DN617679

Overview
NameDN617679
Unique NameDN617679
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length490
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617679 vs. ExPASy Swiss-Prot
Match: E4PD_AERHH (D-erythrose-4-phosphate dehydrogenase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=epd PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.203e-13
Identity = 46/141 (32.62%), Postives = 82/141 (58.16%), Query Frame = 2
Query:   62 VKIGINGFGRIGRLVARVILQ--RD-DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK---DAPMFVVGVN 466
            +KI ING+GRIGR V R + +  RD ++++VA+N+     + M ++ ++D+ HG++ HH +++  + ++L GE  +++F  R+P  +PW   G + V++ TGVF                V+ S P++   DA + V GVN
Sbjct:    2 IKIAINGYGRIGRNVLRALYESGRDKNIKIVAINE-LAAPEAMVHLTRFDTSHGRF-HHPVQLAGN-SMLVGEDLISLFAERDPSRLPWRALGVDVVLDCTGVFGSRADAELHLAAGAGKVLFSHPAEADVDATI-VYGVN 138          
BLAST of DN617679 vs. ExPASy Swiss-Prot
Match: G3P1_STAAW (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain MW2) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.229e-12
Identity = 48/139 (34.53%), Postives = 72/139 (51.80%), Query Frame = 2
Query:   62 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFVVGVNENE 475
            VK+ INGFGRIGRL  R I + + +E+VAVND     D + ++ KYD++ G++   E++V D    + G K V  F   +  ++PW +   + V+E TG +T               V+ISAP+  D    V   N  E
Sbjct:    3 VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFT-GEVEVVDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQE 138          
BLAST of DN617679 vs. ExPASy Swiss-Prot
Match: G3P1_STAAU (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus GN=gapA1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.229e-12
Identity = 48/139 (34.53%), Postives = 72/139 (51.80%), Query Frame = 2
Query:   62 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFVVGVNENE 475
            VK+ INGFGRIGRL  R I + + +E+VAVND     D + ++ KYD++ G++   E++V D    + G K V  F   +  ++PW +   + V+E TG +T               V+ISAP+  D    V   N  E
Sbjct:    3 VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFT-GEVEVVDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQE 138          
BLAST of DN617679 vs. ExPASy Swiss-Prot
Match: G3P1_STAAS (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain MSSA476) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.229e-12
Identity = 48/139 (34.53%), Postives = 72/139 (51.80%), Query Frame = 2
Query:   62 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFVVGVNENE 475
            VK+ INGFGRIGRL  R I + + +E+VAVND     D + ++ KYD++ G++   E++V D    + G K V  F   +  ++PW +   + V+E TG +T               V+ISAP+  D    V   N  E
Sbjct:    3 VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFT-GEVEVVDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQE 138          
BLAST of DN617679 vs. ExPASy Swiss-Prot
Match: G3P1_STAAR (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain MRSA252) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.229e-12
Identity = 48/139 (34.53%), Postives = 72/139 (51.80%), Query Frame = 2
Query:   62 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFVVGVNENE 475
            VK+ INGFGRIGRL  R I + + +E+VAVND     D + ++ KYD++ G++   E++V D    + G K V  F   +  ++PW +   + V+E TG +T               V+ISAP+  D    V   N  E
Sbjct:    3 VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFT-GEVEVVDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQE 138          
BLAST of DN617679 vs. ExPASy Swiss-Prot
Match: G3P1_STAAN (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain N315) GN=gapA1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.229e-12
Identity = 48/139 (34.53%), Postives = 72/139 (51.80%), Query Frame = 2
Query:   62 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFVVGVNENE 475
            VK+ INGFGRIGRL  R I + + +E+VAVND     D + ++ KYD++ G++   E++V D    + G K V  F   +  ++PW +   + V+E TG +T               V+ISAP+  D    V   N  E
Sbjct:    3 VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFT-GEVEVVDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQE 138          
BLAST of DN617679 vs. ExPASy Swiss-Prot
Match: G3P1_STAAM (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=gapA1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.229e-12
Identity = 48/139 (34.53%), Postives = 72/139 (51.80%), Query Frame = 2
Query:   62 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFVVGVNENE 475
            VK+ INGFGRIGRL  R I + + +E+VAVND     D + ++ KYD++ G++   E++V D    + G K V  F   +  ++PW +   + V+E TG +T               V+ISAP+  D    V   N  E
Sbjct:    3 VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFT-GEVEVVDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQE 138          
BLAST of DN617679 vs. ExPASy Swiss-Prot
Match: G3P1_STAAC (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain COL) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.229e-12
Identity = 48/139 (34.53%), Postives = 72/139 (51.80%), Query Frame = 2
Query:   62 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFVVGVNENE 475
            VK+ INGFGRIGRL  R I + + +E+VAVND     D + ++ KYD++ G++   E++V D    + G K V  F   +  ++PW +   + V+E TG +T               V+ISAP+  D    V   N  E
Sbjct:    3 VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFT-GEVEVVDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQE 138          
BLAST of DN617679 vs. ExPASy Swiss-Prot
Match: E4PD_SALEP (D-erythrose-4-phosphate dehydrogenase OS=Salmonella enteritidis PT4 (strain P125109) GN=epd PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.605e-12
Identity = 49/148 (33.11%), Postives = 78/148 (52.70%), Query Frame = 2
Query:   62 VKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLF-GEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAP-SKDAPMFVV-GVNENEYKPE 487
            V+I INGFGRIGR V R + +   R ++ +VA+N+       M ++ KYD+ HG++     +V+ ++  LF G+  + +   R   ++PW E G + V++ TGV+                V+ S P S D    VV GVN+NE + E
Sbjct:    3 VRIAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRF---AWEVRHEREQLFVGDDVIRILHERTLADLPWRELGVDVVLDCTGVYGNREHGEAHIAAGAKKVLFSHPGSNDLDATVVFGVNQNELRAE 146          
BLAST of DN617679 vs. ExPASy Swiss-Prot
Match: E4PD_SALDC (D-erythrose-4-phosphate dehydrogenase OS=Salmonella dublin (strain CT_02021853) GN=epd PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.605e-12
Identity = 49/148 (33.11%), Postives = 78/148 (52.70%), Query Frame = 2
Query:   62 VKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLF-GEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAP-SKDAPMFVV-GVNENEYKPE 487
            V+I INGFGRIGR V R + +   R ++ +VA+N+       M ++ KYD+ HG++     +V+ ++  LF G+  + +   R   ++PW E G + V++ TGV+                V+ S P S D    VV GVN+NE + E
Sbjct:    3 VRIAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRF---AWEVRHEREQLFVGDDVIRILHERTLADLPWRELGVDVVLDCTGVYGNREHGEAHIAAGAKKVLFSHPGSNDLDATVVFGVNQNELRAE 146          
The following BLAST results are available for this feature:
BLAST of DN617679 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 312
Match NameE-valueIdentityDescription
E4PD_AERHH7.203e-1332.62D-erythrose-4-phosphate dehydrogenase OS=Aeromonas... [more]
G3P1_STAAW1.229e-1234.53Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAAU1.229e-1234.53Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAAS1.229e-1234.53Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAAR1.229e-1234.53Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAAN1.229e-1234.53Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAAM1.229e-1234.53Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAAC1.229e-1234.53Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
E4PD_SALEP1.605e-1233.11D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALDC1.605e-1233.11D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I17_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617679 ID=DN617679; Name=DN617679; organism=Citrus sinensis; type=EST; length=490bp
CTACAACTTTCTTCACCACTCTTTCACCGCTCAATTTCATCTCTCGAGAA
TCATGGGGAAGGTCAAGATCGGAATCAACGGATTCGGAAGAATTGGTAGG
CTGGTGGCAAGAGTCATCTTGCAGAGGGACGATGTTGAACTCGTTGCTGT
TAATGATCCCTTTATCACAACCGATTACATGACATACATGTTTAAGTACG
ACAGTGTTCACGGTCAATGGAAGCACCATGAATTGAAGGTTAAGGACGAT
AAGACCCTTCTCTTTGGTGAGAAGCCTGTCACTGTTTTCGGTGTTAGGAA
CCCAGAGGAGATCCCATGGGCTGAGACTGGAGCCGAGTATGTTGTGGAGT
CGACTGGAGTCTTTACTGACAAGGATAAGGCTGCTGCCCATTTGAAGGGT
GGTGCTAAGAAAGTTATCATCTCAGCCCCCAGCAAGGATGCTCCTATGTT
TGTTGTCGGTGTCAATGAAAACGAGTACAAACCAGAGCTC
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