DN617684

Overview
NameDN617684
Unique NameDN617684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACTBL_MOUSE (Beta-actin-like protein 2 OS=Mus musculus GN=Actbl2 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.040e-16
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWISK EYDE+GP IVHRKCF
Sbjct:  335 ERKYSVWIGGSILASLSTFQQMWISKQEYDEAGPPIVHRKCF 376
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACTBL_HUMAN (Beta-actin-like protein 2 OS=Homo sapiens GN=ACTBL2 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.040e-16
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWISK EYDE+GP IVHRKCF
Sbjct:  335 ERKYSVWIGGSILASLSTFQQMWISKQEYDEAGPPIVHRKCF 376
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT7_ORYSJ (Actin-7 OS=Oryza sativa subsp. japonica GN=ACT7 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.040e-16
Identity = 39/42 (92.86%), Postives = 39/42 (92.86%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWISK EYDESGP IVH KCF
Sbjct:  335 ERKYSVWIGGSILASLSTFQQMWISKAEYDESGPGIVHMKCF 376
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT7_ORYSI (Actin-7 OS=Oryza sativa subsp. indica GN=ACT7 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.040e-16
Identity = 39/42 (92.86%), Postives = 39/42 (92.86%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWISK EYDESGP IVH KCF
Sbjct:  335 ERKYSVWIGGSILASLSTFQQMWISKAEYDESGPGIVHMKCF 376
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT2_PHYIN (Actin-2 OS=Phytophthora infestans GN=ACTB PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.040e-16
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASL+TFQ MWISK EYDESGPSIVHRKCF
Sbjct:  334 ERKYSVWIGGSILASLATFQHMWISKTEYDESGPSIVHRKCF 375
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT2_ORYSJ (Actin-2 OS=Oryza sativa subsp. japonica GN=ACT2 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.040e-16
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWIS+ EY+ESGP+IVHRKCF
Sbjct:  336 ERKYSVWIGGSILASLSTFQQMWISRAEYEESGPAIVHRKCF 377
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT2_ORYSI (Actin-2 OS=Oryza sativa subsp. indica GN=ACT2 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.040e-16
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWIS+ EY+ESGP+IVHRKCF
Sbjct:  336 ERKYSVWIGGSILASLSTFQQMWISRAEYEESGPAIVHRKCF 377
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACTM_STYPL (Actin, muscle OS=Styela plicata PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.664e-16
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIG SILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  338 ERKYSVWIGASILASLSTFQQMWITKQEYDESGPSIVHRKCF 379
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT1_PNECA (Actin-1 OS=Pneumocystis carinii PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.664e-16
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWISK EYDE+GPSIV+RKCF
Sbjct:  334 ERKYSVWIGGSILASLSTFQQMWISKQEYDENGPSIVYRKCF 375
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT1_AEDAE (Actin-1 OS=Aedes aegypti GN=ACT-1 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 2.664e-16
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQ MWISK EYDESGP+IVHRKCF
Sbjct:  335 ERKYSVWIGGSILASLSTFQAMWISKQEYDESGPAIVHRKCF 376
The following BLAST results are available for this feature:
BLAST of DN617684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 326
Match NameE-valueIdentityDescription
ACTBL_MOUSE2.040e-1692.86Beta-actin-like protein 2 OS=Mus musculus GN=Actbl... [more]
ACTBL_HUMAN2.040e-1692.86Beta-actin-like protein 2 OS=Homo sapiens GN=ACTBL... [more]
ACT7_ORYSJ2.040e-1692.86Actin-7 OS=Oryza sativa subsp. japonica GN=ACT7 PE... [more]
ACT7_ORYSI2.040e-1692.86Actin-7 OS=Oryza sativa subsp. indica GN=ACT7 PE=3... [more]
ACT2_PHYIN2.040e-1692.86Actin-2 OS=Phytophthora infestans GN=ACTB PE=2 SV=... [more]
ACT2_ORYSJ2.040e-1690.48Actin-2 OS=Oryza sativa subsp. japonica GN=ACT2 PE... [more]
ACT2_ORYSI2.040e-1690.48Actin-2 OS=Oryza sativa subsp. indica GN=ACT2 PE=3... [more]
ACTM_STYPL2.664e-1692.86Actin, muscle OS=Styela plicata PE=3 SV=1[more]
ACT1_PNECA2.664e-1692.86Actin-1 OS=Pneumocystis carinii PE=2 SV=1[more]
ACT1_AEDAE2.664e-1692.86Actin-1 OS=Aedes aegypti GN=ACT-1 PE=2 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01I20_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617684 ID=DN617684; Name=DN617684; organism=Citrus sinensis; type=EST; length=577bp
TATTGAATAACCAAATTTATTGACTGCAAGCTGACACTAATTAAAGTTTT
CTCATACAATAGCTATTAACATTAATGTTCCTTTTGAGAGGGGGAGAAAA
AAAACCTTCAAATATGAAAATTTAGAAAATGAAATAGAAAAGCATCACAA
CCACTCTTCATCTCCAGCTACAAACATCCTACTTTAAAAAAAAAAAAGGA
AAAAAAAGAAAAAAGACTTGGTTGAACACCAGATGAATGCAAGGCAAGGA
AGACGGTTGAGTACAGAAATAAGCCCCCCTCAAACGCTGTAAGAAGCTTG
TATAATAACATCAATATCGAGATATGCCTCCTTCAATGGCCCCAACCTTA
GCACTTCTCCATGTCAACCAACTTGAGTTCGCGAAACGAGACACAAAAAA
CCAACTAAATGGAAAAAAAGAACTCACCCATCAAGCACTTAAAGAACTTA
GAAGCATTTCCTGTGGACAATGGATGGACCAGACTCATCATACTCGCCCT
TTGAGATCCACATCTGCTGGAAGGTGCTGAGGGATGCAAGGATTGATCCT
CCAATCCAAACACTGTATTTTCTCTCT
back to top