DN617684

Overview
NameDN617684
Unique NameDN617684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACTM_BRABE (Actin, muscle OS=Branchiostoma belcheri PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.909e-14
Identity = 35/42 (83.33%), Postives = 37/42 (88.10%), Query Frame = -2
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYS WIGGSILASLSTF  MWI K EYDE+GP+IVHRKCF
Sbjct:  338 ERKYSCWIGGSILASLSTFAAMWIKKSEYDEAGPAIVHRKCF 379          
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT24_DICDI (Putative actin-24 OS=Dictyostelium discoideum GN=act24 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.909e-14
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = -2
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYS WIGGSILASLS+FQ  WISK EYDESGPSIVHRKC+
Sbjct:  336 ERKYSAWIGGSILASLSSFQPRWISKEEYDESGPSIVHRKCW 377          
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT1_NAEFO (Actin-1 OS=Naegleria fowleri PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.257e-14
Identity = 35/42 (83.33%), Postives = 39/42 (92.86%), Query Frame = -2
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWI+K EY+++GP IVHRK F
Sbjct:  334 ERKYSVWIGGSILASLSTFQQMWITKEEYEDAGPGIVHRKSF 375          
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT2_NAEFO (Actin-2 (Fragment) OS=Naegleria fowleri PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.476e-14
Identity = 34/42 (80.95%), Postives = 39/42 (92.86%), Query Frame = -2
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWI+K EY+++GP IVHR+ F
Sbjct:  330 ERKYSVWIGGSILASLSTFQQMWITKEEYEDAGPGIVHRESF 371          
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACTM_STRPU (Actin, muscle OS=Strongylocentrotus purpuratus PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.238e-13
Identity = 38/42 (90.48%), Postives = 38/42 (90.48%), Query Frame = -2
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWISK EY  SG SIVHRKCF
Sbjct:  335 ERKYSVWIGGSILASLSTFQQMWISKQEY--SGASIVHRKCF 374          
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT5_ARATH (Putative actin-5 OS=Arabidopsis thaliana GN=ACT5 PE=5 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.111e-13
Identity = 33/42 (78.57%), Postives = 37/42 (88.10%), Query Frame = -2
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVW+GGSILASLS+F  MWI+K EYDE G +IVHRKCF
Sbjct:  337 ERKYSVWVGGSILASLSSFAPMWITKAEYDEQGGAIVHRKCF 378          
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACTD_PHYPO (Actin, spherule isoform OS=Physarum polycephalum GN=ARDD PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 8.022e-13
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = -2
Query:  451 RKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 573
            R+YS WIGGSILASLSTF+QM ISK EY+E GPSIVHRKCF
Sbjct:  327 RQYSAWIGGSILASLSTFEQMCISKKEYNECGPSIVHRKCF 367          
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT1_NAEGR (Actin-1 OS=Naegleria gruberi GN=ACT1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.368e-12
Identity = 32/42 (76.19%), Postives = 37/42 (88.10%), Query Frame = -2
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSIL+SLSTFQ MWI+  EY+++G  IVHRKCF
Sbjct:  333 ERKYSVWIGGSILSSLSTFQSMWITAEEYEDAGCGIVHRKCF 374          
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT4_LYTPI (Actin, cytoskeletal 4 (Fragment) OS=Lytechinus pictus PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.981e-12
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = -2
Query:  475 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGP 576
            ERKYSVWIGGSILASLSTFQQMWISK EYDESGP
Sbjct:  121 ERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 154          
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ARPM1_MOUSE (Actin-related protein M1 homolog OS=Mus musculus GN=Arpm1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.581e-11
Identity = 29/42 (69.05%), Postives = 36/42 (85.71%), Query Frame = -2
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERK SVW+GGSILASLS FQ MWI+  E++E GP+IVH++CF
Sbjct:  328 ERKISVWMGGSILASLSAFQDMWITAAEFEEVGPNIVHQRCF 369          
The following BLAST results are available for this feature:
BLAST of DN617684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 326
Match NameE-valueIdentityDescription
ACTM_BRABE1.909e-1483.33Actin, muscle OS=Branchiostoma belcheri PE=2 SV=1[more]
ACT24_DICDI1.909e-1485.71Putative actin-24 OS=Dictyostelium discoideum GN=a... [more]
ACT1_NAEFO3.257e-1483.33Actin-1 OS=Naegleria fowleri PE=2 SV=2[more]
ACT2_NAEFO9.476e-1480.95Actin-2 (Fragment) OS=Naegleria fowleri PE=2 SV=1[more]
ACTM_STRPU1.238e-1390.48Actin, muscle OS=Strongylocentrotus purpuratus PE=... [more]
ACT5_ARATH2.111e-1378.57Putative actin-5 OS=Arabidopsis thaliana GN=ACT5 P... [more]
ACTD_PHYPO8.022e-1382.93Actin, spherule isoform OS=Physarum polycephalum G... [more]
ACT1_NAEGR1.368e-1276.19Actin-1 OS=Naegleria gruberi GN=ACT1 PE=3 SV=1[more]
ACT4_LYTPI3.981e-1297.06Actin, cytoskeletal 4 (Fragment) OS=Lytechinus pic... [more]
ARPM1_MOUSE2.581e-1169.05Actin-related protein M1 homolog OS=Mus musculus G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I20_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617684 ID=DN617684; Name=DN617684; organism=Citrus sinensis; type=EST; length=577bp
TATTGAATAACCAAATTTATTGACTGCAAGCTGACACTAATTAAAGTTTT
CTCATACAATAGCTATTAACATTAATGTTCCTTTTGAGAGGGGGAGAAAA
AAAACCTTCAAATATGAAAATTTAGAAAATGAAATAGAAAAGCATCACAA
CCACTCTTCATCTCCAGCTACAAACATCCTACTTTAAAAAAAAAAAAGGA
AAAAAAAGAAAAAAGACTTGGTTGAACACCAGATGAATGCAAGGCAAGGA
AGACGGTTGAGTACAGAAATAAGCCCCCCTCAAACGCTGTAAGAAGCTTG
TATAATAACATCAATATCGAGATATGCCTCCTTCAATGGCCCCAACCTTA
GCACTTCTCCATGTCAACCAACTTGAGTTCGCGAAACGAGACACAAAAAA
CCAACTAAATGGAAAAAAAGAACTCACCCATCAAGCACTTAAAGAACTTA
GAAGCATTTCCTGTGGACAATGGATGGACCAGACTCATCATACTCGCCCT
TTGAGATCCACATCTGCTGGAAGGTGCTGAGGGATGCAAGGATTGATCCT
CCAATCCAAACACTGTATTTTCTCTCT
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