DN617684

Overview
NameDN617684
Unique NameDN617684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT2_ECHGR (Actin-2 OS=Echinococcus granulosus GN=ACTII PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.545e-16
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWISK EY+E GPSIVHRKCF
Sbjct:  335 ERKYSVWIGGSILASLSTFQQMWISKVEYEEIGPSIVHRKCF 376
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACTM_MOLOC (Actin, larval muscle-type OS=Molgula oculata PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.936e-16
Identity = 37/42 (88.10%), Postives = 40/42 (95.24%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSIL+SLSTF QMWI+K EYDE+GPSIVHRKCF
Sbjct:  337 ERKYSVWIGGSILSSLSTFNQMWITKAEYDEAGPSIVHRKCF 378
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT_YARLI (Actin OS=Yarrowia lipolytica GN=ACT1 PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 7.752e-16
Identity = 37/42 (88.10%), Postives = 40/42 (95.24%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASL TFQQMWISK EYDE+GP+IVHRKC+
Sbjct:  334 ERKYSVWIGGSILASLGTFQQMWISKQEYDEAGPTIVHRKCY 375
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT_PROCL (Actin (Fragment) OS=Procambarus clarkii PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.752e-16
Identity = 38/42 (90.48%), Postives = 39/42 (92.86%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQ MWI+K EYDESGP IVHRKCF
Sbjct:  281 ERKYSVWIGGSILASLSTFQTMWITKEEYDESGPGIVHRKCF 322
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT_ACECL (Actin (Fragment) OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.752e-16
Identity = 37/42 (88.10%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERK+SVWIGGSIL+SLSTFQQMWISK EYDE+GP+IVHRKCF
Sbjct:  312 ERKFSVWIGGSILSSLSTFQQMWISKEEYDEAGPAIVHRKCF 353
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACTB_STRPU (Actin, cytoskeletal 1B OS=Strongylocentrotus purpuratus GN=CYIB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.752e-16
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSV IGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  335 ERKYSVCIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT2_TETPY (Actin, cytoplasmic OS=Tetrahymena pyriformis PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 7.752e-16
Identity = 37/42 (88.10%), Postives = 40/42 (95.24%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ER+YSVWIGGSIL+SLSTFQ MWI+K EYDESGPSIVHRKCF
Sbjct:  335 ERRYSVWIGGSILSSLSTFQTMWITKAEYDESGPSIVHRKCF 376
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT2_PLAFX (Actin-2 OS=Plasmodium falciparum (isolate HB3) PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.752e-16
Identity = 37/42 (88.10%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSIL+SLSTFQQMWI+K EY++SGPSIVHRKCF
Sbjct:  335 ERKYSVWIGGSILSSLSTFQQMWITKEEYEDSGPSIVHRKCF 376
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT2_PLAFO (Actin-2 OS=Plasmodium falciparum (isolate NF54) PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.752e-16
Identity = 37/42 (88.10%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSIL+SLSTFQQMWI+K EY++SGPSIVHRKCF
Sbjct:  335 ERKYSVWIGGSILSSLSTFQQMWITKEEYEDSGPSIVHRKCF 376
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT2_PLAF7 (Actin-2 OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0124 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.752e-16
Identity = 37/42 (88.10%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSIL+SLSTFQQMWI+K EY++SGPSIVHRKCF
Sbjct:  335 ERKYSVWIGGSILSSLSTFQQMWITKEEYEDSGPSIVHRKCF 376
The following BLAST results are available for this feature:
BLAST of DN617684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 326
Match NameE-valueIdentityDescription
ACT2_ECHGR4.545e-1692.86Actin-2 OS=Echinococcus granulosus GN=ACTII PE=3 S... [more]
ACTM_MOLOC5.936e-1688.10Actin, larval muscle-type OS=Molgula oculata PE=3 ... [more]
ACT_YARLI7.752e-1688.10Actin OS=Yarrowia lipolytica GN=ACT1 PE=3 SV=2[more]
ACT_PROCL7.752e-1690.48Actin (Fragment) OS=Procambarus clarkii PE=1 SV=1[more]
ACT_ACECL7.752e-1688.10Actin (Fragment) OS=Acetabularia cliftonii PE=3 SV... [more]
ACTB_STRPU7.752e-1695.24Actin, cytoskeletal 1B OS=Strongylocentrotus purpu... [more]
ACT2_TETPY7.752e-1688.10Actin, cytoplasmic OS=Tetrahymena pyriformis PE=3 ... [more]
ACT2_PLAFX7.752e-1688.10Actin-2 OS=Plasmodium falciparum (isolate HB3) PE=... [more]
ACT2_PLAFO7.752e-1688.10Actin-2 OS=Plasmodium falciparum (isolate NF54) PE... [more]
ACT2_PLAF77.752e-1688.10Actin-2 OS=Plasmodium falciparum (isolate 3D7) GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I20_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617684 ID=DN617684; Name=DN617684; organism=Citrus sinensis; type=EST; length=577bp
TATTGAATAACCAAATTTATTGACTGCAAGCTGACACTAATTAAAGTTTT
CTCATACAATAGCTATTAACATTAATGTTCCTTTTGAGAGGGGGAGAAAA
AAAACCTTCAAATATGAAAATTTAGAAAATGAAATAGAAAAGCATCACAA
CCACTCTTCATCTCCAGCTACAAACATCCTACTTTAAAAAAAAAAAAGGA
AAAAAAAGAAAAAAGACTTGGTTGAACACCAGATGAATGCAAGGCAAGGA
AGACGGTTGAGTACAGAAATAAGCCCCCCTCAAACGCTGTAAGAAGCTTG
TATAATAACATCAATATCGAGATATGCCTCCTTCAATGGCCCCAACCTTA
GCACTTCTCCATGTCAACCAACTTGAGTTCGCGAAACGAGACACAAAAAA
CCAACTAAATGGAAAAAAAGAACTCACCCATCAAGCACTTAAAGAACTTA
GAAGCATTTCCTGTGGACAATGGATGGACCAGACTCATCATACTCGCCCT
TTGAGATCCACATCTGCTGGAAGGTGCTGAGGGATGCAAGGATTGATCCT
CCAATCCAAACACTGTATTTTCTCTCT
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