DN617684

Overview
NameDN617684
Unique NameDN617684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT1_TETTH (Actin, macronuclear OS=Tetrahymena thermophila PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 7.752e-16
Identity = 37/42 (88.10%), Postives = 40/42 (95.24%), Query Frame = -2
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ER+YSVWIGGSIL+SLSTFQ MWI+K EYDESGPSIVHRKCF
Sbjct:  335 ERRYSVWIGGSILSSLSTFQTMWITKAEYDESGPSIVHRKCF 376          
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT1_DAUCA (Actin-1 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.752e-16
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = -2
Query:  454 ERKYS-VWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 576
            ERKYS +WIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC
Sbjct:  335 ERKYSDLWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 376          
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT_CHOCR (Actin OS=Chondrus crispus GN=AC PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.012e-15
Identity = 36/42 (85.71%), Postives = 40/42 (95.24%), Query Frame = -2
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ER+YSVWIGGSIL+SLSTFQQMW+SK EYDE GPS+VHRKCF
Sbjct:  332 ERQYSVWIGGSILSSLSTFQQMWVSKTEYDEMGPSVVHRKCF 373          
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT1_SOYBN (Actin-1 OS=Glycine max GN=SAC1 PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.012e-15
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = -2
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERK+ VWIGGSILASLSTFQQMWI K EYDESGPSIVH+KCF
Sbjct:  336 ERKFGVWIGGSILASLSTFQQMWIXKAEYDESGPSIVHKKCF 377          
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT25_DICDI (Putative actin-25 OS=Dictyostelium discoideum GN=act25 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.727e-15
Identity = 38/42 (90.48%), Postives = 39/42 (92.86%), Query Frame = -2
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLS+FQ  WISK EYDESGPSIVHRKCF
Sbjct:  344 ERKYSVWIGGSILASLSSFQPRWISKEEYDESGPSIVHRKCF 385          
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT_COPC7 (Actin OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=ACT1 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.256e-15
Identity = 37/42 (88.10%), Postives = 38/42 (90.48%), Query Frame = -2
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQ +W SK EYDESGP IVHRKCF
Sbjct:  334 ERKYSVWIGGSILASLSTFQNLWCSKQEYDESGPGIVHRKCF 375          
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT2_SUIBO (Actin-2 OS=Suillus bovinus GN=ACT2 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.256e-15
Identity = 37/42 (88.10%), Postives = 38/42 (90.48%), Query Frame = -2
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQ +W SK EYDESGP IVHRKCF
Sbjct:  334 ERKYSVWIGGSILASLSTFQNLWCSKQEYDESGPGIVHRKCF 375          
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT1_SUIBO (Actin-1 OS=Suillus bovinus GN=ACT1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.256e-15
Identity = 37/42 (88.10%), Postives = 38/42 (90.48%), Query Frame = -2
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQ +W SK EYDESGP IVHRKCF
Sbjct:  334 ERKYSVWIGGSILASLSTFQNLWCSKQEYDESGPGIVHRKCF 375          
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT1_SCHCO (Actin-1 OS=Schizophyllum commune GN=ACT1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.256e-15
Identity = 37/42 (88.10%), Postives = 38/42 (90.48%), Query Frame = -2
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQ +W SK EYDESGP IVHRKCF
Sbjct:  334 ERKYSVWIGGSILASLSTFQNLWCSKQEYDESGPGIVHRKCF 375          
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT3_ECHGR (Actin-3 (Fragment) OS=Echinococcus granulosus GN=ACTIII PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.946e-15
Identity = 37/40 (92.50%), Postives = 38/40 (95.00%), Query Frame = -2
Query:  451 KYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 570
            KYSVWIGGSILASLSTF +MWISK EYDESGPSIVHRKCF
Sbjct:  270 KYSVWIGGSILASLSTFHEMWISKQEYDESGPSIVHRKCF 309          
The following BLAST results are available for this feature:
BLAST of DN617684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 326
Match NameE-valueIdentityDescription
ACT1_TETTH7.752e-1688.10Actin, macronuclear OS=Tetrahymena thermophila PE=... [more]
ACT1_DAUCA7.752e-1695.24Actin-1 OS=Daucus carota PE=2 SV=1[more]
ACT_CHOCR1.012e-1585.71Actin OS=Chondrus crispus GN=AC PE=2 SV=1[more]
ACT1_SOYBN1.012e-1588.10Actin-1 OS=Glycine max GN=SAC1 PE=3 SV=2[more]
ACT25_DICDI1.727e-1590.48Putative actin-25 OS=Dictyostelium discoideum GN=a... [more]
ACT_COPC72.256e-1588.10Actin OS=Coprinopsis cinerea (strain Okayama-7 / 1... [more]
ACT2_SUIBO2.256e-1588.10Actin-2 OS=Suillus bovinus GN=ACT2 PE=2 SV=1[more]
ACT1_SUIBO2.256e-1588.10Actin-1 OS=Suillus bovinus GN=ACT1 PE=2 SV=1[more]
ACT1_SCHCO2.256e-1588.10Actin-1 OS=Schizophyllum commune GN=ACT1 PE=2 SV=1[more]
ACT3_ECHGR2.946e-1592.50Actin-3 (Fragment) OS=Echinococcus granulosus GN=A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I20_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617684 ID=DN617684; Name=DN617684; organism=Citrus sinensis; type=EST; length=577bp
TATTGAATAACCAAATTTATTGACTGCAAGCTGACACTAATTAAAGTTTT
CTCATACAATAGCTATTAACATTAATGTTCCTTTTGAGAGGGGGAGAAAA
AAAACCTTCAAATATGAAAATTTAGAAAATGAAATAGAAAAGCATCACAA
CCACTCTTCATCTCCAGCTACAAACATCCTACTTTAAAAAAAAAAAAGGA
AAAAAAAGAAAAAAGACTTGGTTGAACACCAGATGAATGCAAGGCAAGGA
AGACGGTTGAGTACAGAAATAAGCCCCCCTCAAACGCTGTAAGAAGCTTG
TATAATAACATCAATATCGAGATATGCCTCCTTCAATGGCCCCAACCTTA
GCACTTCTCCATGTCAACCAACTTGAGTTCGCGAAACGAGACACAAAAAA
CCAACTAAATGGAAAAAAAGAACTCACCCATCAAGCACTTAAAGAACTTA
GAAGCATTTCCTGTGGACAATGGATGGACCAGACTCATCATACTCGCCCT
TTGAGATCCACATCTGCTGGAAGGTGCTGAGGGATGCAAGGATTGATCCT
CCAATCCAAACACTGTATTTTCTCTCT
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