DN617684

Overview
NameDN617684
Unique NameDN617684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT4_ARTSX (Actin, clone 403 OS=Artemia sp. PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.410e-17
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  335 ERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT3_PODCA (Actin-3 OS=Podocoryne carnea GN=ACT3 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.410e-17
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  335 ERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT3_LYTPI (Actin, cytoskeletal 3 (Fragment) OS=Lytechinus pictus PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.410e-17
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  131 ERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 172
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT3_LIMPO (Actin-3 OS=Limulus polyphemus PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.410e-17
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  335 ERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT3_BOMMO (Actin, cytoplasmic A3 OS=Bombyx mori PE=3 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 2.410e-17
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  335 ERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT3_ARTSX (Actin, clone 302 (Fragment) OS=Artemia sp. PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.410e-17
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  286 ERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 327
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT3B_HELAM (Actin-A3b, cytoplasmic OS=Helicoverpa armigera GN=actA3b PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.410e-17
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  335 ERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT3A_HELAM (Actin, cytoplasmic A3a OS=Helicoverpa armigera GN=actA3a PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.410e-17
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  335 ERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT2_STRFN (Actin-15B OS=Strongylocentrotus franciscanus PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.410e-17
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  335 ERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT2_SACKO (Actin-2 OS=Saccoglossus kowalevskii PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.410e-17
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  335 ERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
The following BLAST results are available for this feature:
BLAST of DN617684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 326
Match NameE-valueIdentityDescription
ACT4_ARTSX2.410e-1797.62Actin, clone 403 OS=Artemia sp. PE=2 SV=1[more]
ACT3_PODCA2.410e-1797.62Actin-3 OS=Podocoryne carnea GN=ACT3 PE=3 SV=1[more]
ACT3_LYTPI2.410e-1797.62Actin, cytoskeletal 3 (Fragment) OS=Lytechinus pic... [more]
ACT3_LIMPO2.410e-1797.62Actin-3 OS=Limulus polyphemus PE=1 SV=1[more]
ACT3_BOMMO2.410e-1797.62Actin, cytoplasmic A3 OS=Bombyx mori PE=3 SV=3[more]
ACT3_ARTSX2.410e-1797.62Actin, clone 302 (Fragment) OS=Artemia sp. PE=2 SV... [more]
ACT3B_HELAM2.410e-1797.62Actin-A3b, cytoplasmic OS=Helicoverpa armigera GN=... [more]
ACT3A_HELAM2.410e-1797.62Actin, cytoplasmic A3a OS=Helicoverpa armigera GN=... [more]
ACT2_STRFN2.410e-1797.62Actin-15B OS=Strongylocentrotus franciscanus PE=2 ... [more]
ACT2_SACKO2.410e-1797.62Actin-2 OS=Saccoglossus kowalevskii PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I20_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617684 ID=DN617684; Name=DN617684; organism=Citrus sinensis; type=EST; length=577bp
TATTGAATAACCAAATTTATTGACTGCAAGCTGACACTAATTAAAGTTTT
CTCATACAATAGCTATTAACATTAATGTTCCTTTTGAGAGGGGGAGAAAA
AAAACCTTCAAATATGAAAATTTAGAAAATGAAATAGAAAAGCATCACAA
CCACTCTTCATCTCCAGCTACAAACATCCTACTTTAAAAAAAAAAAAGGA
AAAAAAAGAAAAAAGACTTGGTTGAACACCAGATGAATGCAAGGCAAGGA
AGACGGTTGAGTACAGAAATAAGCCCCCCTCAAACGCTGTAAGAAGCTTG
TATAATAACATCAATATCGAGATATGCCTCCTTCAATGGCCCCAACCTTA
GCACTTCTCCATGTCAACCAACTTGAGTTCGCGAAACGAGACACAAAAAA
CCAACTAAATGGAAAAAAAGAACTCACCCATCAAGCACTTAAAGAACTTA
GAAGCATTTCCTGTGGACAATGGATGGACCAGACTCATCATACTCGCCCT
TTGAGATCCACATCTGCTGGAAGGTGCTGAGGGATGCAAGGATTGATCCT
CCAATCCAAACACTGTATTTTCTCTCT
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