DN617678

Overview
NameDN617678
Unique NameDN617678
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3P2_STAAM (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=gapA2 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.703e-13
Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = -2
Query:  321 VVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDL 578
            +VDL V LEK+ + +E+  A   E+ G L+GI+      +VS DF  +  S+I DAK+ + +S   VK+++WYDNEWGYS RVVD+
Sbjct:  242 LVDLVVDLEKEVTAEEVNQAF--ENAG-LEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVMSGNKVKVIAWYDNEWGYSNRVVDV 324          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3P2_STAAC (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain COL) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.703e-13
Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = -2
Query:  321 VVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDL 578
            +VDL V LEK+ + +E+  A   E+ G L+GI+      +VS DF  +  S+I DAK+ + +S   VK+++WYDNEWGYS RVVD+
Sbjct:  242 LVDLVVDLEKEVTAEEVNQAF--ENAG-LEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVMSGNKVKVIAWYDNEWGYSNRVVDV 324          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3P_AQUAE (Glyceraldehyde-3-phosphate dehydrogenase OS=Aquifex aeolicus GN=gap PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.142e-13
Identity = 43/100 (43.00%), Postives = 63/100 (63.00%), Query Frame = -2
Query:  303 VVDLTVRLEK-DASYDEI-----KAAIKAESEGK--LKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 578
            ++DLTV + K  +S +E+     +AA K    GK  LK IL Y ED +VSTD VG+  S+IFDA     +    V + +WYDNEWGYS R+ DL++++++
Sbjct:  241 LIDLTVVVNKAPSSVEEVNEKFREAAQKYRESGKVYLKEILQYCEDPIVSTDIVGNPHSAIFDAPLTQVIDN-LVHIAAWYDNEWGYSCRLRDLVIYLAE 339          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: E4PD_SHEB2 (D-erythrose-4-phosphate dehydrogenase OS=Shewanella baltica (strain OS223) GN=epd PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.142e-13
Identity = 35/89 (39.33%), Postives = 54/89 (60.67%), Query Frame = -2
Query:  309 VDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 575
            +DL+V LEK      +   +++ + G+  GILGYT++ +VS DF  D RSSI D       + + VKL+ W DNEWG++ R++D  + M
Sbjct:  244 IDLSVTLEKTVDIATVNHVLESAANGRFNGILGYTDEPLVSCDFNHDPRSSIVDGTQTRVSAGQLVKLLLWCDNEWGFANRMLDTSLAM 332          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3P_STRP8 (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus pyogenes serotype M18 GN=gap PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.048e-12
Identity = 42/95 (44.21%), Postives = 57/95 (60.00%), Query Frame = -2
Query:  303 VVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDA---KAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 578
            V +L V L+K+ S DEI AA+KA S        GYTED +VS+D VG S  S+FDA   K       + VK+VSWYDNE  Y+ ++V  + + +K
Sbjct:  243 VTELVVTLDKNVSVDEINAAMKAASNDSF----GYTEDPIVSSDIVGVSYGSLFDATQTKVMEVDGSQLVKVVSWYDNEMSYTAQLVRTLEYFAK 333          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3P_STRP6 (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus pyogenes serotype M6 GN=gap PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.048e-12
Identity = 42/95 (44.21%), Postives = 57/95 (60.00%), Query Frame = -2
Query:  303 VVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDA---KAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 578
            V +L V L+K+ S DEI AA+KA S        GYTED +VS+D VG S  S+FDA   K       + VK+VSWYDNE  Y+ ++V  + + +K
Sbjct:  243 VTELVVTLDKNVSVDEINAAMKAASNDSF----GYTEDPIVSSDIVGVSYGSLFDATQTKVMEVDGSQLVKVVSWYDNEMSYTAQLVRTLEYFAK 333          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3P_STRP3 (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus pyogenes serotype M3 GN=gap PE=3 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.048e-12
Identity = 42/95 (44.21%), Postives = 57/95 (60.00%), Query Frame = -2
Query:  303 VVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDA---KAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 578
            V +L V L+K+ S DEI AA+KA S        GYTED +VS+D VG S  S+FDA   K       + VK+VSWYDNE  Y+ ++V  + + +K
Sbjct:  243 VTELVVTLDKNVSVDEINAAMKAASNDSF----GYTEDPIVSSDIVGVSYGSLFDATQTKVMEVDGSQLVKVVSWYDNEMSYTAQLVRTLEYFAK 333          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3P_STRP1 (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus pyogenes serotype M1 GN=gap PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.048e-12
Identity = 42/95 (44.21%), Postives = 57/95 (60.00%), Query Frame = -2
Query:  303 VVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDA---KAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 578
            V +L V L+K+ S DEI AA+KA S        GYTED +VS+D VG S  S+FDA   K       + VK+VSWYDNE  Y+ ++V  + + +K
Sbjct:  243 VTELVVTLDKNVSVDEINAAMKAASNDSF----GYTEDPIVSSDIVGVSYGSLFDATQTKVMEVDGSQLVKVVSWYDNEMSYTAQLVRTLEYFAK 333          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3P_STREQ (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus equisimilis GN=gap PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.048e-12
Identity = 42/95 (44.21%), Postives = 57/95 (60.00%), Query Frame = -2
Query:  303 VVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDA---KAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 578
            V +L V L+K+ S DEI AA+KA S        GYTED +VS+D VG S  S+FDA   K       + VK+VSWYDNE  Y+ ++V  + + +K
Sbjct:  243 VTELVVTLDKNVSVDEINAAMKAASNDSF----GYTEDPIVSSDIVGVSYGSLFDATQTKVMEVDGSQLVKVVSWYDNEMSYTAQLVRTLEYFAK 333          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3P_CORGL (Glyceraldehyde-3-phosphate dehydrogenase OS=Corynebacterium glutamicum GN=gap PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.048e-12
Identity = 38/84 (45.24%), Postives = 53/84 (63.10%), Query Frame = -2
Query:  321 DLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDL 572
            DLT   + + + + I AAIK  + G+    L Y+E+ +VSTD V DS  SIFDA     +S   VK+VSWYDNEWGY+ +++ L
Sbjct:  244 DLTFNTKSEVTVESINAAIKEAAVGEFGETLAYSEEPLVSTDIVHDSHGSIFDAGL-TKVSGNTVKVVSWYDNEWGYTCQLLRL 326          
The following BLAST results are available for this feature:
BLAST of DN617678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 260
Match NameE-valueIdentityDescription
G3P2_STAAM4.703e-1345.35Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAAC4.703e-1345.35Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P_AQUAE6.142e-1343.00Glyceraldehyde-3-phosphate dehydrogenase OS=Aquife... [more]
E4PD_SHEB26.142e-1339.33D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
G3P_STRP81.048e-1244.21Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_STRP61.048e-1244.21Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_STRP31.048e-1244.21Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_STRP11.048e-1244.21Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_STREQ1.048e-1244.21Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_CORGL1.048e-1245.24Glyceraldehyde-3-phosphate dehydrogenase OS=Coryne... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I17_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617678 ID=DN617678; Name=DN617678; organism=Citrus sinensis; type=EST; length=579bp
TTTTTTTTTTTTTTTTTACTAACTAGATGAAAAATTATAAAAGCAAGTTT
CCAATAGACAATTGTTTTCTCGCTAACAAAACATAAGTTGGTTCACCAAC
TCTTCTTGCATACTACAAGGGAAAATCTAAGCACAACCCTGCATGAGCAG
GTAAGGCTCTGGATAATGTCTTGGAAACAATTTTATTTAAACTCAGACCC
TCTACATAGAAACACAAACACCACATTTAGCACAAAGAAACACCACACTT
AGCACAACTAAGCGTGTTACATACTCAAGCCACGCCGAGTAAGTTACTGG
GTCTTCGACATGTGGACAATCAAATCCACCACACGAGTACTGTAGCCCCA
CTCATTGTCATACCATGAGACAAGCTTCACAAATTTCTTACTCAAAGCAA
TACCAGCCTTGGCATCAAAGATACTTGACCTACTGTCACCAACAAAGTCG
GTGGATACCACATCATCCTCAGTGTATCCCAAGATACCCTTTAGTTTCCC
CTCTGACTCCGCCTTGATGGCAGCTTTGATTTCATCATAAGAAGCATCCT
TCTCCAGCCTCACTGTGAGGTCAACCACT
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