DN617684

Overview
NameDN617684
Unique NameDN617684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACTS_MOUSE (Actin, alpha skeletal muscle OS=Mus musculus GN=Acta1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.196e-16
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWI+K EYDE+GPSIVHRKCF
Sbjct:  336 ERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACTS_HUMAN (Actin, alpha skeletal muscle OS=Homo sapiens GN=ACTA1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.196e-16
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWI+K EYDE+GPSIVHRKCF
Sbjct:  336 ERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACTS_CYPCA (Actin, alpha skeletal muscle OS=Cyprinus carpio GN=acta1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.196e-16
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWI+K EYDE+GPSIVHRKCF
Sbjct:  336 ERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACTS_CHICK (Actin, alpha skeletal muscle OS=Gallus gallus GN=ACTA1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.196e-16
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWI+K EYDE+GPSIVHRKCF
Sbjct:  336 ERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACTS_CARAU (Actin, alpha skeletal muscle OS=Carassius auratus GN=acta1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.196e-16
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWI+K EYDE+GPSIVHRKCF
Sbjct:  336 ERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACTS_BOVIN (Actin, alpha skeletal muscle OS=Bos taurus GN=ACTA1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.196e-16
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWI+K EYDE+GPSIVHRKCF
Sbjct:  336 ERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACTS_ATRMM (Actin, alpha skeletal muscle OS=Atractaspis microlepidota microlepidota GN=ACTA1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.196e-16
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWI+K EYDE+GPSIVHRKCF
Sbjct:  336 ERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACTM_CIOSA (Actin, muscle OS=Ciona savignyi PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.196e-16
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWI+K EYDE+GPSIVHRKCF
Sbjct:  337 ERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF 378
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACTB_XENBO (Actin, cytoplasmic 1 OS=Xenopus borealis GN=actb PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.196e-16
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILA LSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  335 ERKYSVWIGGSILALLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT3_XENLA (Actin, alpha sarcomeric/skeletal OS=Xenopus laevis PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.196e-16
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWI+K EYDE+GPSIVHRKCF
Sbjct:  336 ERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF 377
The following BLAST results are available for this feature:
BLAST of DN617684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 326
Match NameE-valueIdentityDescription
ACTS_MOUSE1.196e-1692.86Actin, alpha skeletal muscle OS=Mus musculus GN=Ac... [more]
ACTS_HUMAN1.196e-1692.86Actin, alpha skeletal muscle OS=Homo sapiens GN=AC... [more]
ACTS_CYPCA1.196e-1692.86Actin, alpha skeletal muscle OS=Cyprinus carpio GN... [more]
ACTS_CHICK1.196e-1692.86Actin, alpha skeletal muscle OS=Gallus gallus GN=A... [more]
ACTS_CARAU1.196e-1692.86Actin, alpha skeletal muscle OS=Carassius auratus ... [more]
ACTS_BOVIN1.196e-1692.86Actin, alpha skeletal muscle OS=Bos taurus GN=ACTA... [more]
ACTS_ATRMM1.196e-1692.86Actin, alpha skeletal muscle OS=Atractaspis microl... [more]
ACTM_CIOSA1.196e-1692.86Actin, muscle OS=Ciona savignyi PE=2 SV=1[more]
ACTB_XENBO1.196e-1695.24Actin, cytoplasmic 1 OS=Xenopus borealis GN=actb P... [more]
ACT3_XENLA1.196e-1692.86Actin, alpha sarcomeric/skeletal OS=Xenopus laevis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I20_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617684 ID=DN617684; Name=DN617684; organism=Citrus sinensis; type=EST; length=577bp
TATTGAATAACCAAATTTATTGACTGCAAGCTGACACTAATTAAAGTTTT
CTCATACAATAGCTATTAACATTAATGTTCCTTTTGAGAGGGGGAGAAAA
AAAACCTTCAAATATGAAAATTTAGAAAATGAAATAGAAAAGCATCACAA
CCACTCTTCATCTCCAGCTACAAACATCCTACTTTAAAAAAAAAAAAGGA
AAAAAAAGAAAAAAGACTTGGTTGAACACCAGATGAATGCAAGGCAAGGA
AGACGGTTGAGTACAGAAATAAGCCCCCCTCAAACGCTGTAAGAAGCTTG
TATAATAACATCAATATCGAGATATGCCTCCTTCAATGGCCCCAACCTTA
GCACTTCTCCATGTCAACCAACTTGAGTTCGCGAAACGAGACACAAAAAA
CCAACTAAATGGAAAAAAAGAACTCACCCATCAAGCACTTAAAGAACTTA
GAAGCATTTCCTGTGGACAATGGATGGACCAGACTCATCATACTCGCCCT
TTGAGATCCACATCTGCTGGAAGGTGCTGAGGGATGCAAGGATTGATCCT
CCAATCCAAACACTGTATTTTCTCTCT
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