DN617684

Overview
NameDN617684
Unique NameDN617684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT2_XENTR (Actin, alpha sarcomeric/cardiac OS=Xenopus tropicalis PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.196e-16
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWI+K EYDE+GPSIVHRKCF
Sbjct:  336 ERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT2_XENLA (Actin, alpha sarcomeric/cardiac OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.196e-16
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWI+K EYDE+GPSIVHRKCF
Sbjct:  336 ERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT2_PEA (Actin-2 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.196e-16
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ER+YSVWIGGSILASLSTFQQMWISK EYDE GPSIVHRKCF
Sbjct:  335 ERRYSVWIGGSILASLSTFQQMWISKAEYDERGPSIVHRKCF 376
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT1_PLAYO (Actin-1 OS=Plasmodium yoelii yoelii GN=PY02240 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.196e-16
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSIL+SLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  335 ERKYSVWIGGSILSSLSTFQQMWITKEEYDESGPSIVHRKCF 376
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT1_PLAFX (Actin-1 OS=Plasmodium falciparum (isolate HB3) PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.196e-16
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSIL+SLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  335 ERKYSVWIGGSILSSLSTFQQMWITKEEYDESGPSIVHRKCF 376
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT1_PLAFO (Actin-1 OS=Plasmodium falciparum (isolate NF54) PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.196e-16
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSIL+SLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  335 ERKYSVWIGGSILSSLSTFQQMWITKEEYDESGPSIVHRKCF 376
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT1_PLAF7 (Actin-1 OS=Plasmodium falciparum (isolate 3D7) GN=PFL2215w PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.196e-16
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSIL+SLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  335 ERKYSVWIGGSILSSLSTFQQMWITKEEYDESGPSIVHRKCF 376
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT1_PLABA (Actin-1 OS=Plasmodium berghei (strain Anka) GN=PB000323.01.0 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.196e-16
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSIL+SLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  334 ERKYSVWIGGSILSSLSTFQQMWITKEEYDESGPSIVHRKCF 375
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT1_HALRO (Actin, muscle 1A OS=Halocynthia roretzi GN=MA1A PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.196e-16
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWI+K EYDE+GPSIVHRKCF
Sbjct:  337 ERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF 378
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT17_DICDI (Actin-17 OS=Dictyostelium discoideum GN=act17 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.196e-16
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGS+L+SLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  333 ERKYSVWIGGSMLSSLSTFQQMWISKEEYDESGPSIVHRKCF 374
The following BLAST results are available for this feature:
BLAST of DN617684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 326
Match NameE-valueIdentityDescription
ACT2_XENTR1.196e-1692.86Actin, alpha sarcomeric/cardiac OS=Xenopus tropica... [more]
ACT2_XENLA1.196e-1692.86Actin, alpha sarcomeric/cardiac OS=Xenopus laevis ... [more]
ACT2_PEA1.196e-1692.86Actin-2 OS=Pisum sativum PE=2 SV=1[more]
ACT1_PLAYO1.196e-1692.86Actin-1 OS=Plasmodium yoelii yoelii GN=PY02240 PE=... [more]
ACT1_PLAFX1.196e-1692.86Actin-1 OS=Plasmodium falciparum (isolate HB3) PE=... [more]
ACT1_PLAFO1.196e-1692.86Actin-1 OS=Plasmodium falciparum (isolate NF54) PE... [more]
ACT1_PLAF71.196e-1692.86Actin-1 OS=Plasmodium falciparum (isolate 3D7) GN=... [more]
ACT1_PLABA1.196e-1692.86Actin-1 OS=Plasmodium berghei (strain Anka) GN=PB0... [more]
ACT1_HALRO1.196e-1692.86Actin, muscle 1A OS=Halocynthia roretzi GN=MA1A PE... [more]
ACT17_DICDI1.196e-1692.86Actin-17 OS=Dictyostelium discoideum GN=act17 PE=3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I20_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617684 ID=DN617684; Name=DN617684; organism=Citrus sinensis; type=EST; length=577bp
TATTGAATAACCAAATTTATTGACTGCAAGCTGACACTAATTAAAGTTTT
CTCATACAATAGCTATTAACATTAATGTTCCTTTTGAGAGGGGGAGAAAA
AAAACCTTCAAATATGAAAATTTAGAAAATGAAATAGAAAAGCATCACAA
CCACTCTTCATCTCCAGCTACAAACATCCTACTTTAAAAAAAAAAAAGGA
AAAAAAAGAAAAAAGACTTGGTTGAACACCAGATGAATGCAAGGCAAGGA
AGACGGTTGAGTACAGAAATAAGCCCCCCTCAAACGCTGTAAGAAGCTTG
TATAATAACATCAATATCGAGATATGCCTCCTTCAATGGCCCCAACCTTA
GCACTTCTCCATGTCAACCAACTTGAGTTCGCGAAACGAGACACAAAAAA
CCAACTAAATGGAAAAAAAGAACTCACCCATCAAGCACTTAAAGAACTTA
GAAGCATTTCCTGTGGACAATGGATGGACCAGACTCATCATACTCGCCCT
TTGAGATCCACATCTGCTGGAAGGTGCTGAGGGATGCAAGGATTGATCCT
CCAATCCAAACACTGTATTTTCTCTCT
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