ++  +LV   AG G+IV V
Sbjct:   15 GSKWLEARATFYGSNPRGAAPDDHGGACGYKDVDKPPFDGMTACGNEPIFKDGLGCRACYEIKC-KEPVECSGEPVLVKITDKNY--------------EHIAAYHFDLSGKAFGAMAKKGQEDKLRKAGELTLQFRRVKCKYPSGTKITFHIEKGSNDHYLALLVKYAAGDGNIVAV 177          
BLAST of DN617686 vs. ExPASy Swiss-Prot
Match: MPAP1_PHLPR (Pollen allergen Phl p 1 OS=Phleum pratense GN=PHLPI PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.585e-11
Identity = 56/179 (31.28%), Postives = 83/179 (46.37%), Query Frame = 2
Query:  122 GGPWQSAHATFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAIL-ITATNFCPPNFAQPSDNGGWCNPPRP-HFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTINGFRYFN----LVLVTNVAGAGDIVRV 613
            G  W  A +T+YG    +G    GGACGY ++    +   T   +T +F +G  CG+CFE+KC   P+ C+ G P ++ IT  N                 P  P HFDL+   F  +A+         AG + + +RRV C+   G + T +  +  N     +LV  V G GD+V V
Sbjct:   38 GDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKC-TKPEACS-GEPVVVHITDDNE---------------EPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKYPEGTKVTFHVEKGSNPNYLALLVKYVNGDGDVVAV 199          
BLAST of DN617686 vs. ExPASy Swiss-Prot
Match: MPAP1_PHAAQ (Major pollen allergen Pha a 1 OS=Phalaris aquatica PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.585e-11
Identity = 55/178 (30.90%), Postives = 80/178 (44.94%), Query Frame = 2
Query:  122 GGPWQSAHATFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRP-HFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTINGFRYFN----LVLVTNVAGAGDIVRV 613
            G  W  A +T+YG    +G    GGACGY ++    +   T   +T +F +G  CG+CFELKC   P+ C+     + IT  N                 P  P HFDL+   F  +A+         AG + + +RRV C+   G + T +  +  N     +LV  V G GD+V V
Sbjct:   44 GDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKAPFNGMTGCGNTPIFKDGRGCGSCFELKC-SKPESCSGEPITVHITDDNE---------------EPIAPYHFDLSGHAFGSMAKKGEEENVRGAGELELQFRRVKCKYPDGTKPTFHVEKGSNPNYLALLVKYVDGDGDVVAV 205          
BLAST of DN617686 vs. ExPASy Swiss-Prot
Match: EXPB2_ARATH (Putative expansin-B2 OS=Arabidopsis thaliana GN=EXPB2 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 8.585e-11
Identity = 55/172 (31.98%), Postives = 81/172 (47.09%), Query Frame = 2
Query:  131 WQSAHATFYGGSDASGTMGGACGYGNLYSQ-GYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLA------QYR-AGIVPVSYRRVPCRKRG-GIRFTINGFRYFN--LVLVTNVAGAGDIVRV 613
            W  A +T+YG     G+ GGACGYGN  +Q  +    +A   +LF +G  CGAC+++KC      C+  NP + +  T+ CP            C     HFDL+   F  +A      Q R  G + + Y++V C   G  + F ++     N   VLV  V G G+I R+
Sbjct:   47 WSIAGSTWYGNPTGYGSDGGACGYGNAVAQPPFSKMVSAGGPSLFKSGKGCGACYQVKCTSKSA-CSK-NP-VTVVITDECP-----------GCVKESVHFDLSGTAFGAMAISGQDSQLRNVGELQILYKKVECNYIGKTVTFQVDKGSNANSFAVLVAYVNGDGEIGRI 204          
The following BLAST results are available for this feature:
BLAST of DN617686 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
EXB10_ORYSJ1.730e-1131.46Expansin-B10 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB8_ORYSJ2.259e-1128.90Expansin-B8 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXLB1_ARATH2.259e-1128.83Expansin-like B1 OS=Arabidopsis thaliana GN=EXLB1 ... [more]
MPAL1_LOLPR2.951e-1131.46Pollen allergen Lol p 1 OS=Lolium perenne PE=1 SV=... [more]
MPAC1_CYNDA3.854e-1129.78Major pollen allergen Cyn d 1 OS=Cynodon dactylon ... [more]
MPAP1_PHLPR8.585e-1131.28Pollen allergen Phl p 1 OS=Phleum pratense GN=PHLP... [more]
MPAP1_PHAAQ8.585e-1130.90Major pollen allergen Pha a 1 OS=Phalaris aquatica... [more]
EXPB2_ARATH8.585e-1131.98Putative expansin-B2 OS=Arabidopsis thaliana GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I21_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617686 ID=DN617686; Name=DN617686; organism=Citrus sinensis; type=EST; length=616bp
CAACTTCTCTGTCTCCCTCTCTTCAACTCCAACAATGGCTCTTTTCAGAA
TGCTCTGCTTTTTCTCACTGGCACTCTCCTTATTTGCGACGGCCAACGCC
AAGATTCCCGGTGTCTTCGCCGGTGGCCCCTGGCAATCGGCCCACGCCAC
TTTTTACGGTGGCAGCGATGCTTCCGGCACTATGGGTGGTGCTTGTGGGT
ACGGGAATCTGTACAGCCAGGGCTACGGAGTGAACACGGCGGCTCTCAGC
ACGGCGCTGTTCAACAACGGCTTGAGCTGCGGCGCGTGCTTCGAGTTAAA
GTGCGGCGGCGACCCGCAGTGGTGTAACCCGGGTAACCCGGCCATTCTGA
TCACGGCCACCAACTTTTGCCCCCCGAACTTCGCTCAGCCCTCCGATAAT
GGCGGGTGGTGCAACCCTCCTCGCCCTCATTTCGATCTGGCCATGCCTAT
GTTCCTCAAGCTTGCCCAGTACCGCGCTGGTATCGTCCCCGTTTCTTACC
GCAGGGTGCCCTGCAGAAAGCGAGGCGGAATCAGATTCACAATTAACGGT
TTCCGTTACTTCAACTTGGTCTTGGTCACCAACGTCGCGGGCGCAGGGGA
TATCGTGCGCGTGAGC
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