DN617684

Overview
NameDN617684
Unique NameDN617684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACTB_OREMO (Actin, cytoplasmic 1 OS=Oreochromis mossambicus GN=actb PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.410e-17
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  334 ERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACTB_MOUSE (Actin, cytoplasmic 1 OS=Mus musculus GN=Actb PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.410e-17
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  334 ERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACTB_MESAU (Actin, cytoplasmic 1 OS=Mesocricetus auratus GN=ACTB PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.410e-17
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  334 ERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACTB_MACFA (Actin, cytoplasmic 1 OS=Macaca fascicularis GN=ACTB PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.410e-17
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  334 ERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACTB_HUMAN (Actin, cytoplasmic 1 OS=Homo sapiens GN=ACTB PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.410e-17
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  334 ERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACTB_HORSE (Actin, cytoplasmic 1 OS=Equus caballus GN=ACTB PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.410e-17
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  334 ERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACTB_CYPCA (Actin, cytoplasmic 1 OS=Cyprinus carpio GN=actb PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.410e-17
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  334 ERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACTB_CTEID (Actin, cytoplasmic 1 OS=Ctenopharyngodon idella GN=actb PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.410e-17
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  334 ERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACTB_CHICK (Actin, cytoplasmic 1 OS=Gallus gallus GN=ACTB PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.410e-17
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  334 ERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACTB_CERPY (Actin, cytoplasmic 1 OS=Cercopithecus pygerythrus GN=ACTB PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.410e-17
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = -2 
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  320 ERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 361
The following BLAST results are available for this feature:
BLAST of DN617684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 326
Match NameE-valueIdentityDescription
ACTB_OREMO2.410e-1797.62Actin, cytoplasmic 1 OS=Oreochromis mossambicus GN... [more]
ACTB_MOUSE2.410e-1797.62Actin, cytoplasmic 1 OS=Mus musculus GN=Actb PE=1 ... [more]
ACTB_MESAU2.410e-1797.62Actin, cytoplasmic 1 OS=Mesocricetus auratus GN=AC... [more]
ACTB_MACFA2.410e-1797.62Actin, cytoplasmic 1 OS=Macaca fascicularis GN=ACT... [more]
ACTB_HUMAN2.410e-1797.62Actin, cytoplasmic 1 OS=Homo sapiens GN=ACTB PE=1 ... [more]
ACTB_HORSE2.410e-1797.62Actin, cytoplasmic 1 OS=Equus caballus GN=ACTB PE=... [more]
ACTB_CYPCA2.410e-1797.62Actin, cytoplasmic 1 OS=Cyprinus carpio GN=actb PE... [more]
ACTB_CTEID2.410e-1797.62Actin, cytoplasmic 1 OS=Ctenopharyngodon idella GN... [more]
ACTB_CHICK2.410e-1797.62Actin, cytoplasmic 1 OS=Gallus gallus GN=ACTB PE=1... [more]
ACTB_CERPY2.410e-1797.62Actin, cytoplasmic 1 OS=Cercopithecus pygerythrus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I20_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617684 ID=DN617684; Name=DN617684; organism=Citrus sinensis; type=EST; length=577bp
TATTGAATAACCAAATTTATTGACTGCAAGCTGACACTAATTAAAGTTTT
CTCATACAATAGCTATTAACATTAATGTTCCTTTTGAGAGGGGGAGAAAA
AAAACCTTCAAATATGAAAATTTAGAAAATGAAATAGAAAAGCATCACAA
CCACTCTTCATCTCCAGCTACAAACATCCTACTTTAAAAAAAAAAAAGGA
AAAAAAAGAAAAAAGACTTGGTTGAACACCAGATGAATGCAAGGCAAGGA
AGACGGTTGAGTACAGAAATAAGCCCCCCTCAAACGCTGTAAGAAGCTTG
TATAATAACATCAATATCGAGATATGCCTCCTTCAATGGCCCCAACCTTA
GCACTTCTCCATGTCAACCAACTTGAGTTCGCGAAACGAGACACAAAAAA
CCAACTAAATGGAAAAAAAGAACTCACCCATCAAGCACTTAAAGAACTTA
GAAGCATTTCCTGTGGACAATGGATGGACCAGACTCATCATACTCGCCCT
TTGAGATCCACATCTGCTGGAAGGTGCTGAGGGATGCAAGGATTGATCCT
CCAATCCAAACACTGTATTTTCTCTCT
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