DN617678

Overview
NameDN617678
Unique NameDN617678
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: E4PD_SHEFN (D-erythrose-4-phosphate dehydrogenase OS=Shewanella frigidimarina (strain NCIMB 400) GN=epd PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.556e-14
Identity = 37/89 (41.57%), Postives = 55/89 (61.80%), Query Frame = -2
Query:  309 VDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 575
            +DL+V LEK  + ++I + ++  S G   GILGYT++ +VS DF  D RSSI D       +   VKL+ W DNEWG++ R++D  + M
Sbjct:  244 IDLSVTLEKKVNIEQINSVLQRASNGSFNGILGYTDEPLVSCDFNHDPRSSIVDGTQTRVSAGHLVKLLLWCDNEWGFANRMLDTSLAM 332          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3P3_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap3 PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 7.256e-14
Identity = 38/87 (43.68%), Postives = 56/87 (64.37%), Query Frame = -2
Query:  321 VVDLTVRLEKDASYDEIKAAIKAESE-GKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDL 578
            + D    + +  + +EI A +KA SE   L+GILGY E  +VS D+  D RSSI DA + + + +  VK+++WYDNEWGY  R+V+L
Sbjct:  242 LTDCVFEVNRPTTVEEINALLKAASEQAPLQGILGYEERPLVSIDYKDDPRSSIIDALSTMVVDETQVKILAWYDNEWGYVNRMVEL 328          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3P3_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anabaena sp. (strain PCC 7120) GN=gap3 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.476e-14
Identity = 38/87 (43.68%), Postives = 56/87 (64.37%), Query Frame = -2
Query:  321 VVDLTVRLEKDASYDEIKAAIKAESE-GKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDL 578
            + D    + +  + +EI A +KA SE   L+GILGY E  +VS D+  D RSSI DA + + + +  VK+++WYDNEWGY  R+V+L
Sbjct:  242 LTDCVFEVTRPTTVEEINALLKAASEQAPLQGILGYEERPLVSIDYKDDPRSSIIDALSTMVVDETQVKILAWYDNEWGYVNRMVEL 328          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: E4PD_SHEPW (D-erythrose-4-phosphate dehydrogenase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=epd PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.238e-13
Identity = 35/93 (37.63%), Postives = 54/93 (58.06%), Query Frame = -2
Query:  297 VDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 575
            +DL+V L+K    +++   +K  +EG   G++GYT + +VS DF  D RSSI D           VKL+ W DNEWG++ R++D  + M K +
Sbjct:  244 IDLSVTLDKRVDIEQVNRVLKQATEGSFSGVVGYTNEPLVSCDFNHDPRSSIVDGTQTRVSDGHLVKLLLWCDNEWGFANRMLDTSLEMIKAR 336          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3PB_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPB PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.111e-13
Identity = 37/87 (42.53%), Postives = 55/87 (63.22%), Query Frame = -2
Query:  321 VVDLTVRL-EKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDL 578
            VVDL V + +K  + +++ AA +  ++G LKG+L   ++ +VS DF     SS  D+   + +    VK+V+WYDNEWGYS RVVDL
Sbjct:  297 VVDLVVNVAKKGITAEDVNAAFRKAADGPLKGVLAVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDL 383          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3PB_PEA (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 3.601e-13
Identity = 39/87 (44.83%), Postives = 54/87 (62.07%), Query Frame = -2
Query:  321 VVDLTVRL-EKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDL 578
            VVDL V + +K  S +++ AA +  +EG LKGIL   +  +VS DF     S+  D+   + +    VK+V+WYDNEWGYS RVVDL
Sbjct:  328 VVDLVVNVAKKGISAEDVNAAFRKAAEGPLKGILDVCDVPLVSVDFRCSDVSTTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDL 414          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3P2_STAAW (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain MW2) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.703e-13
Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = -2
Query:  321 VVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDL 578
            +VDL V LEK+ + +E+  A   E+ G L+GI+      +VS DF  +  S+I DAK+ + +S   VK+++WYDNEWGYS RVVD+
Sbjct:  242 LVDLVVDLEKEVTAEEVNQAF--ENAG-LEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVMSGNKVKVIAWYDNEWGYSNRVVDV 324          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3P2_STAAS (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain MSSA476) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.703e-13
Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = -2
Query:  321 VVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDL 578
            +VDL V LEK+ + +E+  A   E+ G L+GI+      +VS DF  +  S+I DAK+ + +S   VK+++WYDNEWGYS RVVD+
Sbjct:  242 LVDLVVDLEKEVTAEEVNQAF--ENAG-LEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVMSGNKVKVIAWYDNEWGYSNRVVDV 324          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3P2_STAAR (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain MRSA252) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.703e-13
Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = -2
Query:  321 VVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDL 578
            +VDL V LEK+ + +E+  A   E+ G L+GI+      +VS DF  +  S+I DAK+ + +S   VK+++WYDNEWGYS RVVD+
Sbjct:  242 LVDLVVDLEKEVTAEEVNQAF--ENAG-LEGIIEVEHQPLVSVDFNTNPHSAIIDAKSTMVMSGNKVKVIAWYDNEWGYSNRVVDV 324          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3P2_STAAN (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain N315) GN=gapA2 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.703e-13
Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = -2
Query:  321 VVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDL 578
            +VDL V LEK+ + +E+  A   E+ G L+GI+      +VS DF  +  S+I DAK+ + +S   VK+++WYDNEWGYS RVVD+
Sbjct:  242 LVDLVVDLEKEVTAEEVNQAF--ENAG-LEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVMSGNKVKVIAWYDNEWGYSNRVVDV 324          
The following BLAST results are available for this feature:
BLAST of DN617678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 260
Match NameE-valueIdentityDescription
E4PD_SHEFN5.556e-1441.57D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
G3P3_ANAVT7.256e-1443.68Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anab... [more]
G3P3_ANASP9.476e-1443.68Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anab... [more]
E4PD_SHEPW1.238e-1337.63D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
G3PB_TOBAC2.111e-1342.53Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_PEA3.601e-1344.83Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3P2_STAAW4.703e-1345.35Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAAS4.703e-1345.35Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAAR4.703e-1345.35Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAAN4.703e-1345.35Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01I17_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617678 ID=DN617678; Name=DN617678; organism=Citrus sinensis; type=EST; length=579bp
TTTTTTTTTTTTTTTTTACTAACTAGATGAAAAATTATAAAAGCAAGTTT
CCAATAGACAATTGTTTTCTCGCTAACAAAACATAAGTTGGTTCACCAAC
TCTTCTTGCATACTACAAGGGAAAATCTAAGCACAACCCTGCATGAGCAG
GTAAGGCTCTGGATAATGTCTTGGAAACAATTTTATTTAAACTCAGACCC
TCTACATAGAAACACAAACACCACATTTAGCACAAAGAAACACCACACTT
AGCACAACTAAGCGTGTTACATACTCAAGCCACGCCGAGTAAGTTACTGG
GTCTTCGACATGTGGACAATCAAATCCACCACACGAGTACTGTAGCCCCA
CTCATTGTCATACCATGAGACAAGCTTCACAAATTTCTTACTCAAAGCAA
TACCAGCCTTGGCATCAAAGATACTTGACCTACTGTCACCAACAAAGTCG
GTGGATACCACATCATCCTCAGTGTATCCCAAGATACCCTTTAGTTTCCC
CTCTGACTCCGCCTTGATGGCAGCTTTGATTTCATCATAAGAAGCATCCT
TCTCCAGCCTCACTGTGAGGTCAACCACT
back to top