DN617684

Overview
NameDN617684
Unique NameDN617684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7281 contig Csv1_Contig7281:1127..1703. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ARP4_ORYSI (Actin-related protein 4 OS=Oryza sativa subsp. indica GN=ARP4 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 5.749e-11
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = -2
Query:  454 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 576
            ER++SVWIGGSILASL +FQQMW SK EY+E G S + RKC
Sbjct:  402 ERRFSVWIGGSILASLGSFQQMWFSKAEYEEHGVSYIQRKC 442          
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACTY_DICDI (Centractin OS=Dictyostelium discoideum GN=arpA PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.508e-11
Identity = 27/42 (64.29%), Postives = 36/42 (85.71%), Query Frame = -2
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYS W+GGSILASLSTF+ +W+++ EY+E G S++HRK F
Sbjct:  342 ERKYSAWMGGSILASLSTFKDLWVTRQEYEEDGCSVIHRKIF 383          
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACL6A_MOUSE (Actin-like protein 6A OS=Mus musculus GN=Actl6a PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 7.508e-11
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = -2
Query:  454 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 576
            ER++S WIGGSILASL TFQQMWISK EY+E G   V RKC
Sbjct:  388 ERRFSSWIGGSILASLGTFQQMWISKQEYEEGGKQCVERKC 428          
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACL6A_MACFA (Actin-like protein 6A OS=Macaca fascicularis GN=ACTL6A PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.508e-11
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = -2
Query:  454 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 576
            ER++S WIGGSILASL TFQQMWISK EY+E G   V RKC
Sbjct:  388 ERRFSSWIGGSILASLGTFQQMWISKQEYEEGGKQCVERKC 428          
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACL6A_HUMAN (Actin-like protein 6A OS=Homo sapiens GN=ACTL6A PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.508e-11
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = -2
Query:  454 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 576
            ER++S WIGGSILASL TFQQMWISK EY+E G   V RKC
Sbjct:  388 ERRFSSWIGGSILASLGTFQQMWISKQEYEEGGKQCVERKC 428          
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT_DICVI (Actin (Fragment) OS=Dictyocaulus viviparus PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.806e-11
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = -2
Query:  451 SILASLSTFQQMWISKGEYDESGPSIVHRKCF 546
            SILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:    2 SILASLSTFQQMWISKQEYDESGPSIVHRKCF 33          
The following BLAST results are available for this feature:
BLAST of DN617684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 326
Match NameE-valueIdentityDescription
ARP4_ORYSI5.749e-1170.73Actin-related protein 4 OS=Oryza sativa subsp. ind... [more]
ACTY_DICDI7.508e-1164.29Centractin OS=Dictyostelium discoideum GN=arpA PE=... [more]
ACL6A_MOUSE7.508e-1173.17Actin-like protein 6A OS=Mus musculus GN=Actl6a PE... [more]
ACL6A_MACFA7.508e-1173.17Actin-like protein 6A OS=Macaca fascicularis GN=AC... [more]
ACL6A_HUMAN7.508e-1173.17Actin-like protein 6A OS=Homo sapiens GN=ACTL6A PE... [more]
ACT_DICVI9.806e-1196.88Actin (Fragment) OS=Dictyocaulus viviparus PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I20_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617684 ID=DN617684; Name=DN617684; organism=Citrus sinensis; type=EST; length=577bp
TATTGAATAACCAAATTTATTGACTGCAAGCTGACACTAATTAAAGTTTT
CTCATACAATAGCTATTAACATTAATGTTCCTTTTGAGAGGGGGAGAAAA
AAAACCTTCAAATATGAAAATTTAGAAAATGAAATAGAAAAGCATCACAA
CCACTCTTCATCTCCAGCTACAAACATCCTACTTTAAAAAAAAAAAAGGA
AAAAAAAGAAAAAAGACTTGGTTGAACACCAGATGAATGCAAGGCAAGGA
AGACGGTTGAGTACAGAAATAAGCCCCCCTCAAACGCTGTAAGAAGCTTG
TATAATAACATCAATATCGAGATATGCCTCCTTCAATGGCCCCAACCTTA
GCACTTCTCCATGTCAACCAACTTGAGTTCGCGAAACGAGACACAAAAAA
CCAACTAAATGGAAAAAAAGAACTCACCCATCAAGCACTTAAAGAACTTA
GAAGCATTTCCTGTGGACAATGGATGGACCAGACTCATCATACTCGCCCT
TTGAGATCCACATCTGCTGGAAGGTGCTGAGGGATGCAAGGATTGATCCT
CCAATCCAAACACTGTATTTTCTCTCT
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