DN617684

Overview
NameDN617684
Unique NameDN617684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT_THELA (Actin OS=Thermomyces lanuginosus PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.147e-17
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMW+SK EYDESGPSIVHRKCF
Sbjct:  334 ERKYSVWIGGSILASLSTFQQMWVSKQEYDESGPSIVHRKCF 375
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT_SCHDU (Actin OS=Scherffelia dubia PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.147e-17
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  337 ERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 378
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT_GOSHI (Actin OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.147e-17
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  336 ERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT_CRYNV (Actin OS=Cryptococcus neoformans var. grubii PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.147e-17
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  334 ERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 375
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT_COLSC (Actin OS=Coleochaete scutata PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.147e-17
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  336 ERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 377
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT_CHLRE (Actin OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.147e-17
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  336 ERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 377
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT_ACHBI (Actin OS=Achlya bisexualis PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.147e-17
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSIL+SLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  335 ERKYSVWIGGSILSSLSTFQQMWISKAEYDESGPSIVHRKCF 376
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT6_SOLTU (Actin-71 OS=Solanum tuberosum GN=AC71 PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 3.147e-17
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  336 ERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT4_ARATH (Actin-4 OS=Arabidopsis thaliana GN=ACT4 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.147e-17
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  336 ERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT3_SOLTU (Actin-58 OS=Solanum tuberosum GN=AC58 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.147e-17
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  336 ERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
The following BLAST results are available for this feature:
BLAST of DN617684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 326
Match NameE-valueIdentityDescription
ACT_THELA3.147e-1795.24Actin OS=Thermomyces lanuginosus PE=3 SV=1[more]
ACT_SCHDU3.147e-1795.24Actin OS=Scherffelia dubia PE=2 SV=1[more]
ACT_GOSHI3.147e-1795.24Actin OS=Gossypium hirsutum PE=3 SV=1[more]
ACT_CRYNV3.147e-1795.24Actin OS=Cryptococcus neoformans var. grubii PE=3 ... [more]
ACT_COLSC3.147e-1795.24Actin OS=Coleochaete scutata PE=2 SV=1[more]
ACT_CHLRE3.147e-1795.24Actin OS=Chlamydomonas reinhardtii PE=2 SV=1[more]
ACT_ACHBI3.147e-1795.24Actin OS=Achlya bisexualis PE=3 SV=1[more]
ACT6_SOLTU3.147e-1795.24Actin-71 OS=Solanum tuberosum GN=AC71 PE=3 SV=2[more]
ACT4_ARATH3.147e-1795.24Actin-4 OS=Arabidopsis thaliana GN=ACT4 PE=1 SV=1[more]
ACT3_SOLTU3.147e-1795.24Actin-58 OS=Solanum tuberosum GN=AC58 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I20_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617684 ID=DN617684; Name=DN617684; organism=Citrus sinensis; type=EST; length=577bp
TATTGAATAACCAAATTTATTGACTGCAAGCTGACACTAATTAAAGTTTT
CTCATACAATAGCTATTAACATTAATGTTCCTTTTGAGAGGGGGAGAAAA
AAAACCTTCAAATATGAAAATTTAGAAAATGAAATAGAAAAGCATCACAA
CCACTCTTCATCTCCAGCTACAAACATCCTACTTTAAAAAAAAAAAAGGA
AAAAAAAGAAAAAAGACTTGGTTGAACACCAGATGAATGCAAGGCAAGGA
AGACGGTTGAGTACAGAAATAAGCCCCCCTCAAACGCTGTAAGAAGCTTG
TATAATAACATCAATATCGAGATATGCCTCCTTCAATGGCCCCAACCTTA
GCACTTCTCCATGTCAACCAACTTGAGTTCGCGAAACGAGACACAAAAAA
CCAACTAAATGGAAAAAAAGAACTCACCCATCAAGCACTTAAAGAACTTA
GAAGCATTTCCTGTGGACAATGGATGGACCAGACTCATCATACTCGCCCT
TTGAGATCCACATCTGCTGGAAGGTGCTGAGGGATGCAAGGATTGATCCT
CCAATCCAAACACTGTATTTTCTCTCT
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