DN617684

Overview
NameDN617684
Unique NameDN617684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT2_TRYBB (Actin B OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.946e-15
Identity = 36/42 (85.71%), Postives = 39/42 (92.86%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSIL+SL+TFQ MWI+K EYDESGPSIVH KCF
Sbjct:  335 ERKYSVWIGGSILSSLTTFQSMWITKSEYDESGPSIVHSKCF 376
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT23_DICDI (Putative actin-23 OS=Dictyostelium discoideum GN=act23 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.946e-15
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIG SILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  318 ERKYSVWIG-SILASLSTFQQMWISKEEYDESGPSIVHRKCF 358
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT1_TRYBB (Actin A OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.946e-15
Identity = 36/42 (85.71%), Postives = 39/42 (92.86%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSIL+SL+TFQ MWI+K EYDESGPSIVH KCF
Sbjct:  335 ERKYSVWIGGSILSSLTTFQSMWITKSEYDESGPSIVHSKCF 376
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACTX_TAKRU (Actin, alpha anomalous OS=Takifugu rubripes PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.847e-15
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWISK EY+E GPSI+H KCF
Sbjct:  335 ERKYSVWIGGSILASLSTFQQMWISKQEYEEIGPSIIHCKCF 376
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT18_DICDI (Actin-18 OS=Dictyostelium discoideum GN=act18 PE=3 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 3.847e-15
Identity = 36/41 (87.80%), Postives = 40/41 (97.56%), Query Frame = -2 
Query:  454 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 576
            ERKYSVW+GGSILASLS+FQ+MWISK EY+ESGPSIVHRKC
Sbjct:  335 ERKYSVWVGGSILASLSSFQEMWISKEEYNESGPSIVHRKC 375
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT_LEIMA (Actin OS=Leishmania major PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.025e-15
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSIL+SL+TFQ MW+ K EYDESGPSIVH KCF
Sbjct:  335 ERKYSVWIGGSILSSLTTFQTMWVKKSEYDESGPSIVHNKCF 376
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT2_SCHCO (Actin-2 OS=Schizophyllum commune GN=ACT2 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.025e-15
Identity = 37/41 (90.24%), Postives = 37/41 (90.24%), Query Frame = -2 
Query:  454 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 576
            ERKYSVWIGGSILASLSTFQ MW SK EYDESGP IVHRKC
Sbjct:  334 ERKYSVWIGGSILASLSTFQNMWCSKQEYDESGPGIVHRKC 374
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT_TRYCR (Actin OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.571e-15
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSIL+SL+TFQ MWI K EYDE+GPSIVH KCF
Sbjct:  335 ERKYSVWIGGSILSSLTTFQTMWIKKSEYDEAGPSIVHNKCF 376
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACTM_BRAFL (Actin, muscle OS=Branchiostoma floridae PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.462e-14
Identity = 35/42 (83.33%), Postives = 37/42 (88.10%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYS WIGGSILASLSTF  MWI K EYDE+GP+IVHRKCF
Sbjct:  337 ERKYSCWIGGSILASLSTFASMWIKKSEYDEAGPAIVHRKCF 378
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACTM_BRALA (Actin, muscle OS=Branchiostoma lanceolatum PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.909e-14
Identity = 35/42 (83.33%), Postives = 37/42 (88.10%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYS WIGGSILASLSTF  MWI K EYDE+GP+IVHRKCF
Sbjct:  339 ERKYSCWIGGSILASLSTFAAMWIKKSEYDEAGPAIVHRKCF 380
The following BLAST results are available for this feature:
BLAST of DN617684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 326
Match NameE-valueIdentityDescription
ACT2_TRYBB2.946e-1585.71Actin B OS=Trypanosoma brucei brucei PE=3 SV=1[more]
ACT23_DICDI2.946e-1595.24Putative actin-23 OS=Dictyostelium discoideum GN=a... [more]
ACT1_TRYBB2.946e-1585.71Actin A OS=Trypanosoma brucei brucei PE=3 SV=1[more]
ACTX_TAKRU3.847e-1588.10Actin, alpha anomalous OS=Takifugu rubripes PE=2 S... [more]
ACT18_DICDI3.847e-1587.80Actin-18 OS=Dictyostelium discoideum GN=act18 PE=3... [more]
ACT_LEIMA5.025e-1583.33Actin OS=Leishmania major PE=3 SV=1[more]
ACT2_SCHCO5.025e-1590.24Actin-2 OS=Schizophyllum commune GN=ACT2 PE=3 SV=1[more]
ACT_TRYCR8.571e-1583.33Actin OS=Trypanosoma cruzi PE=3 SV=1[more]
ACTM_BRAFL1.462e-1483.33Actin, muscle OS=Branchiostoma floridae PE=2 SV=1[more]
ACTM_BRALA1.909e-1483.33Actin, muscle OS=Branchiostoma lanceolatum PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I20_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617684 ID=DN617684; Name=DN617684; organism=Citrus sinensis; type=EST; length=577bp
TATTGAATAACCAAATTTATTGACTGCAAGCTGACACTAATTAAAGTTTT
CTCATACAATAGCTATTAACATTAATGTTCCTTTTGAGAGGGGGAGAAAA
AAAACCTTCAAATATGAAAATTTAGAAAATGAAATAGAAAAGCATCACAA
CCACTCTTCATCTCCAGCTACAAACATCCTACTTTAAAAAAAAAAAAGGA
AAAAAAAGAAAAAAGACTTGGTTGAACACCAGATGAATGCAAGGCAAGGA
AGACGGTTGAGTACAGAAATAAGCCCCCCTCAAACGCTGTAAGAAGCTTG
TATAATAACATCAATATCGAGATATGCCTCCTTCAATGGCCCCAACCTTA
GCACTTCTCCATGTCAACCAACTTGAGTTCGCGAAACGAGACACAAAAAA
CCAACTAAATGGAAAAAAAGAACTCACCCATCAAGCACTTAAAGAACTTA
GAAGCATTTCCTGTGGACAATGGATGGACCAGACTCATCATACTCGCCCT
TTGAGATCCACATCTGCTGGAAGGTGCTGAGGGATGCAAGGATTGATCCT
CCAATCCAAACACTGTATTTTCTCTCT
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