DN617684

Overview
NameDN617684
Unique NameDN617684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT_PINCO (Actin (Fragment) OS=Pinus contorta PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.562e-16
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWI+K EY+ESGPSIVHRKCF
Sbjct:  120 ERKYSVWIGGSILASLSTFQQMWIAKTEYEESGPSIVHRKCF 161
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT_MESVI (Actin OS=Mesostigma viride PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.562e-16
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQ MWI+K EYDESGPSIVHRKCF
Sbjct:  336 ERKYSVWIGGSILASLSTFQAMWIAKSEYDESGPSIVHRKCF 377
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT6_DIPDE (Actin-6 (Fragment) OS=Diphyllobothrium dendriticum GN=ACT6 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.562e-16
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSIL SLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  332 ERKYSVWIGGSILGSLSTFQQMWITKQEYDESGPSIVHRKCF 373
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT1_PHYIN (Actin-1 OS=Phytophthora infestans GN=ACTA PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.562e-16
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSI +SLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  335 ERKYSVWIGGSIQSSLSTFQQMWISKAEYDESGPSIVHRKCF 376
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT_YEAST (Actin OS=Saccharomyces cerevisiae GN=ACT1 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.040e-16
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASL+TFQQMWISK EYDESGPSIVH KCF
Sbjct:  334 ERKYSVWIGGSILASLTTFQQMWISKQEYDESGPSIVHHKCF 375
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT_TRIRE (Actin OS=Trichoderma reesei GN=act PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.040e-16
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASL+TFQQMWISK EYDESGPSIVH KCF
Sbjct:  335 ERKYSVWIGGSILASLTTFQQMWISKQEYDESGPSIVHHKCF 376
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT_SACBA (Actin OS=Saccharomyces bayanus GN=ACT1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.040e-16
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASL+TFQQMWISK EYDESGPSIVH KCF
Sbjct:  334 ERKYSVWIGGSILASLTTFQQMWISKQEYDESGPSIVHHKCF 375
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT_PHARH (Actin OS=Phaffia rhodozyma PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.040e-16
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQ MWISK EYDE+GPSIVHRKCF
Sbjct:  334 ERKYSVWIGGSILASLSTFQSMWISKQEYDEAGPSIVHRKCF 375
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT_CANGA (Actin OS=Candida glabrata GN=ACT1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.040e-16
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASL+TFQQMWISK EYDESGPSIVH KCF
Sbjct:  334 ERKYSVWIGGSILASLTTFQQMWISKQEYDESGPSIVHHKCF 375
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT_ASHGO (Actin OS=Ashbya gossypii GN=ACT1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.040e-16
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASL+TFQQMWISK EYDESGPSIVH KCF
Sbjct:  335 ERKYSVWIGGSILASLTTFQQMWISKQEYDESGPSIVHHKCF 376
The following BLAST results are available for this feature:
BLAST of DN617684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 326
Match NameE-valueIdentityDescription
ACT_PINCO1.562e-1692.86Actin (Fragment) OS=Pinus contorta PE=3 SV=1[more]
ACT_MESVI1.562e-1692.86Actin OS=Mesostigma viride PE=3 SV=1[more]
ACT6_DIPDE1.562e-1692.86Actin-6 (Fragment) OS=Diphyllobothrium dendriticum... [more]
ACT1_PHYIN1.562e-1692.86Actin-1 OS=Phytophthora infestans GN=ACTA PE=2 SV=... [more]
ACT_YEAST2.040e-1692.86Actin OS=Saccharomyces cerevisiae GN=ACT1 PE=1 SV=... [more]
ACT_TRIRE2.040e-1692.86Actin OS=Trichoderma reesei GN=act PE=3 SV=1[more]
ACT_SACBA2.040e-1692.86Actin OS=Saccharomyces bayanus GN=ACT1 PE=3 SV=1[more]
ACT_PHARH2.040e-1692.86Actin OS=Phaffia rhodozyma PE=3 SV=1[more]
ACT_CANGA2.040e-1692.86Actin OS=Candida glabrata GN=ACT1 PE=3 SV=1[more]
ACT_ASHGO2.040e-1692.86Actin OS=Ashbya gossypii GN=ACT1 PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01I20_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617684 ID=DN617684; Name=DN617684; organism=Citrus sinensis; type=EST; length=577bp
TATTGAATAACCAAATTTATTGACTGCAAGCTGACACTAATTAAAGTTTT
CTCATACAATAGCTATTAACATTAATGTTCCTTTTGAGAGGGGGAGAAAA
AAAACCTTCAAATATGAAAATTTAGAAAATGAAATAGAAAAGCATCACAA
CCACTCTTCATCTCCAGCTACAAACATCCTACTTTAAAAAAAAAAAAGGA
AAAAAAAGAAAAAAGACTTGGTTGAACACCAGATGAATGCAAGGCAAGGA
AGACGGTTGAGTACAGAAATAAGCCCCCCTCAAACGCTGTAAGAAGCTTG
TATAATAACATCAATATCGAGATATGCCTCCTTCAATGGCCCCAACCTTA
GCACTTCTCCATGTCAACCAACTTGAGTTCGCGAAACGAGACACAAAAAA
CCAACTAAATGGAAAAAAAGAACTCACCCATCAAGCACTTAAAGAACTTA
GAAGCATTTCCTGTGGACAATGGATGGACCAGACTCATCATACTCGCCCT
TTGAGATCCACATCTGCTGGAAGGTGCTGAGGGATGCAAGGATTGATCCT
CCAATCCAAACACTGTATTTTCTCTCT
back to top