DN617684

Overview
NameDN617684
Unique NameDN617684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT_SCHPO (Actin OS=Schizosaccharomyces pombe GN=act1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.480e-16
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = -2
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWISK EYDESGP IV+RKCF
Sbjct:  334 ERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375          
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT_KLULA (Actin OS=Kluyveromyces lactis GN=ACT PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 3.480e-16
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = -2
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASL+TFQQMWISK EYDESGPSIVH KCF
Sbjct:  334 ERKYSVWIGGSILASLTTFQQMWISKQEYDESGPSIVHLKCF 375          
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT_ENCCU (Actin OS=Encephalitozoon cuniculi GN=ECU01_0460 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 3.480e-16
Identity = 38/42 (90.48%), Postives = 39/42 (92.86%), Query Frame = -2
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMW+SK EY E GPSIVHRKCF
Sbjct:  334 ERKYSVWIGGSILASLSTFQQMWVSKAEYQEHGPSIVHRKCF 375          
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT2_PLAYO (Actin-2 OS=Plasmodium yoelii yoelii GN=PY01545 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.480e-16
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = -2
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSIL+SLSTFQ+MWI+K EYDESGPSIVHRKCF
Sbjct:  335 ERKYSVWIGGSILSSLSTFQKMWITKEEYDESGPSIVHRKCF 376          
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT2_PLABA (Actin-2 OS=Plasmodium berghei (strain Anka) GN=PB001050.02.0 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.480e-16
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = -2
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSIL+SLSTFQ+MWI+K EYDESGPSIVHRKCF
Sbjct:  335 ERKYSVWIGGSILSSLSTFQKMWITKEEYDESGPSIVHRKCF 376          
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT1_MAIZE (Actin-1 OS=Zea mays GN=ACT1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.480e-16
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = -2
Query:  451 RKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 573
            RKYSVWIGGSILASLSTFQQMWISKGEYDE+GP IVH KCF
Sbjct:  335 RKYSVWIGGSILASLSTFQQMWISKGEYDETGPGIVHMKCF 375          
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: POTEF_HUMAN (POTE ankyrin domain family member F OS=Homo sapiens GN=POTEF PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 4.545e-16
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = -2
Query:  454 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 576
            +RKYSVW+GGSILASLSTFQQMWISK EYDESGPSIVHRKC
Sbjct: 1034 KRKYSVWVGGSILASLSTFQQMWISKQEYDESGPSIVHRKC 1074          
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT_PICPG (Actin OS=Pichia pastoris (strain GS115) GN=ACT1 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.545e-16
Identity = 39/42 (92.86%), Postives = 39/42 (92.86%), Query Frame = -2
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASL TFQQMWISK EYDESGPSIVH KCF
Sbjct:  335 ERKYSVWIGGSILASLGTFQQMWISKQEYDESGPSIVHLKCF 376          
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT_PHYME (Actin OS=Phytophthora megasperma PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.545e-16
Identity = 38/42 (90.48%), Postives = 40/42 (95.24%), Query Frame = -2
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASL+TFQ MWISK +YDESGPSIVHRKCF
Sbjct:  334 ERKYSVWIGGSILASLATFQHMWISKTDYDESGPSIVHRKCF 375          
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT_ENTHI (Actin OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.545e-16
Identity = 38/42 (90.48%), Postives = 40/42 (95.24%), Query Frame = -2
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQ MWI+K EYDESGP+IVHRKCF
Sbjct:  335 ERKYSVWIGGSILASLSTFQNMWITKEEYDESGPAIVHRKCF 376          
The following BLAST results are available for this feature:
BLAST of DN617684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 326
Match NameE-valueIdentityDescription
ACT_SCHPO3.480e-1692.86Actin OS=Schizosaccharomyces pombe GN=act1 PE=1 SV... [more]
ACT_KLULA3.480e-1692.86Actin OS=Kluyveromyces lactis GN=ACT PE=3 SV=2[more]
ACT_ENCCU3.480e-1690.48Actin OS=Encephalitozoon cuniculi GN=ECU01_0460 PE... [more]
ACT2_PLAYO3.480e-1690.48Actin-2 OS=Plasmodium yoelii yoelii GN=PY01545 PE=... [more]
ACT2_PLABA3.480e-1690.48Actin-2 OS=Plasmodium berghei (strain Anka) GN=PB0... [more]
ACT1_MAIZE3.480e-1692.68Actin-1 OS=Zea mays GN=ACT1 PE=3 SV=1[more]
POTEF_HUMAN4.545e-1692.68POTE ankyrin domain family member F OS=Homo sapien... [more]
ACT_PICPG4.545e-1692.86Actin OS=Pichia pastoris (strain GS115) GN=ACT1 PE... [more]
ACT_PHYME4.545e-1690.48Actin OS=Phytophthora megasperma PE=3 SV=1[more]
ACT_ENTHI4.545e-1690.48Actin OS=Entamoeba histolytica PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I20_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617684 ID=DN617684; Name=DN617684; organism=Citrus sinensis; type=EST; length=577bp
TATTGAATAACCAAATTTATTGACTGCAAGCTGACACTAATTAAAGTTTT
CTCATACAATAGCTATTAACATTAATGTTCCTTTTGAGAGGGGGAGAAAA
AAAACCTTCAAATATGAAAATTTAGAAAATGAAATAGAAAAGCATCACAA
CCACTCTTCATCTCCAGCTACAAACATCCTACTTTAAAAAAAAAAAAGGA
AAAAAAAGAAAAAAGACTTGGTTGAACACCAGATGAATGCAAGGCAAGGA
AGACGGTTGAGTACAGAAATAAGCCCCCCTCAAACGCTGTAAGAAGCTTG
TATAATAACATCAATATCGAGATATGCCTCCTTCAATGGCCCCAACCTTA
GCACTTCTCCATGTCAACCAACTTGAGTTCGCGAAACGAGACACAAAAAA
CCAACTAAATGGAAAAAAAGAACTCACCCATCAAGCACTTAAAGAACTTA
GAAGCATTTCCTGTGGACAATGGATGGACCAGACTCATCATACTCGCCCT
TTGAGATCCACATCTGCTGGAAGGTGCTGAGGGATGCAAGGATTGATCCT
CCAATCCAAACACTGTATTTTCTCTCT
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