DN617684

Overview
NameDN617684
Unique NameDN617684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ARP4_ASPFU (Actin-related protein 4 OS=Aspergillus fumigatus GN=arp4 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.581e-11
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = -2
Query:  454 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 576
            ERK+  W+GGSILASL TF QMWISK EYDE GP+IV ++C
Sbjct:  425 ERKFGSWVGGSILASLGTFHQMWISKKEYDEHGPNIVEKRC 465          
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT9_ARATH (Putative actin-9 OS=Arabidopsis thaliana GN=ACT9 PE=5 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.581e-11
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = -2
Query:  454 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 576
            E + SVWIGGSILASLSTF QMWI+K EY+E G +IVHRKC
Sbjct:  325 ESECSVWIGGSILASLSTFHQMWITKDEYEEHGAAIVHRKC 365          
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACL6B_RAT (Actin-like protein 6B OS=Rattus norvegicus GN=Actl6b PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.370e-11
Identity = 31/41 (75.61%), Postives = 33/41 (80.49%), Query Frame = -2
Query:  454 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 576
            ERK+S WIGGSILASL TFQQMWISK EY+E G   V RKC
Sbjct:  385 ERKFSPWIGGSILASLGTFQQMWISKQEYEEGGKQCVERKC 425          
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACL6B_MOUSE (Actin-like protein 6B OS=Mus musculus GN=Actl6b PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.370e-11
Identity = 31/41 (75.61%), Postives = 33/41 (80.49%), Query Frame = -2
Query:  454 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 576
            ERK+S WIGGSILASL TFQQMWISK EY+E G   V RKC
Sbjct:  385 ERKFSPWIGGSILASLGTFQQMWISKQEYEEGGKQCVERKC 425          
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACL6B_HUMAN (Actin-like protein 6B OS=Homo sapiens GN=ACTL6B PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.370e-11
Identity = 31/41 (75.61%), Postives = 33/41 (80.49%), Query Frame = -2
Query:  454 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 576
            ERK+S WIGGSILASL TFQQMWISK EY+E G   V RKC
Sbjct:  385 ERKFSPWIGGSILASLGTFQQMWISKQEYEEGGKQCVERKC 425          
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACL6B_BOVIN (Actin-like protein 6B OS=Bos taurus GN=ACTL6B PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.370e-11
Identity = 31/41 (75.61%), Postives = 33/41 (80.49%), Query Frame = -2
Query:  454 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 576
            ERK+S WIGGSILASL TFQQMWISK EY+E G   V RKC
Sbjct:  385 ERKFSPWIGGSILASLGTFQQMWISKQEYEEGGKQCVERKC 425          
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ARP4_EMENI (Actin-related protein 4 OS=Emericella nidulans GN=arp4 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.402e-11
Identity = 29/41 (70.73%), Postives = 35/41 (85.37%), Query Frame = -2
Query:  454 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 576
            ER++S WIGGSILASL TF QMWISK E+DE GP+IV ++C
Sbjct:  431 ERRFSSWIGGSILASLGTFHQMWISKKEFDEHGPNIVEKRC 471          
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ARP4_ARATH (Actin-related protein 4 OS=Arabidopsis thaliana GN=ARP4 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.402e-11
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = -2
Query:  454 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 576
            ER++SVWIGGSILASL +FQQMW SK EY+E G S + RKC
Sbjct:  400 ERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRKC 440          
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ARPM1_HUMAN (Actin-related protein M1 OS=Homo sapiens GN=ARPM1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.749e-11
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = -2
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERK SVW+GGSILASLS FQ MWI+  E+ E GP+IVH++CF
Sbjct:  331 ERKISVWMGGSILASLSAFQDMWITAAEFKEVGPNIVHQRCF 372          
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ARP4_ORYSJ (Actin-related protein 4 OS=Oryza sativa subsp. japonica GN=ARP4 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.749e-11
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = -2
Query:  454 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 576
            ER++SVWIGGSILASL +FQQMW SK EY+E G S + RKC
Sbjct:  402 ERRFSVWIGGSILASLGSFQQMWFSKAEYEEHGVSYIQRKC 442          
The following BLAST results are available for this feature:
BLAST of DN617684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 326
Match NameE-valueIdentityDescription
ARP4_ASPFU2.581e-1170.73Actin-related protein 4 OS=Aspergillus fumigatus G... [more]
ACT9_ARATH2.581e-1175.61Putative actin-9 OS=Arabidopsis thaliana GN=ACT9 P... [more]
ACL6B_RAT3.370e-1175.61Actin-like protein 6B OS=Rattus norvegicus GN=Actl... [more]
ACL6B_MOUSE3.370e-1175.61Actin-like protein 6B OS=Mus musculus GN=Actl6b PE... [more]
ACL6B_HUMAN3.370e-1175.61Actin-like protein 6B OS=Homo sapiens GN=ACTL6B PE... [more]
ACL6B_BOVIN3.370e-1175.61Actin-like protein 6B OS=Bos taurus GN=ACTL6B PE=2... [more]
ARP4_EMENI4.402e-1170.73Actin-related protein 4 OS=Emericella nidulans GN=... [more]
ARP4_ARATH4.402e-1170.73Actin-related protein 4 OS=Arabidopsis thaliana GN... [more]
ARPM1_HUMAN5.749e-1169.05Actin-related protein M1 OS=Homo sapiens GN=ARPM1 ... [more]
ARP4_ORYSJ5.749e-1170.73Actin-related protein 4 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I20_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617684 ID=DN617684; Name=DN617684; organism=Citrus sinensis; type=EST; length=577bp
TATTGAATAACCAAATTTATTGACTGCAAGCTGACACTAATTAAAGTTTT
CTCATACAATAGCTATTAACATTAATGTTCCTTTTGAGAGGGGGAGAAAA
AAAACCTTCAAATATGAAAATTTAGAAAATGAAATAGAAAAGCATCACAA
CCACTCTTCATCTCCAGCTACAAACATCCTACTTTAAAAAAAAAAAAGGA
AAAAAAAGAAAAAAGACTTGGTTGAACACCAGATGAATGCAAGGCAAGGA
AGACGGTTGAGTACAGAAATAAGCCCCCCTCAAACGCTGTAAGAAGCTTG
TATAATAACATCAATATCGAGATATGCCTCCTTCAATGGCCCCAACCTTA
GCACTTCTCCATGTCAACCAACTTGAGTTCGCGAAACGAGACACAAAAAA
CCAACTAAATGGAAAAAAAGAACTCACCCATCAAGCACTTAAAGAACTTA
GAAGCATTTCCTGTGGACAATGGATGGACCAGACTCATCATACTCGCCCT
TTGAGATCCACATCTGCTGGAAGGTGCTGAGGGATGCAAGGATTGATCCT
CCAATCCAAACACTGTATTTTCTCTCT
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