DN617678

Overview
NameDN617678
Unique NameDN617678
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:74..652. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: E4PD_SHELP (D-erythrose-4-phosphate dehydrogenase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=epd PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.200e-12
Identity = 34/91 (37.36%), Postives = 50/91 (54.95%), Query Frame = -2
Query:  303 VDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 575
            +DL+V L+K    D +   +   + G  +G++GYT   +VS DF  D RSSI D           VKL+ W DNEWG++ R++D  + M K
Sbjct:  244 IDLSVTLDKRVDIDTVNQVLSQAANGSYQGVVGYTNAPLVSCDFNHDPRSSIVDGTQTRVSDGHLVKLLLWCDNEWGFANRMLDTSLEMIK 334          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3P2_STAES (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.869e-12
Identity = 34/92 (36.96%), Postives = 57/92 (61.96%), Query Frame = -2
Query:  303 VVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 578
            +VDL V LE++ +  ++  A K      L G+L   E  +VS DF  +  S+I D+++ + + +  VK+++WYDNEWGYS RVV++ V + +
Sbjct:  242 LVDLVVDLEQNVTVTQVNDAFK---NADLSGVLDVEEAPLVSVDFNTNPHSAIIDSQSTMVMGQNKVKVIAWYDNEWGYSNRVVEVAVKIGQ 330          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: E4PD_SHEDO (D-erythrose-4-phosphate dehydrogenase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=epd PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.158e-11
Identity = 34/93 (36.56%), Postives = 54/93 (58.06%), Query Frame = -2
Query:  297 VDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 575
            +D++V L        I + ++  ++G+  GILGYT++ +VS DF  D RSSI DA          VKL+ W DNEWG++ R++D  + M + +
Sbjct:  244 IDVSVTLRDRVDISIINSVLQQAAKGRFDGILGYTDEPLVSCDFNHDPRSSIVDATQTRVSDGHLVKLLLWCDNEWGFANRMLDTSLAMIRAK 336          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: E4PD_AERS4 (D-erythrose-4-phosphate dehydrogenase OS=Aeromonas salmonicida (strain A449) GN=epd PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.513e-11
Identity = 31/84 (36.90%), Postives = 49/84 (58.33%), Query Frame = -2
Query:  324 VDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVD 575
            +DL++ + K  +  ++  A++  S G L GIL YTE+ +VS DF  D+ S I D           VK++ W DNEWG++ R++D
Sbjct:  244 MDLSITVRKKVTVTDVNQALQRASRGTLSGILDYTEEPLVSVDFNHDAHSCIIDGTQTRVSDANLVKMLMWCDNEWGFANRMLD 327          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: E4PD_AERHH (D-erythrose-4-phosphate dehydrogenase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=epd PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.513e-11
Identity = 31/84 (36.90%), Postives = 49/84 (58.33%), Query Frame = -2
Query:  324 VDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVD 575
            +DL++ + K  +  ++  A++  S G L GIL YTE+ +VS DF  D+ S I D           VK++ W DNEWG++ R++D
Sbjct:  244 MDLSITVRKKVTVTDVNQALQRASRGTLSGILDYTEEPLVSVDFNHDAHSCIIDGTQTRVSDANLVKMLMWCDNEWGFANRMLD 327          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3P_CAVPO (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Cavia porcellus GN=GAPDH PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.976e-11
Identity = 34/49 (69.39%), Postives = 37/49 (75.51%), Query Frame = -2
Query:  432 VVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDS 578
            VVDLT RLEK A YD+IK  +K  SEG LKGILGYTED VVS DF  D+
Sbjct:   74 VVDLTCRLEKPAKYDDIKKVVKQASEGSLKGILGYTEDQVVSCDFNSDT 122          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3P2_STAEQ (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.581e-11
Identity = 33/86 (38.37%), Postives = 54/86 (62.79%), Query Frame = -2
Query:  321 VVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDL 578
            +VDL V LE++ +  ++  A K      L G+L   E  +VS DF  +  S+I D+++ + + +  VK+++WYDNEWGYS RVV++
Sbjct:  242 LVDLVVDLEQNVTVTQVNDAFK---NADLSGVLDVEEAPLVSVDFNTNPHSAIIDSQSTMVMGQNKVKVIAWYDNEWGYSNRVVEV 324          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3P_HELPJ (Glyceraldehyde-3-phosphate dehydrogenase OS=Helicobacter pylori J99 GN=gapA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.749e-11
Identity = 36/90 (40.00%), Postives = 52/90 (57.78%), Query Frame = -2
Query:  309 VVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 578
            ++DL++ LEK A  D I   +   S+G LKG+L     + VS+DF+ +  S I        L +  VK++ WYDNEWGYS R+VD+   M
Sbjct:  241 MIDLSLFLEKKALKDPINDLLITASKGTLKGVLEIDLKERVSSDFISNPNSVIIAPDLTFTL-ENMVKIMGWYDNEWGYSNRLVDMAQFM 329          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3P_HELPY (Glyceraldehyde-3-phosphate dehydrogenase OS=Helicobacter pylori GN=gapA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.508e-11
Identity = 36/90 (40.00%), Postives = 52/90 (57.78%), Query Frame = -2
Query:  309 VVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 578
            ++DL++ LEK A  D I   +   S+G LKG+L     + VS+DF+ +  S I        L +  VK++ WYDNEWGYS R+VD+   M
Sbjct:  241 MIDLSLFLEKKAPKDPINDLLIEASKGVLKGVLEIDLKERVSSDFISNPHSVIIAPDLTFTL-ENMVKIMGWYDNEWGYSNRLVDMAQFM 329          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3PA_SCEVA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Scenedesmus vacuolatus GN=GapA PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.806e-11
Identity = 32/78 (41.03%), Postives = 46/78 (58.97%), Query Frame = -2
Query:  345 VVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWG 578
            VVDL V++EK    +EI  A K  + G L G+L  +++ +VS DF     SS  D+   + +    VK+V+WYDNEWG
Sbjct:  237 VVDLVVQVEKKTFAEEINNAFKEAAAGSLNGVLAVSDEPLVSVDFRCTDVSSTIDSSLTMVMGADMVKVVAWYDNEWG 314          
The following BLAST results are available for this feature:
BLAST of DN617678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 260
Match NameE-valueIdentityDescription
E4PD_SHELP5.200e-1237.36D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
G3P2_STAES8.869e-1236.96Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
E4PD_SHEDO1.158e-1136.56D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_AERS41.513e-1136.90D-erythrose-4-phosphate dehydrogenase OS=Aeromonas... [more]
E4PD_AERHH1.513e-1136.90D-erythrose-4-phosphate dehydrogenase OS=Aeromonas... [more]
G3P_CAVPO1.976e-1169.39Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P2_STAEQ2.581e-1138.37Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P_HELPJ5.749e-1140.00Glyceraldehyde-3-phosphate dehydrogenase OS=Helico... [more]
G3P_HELPY7.508e-1140.00Glyceraldehyde-3-phosphate dehydrogenase OS=Helico... [more]
G3PA_SCEVA9.806e-1141.03Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I17_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617678 ID=DN617678; Name=DN617678; organism=Citrus sinensis; type=EST; length=579bp
TTTTTTTTTTTTTTTTTACTAACTAGATGAAAAATTATAAAAGCAAGTTT
CCAATAGACAATTGTTTTCTCGCTAACAAAACATAAGTTGGTTCACCAAC
TCTTCTTGCATACTACAAGGGAAAATCTAAGCACAACCCTGCATGAGCAG
GTAAGGCTCTGGATAATGTCTTGGAAACAATTTTATTTAAACTCAGACCC
TCTACATAGAAACACAAACACCACATTTAGCACAAAGAAACACCACACTT
AGCACAACTAAGCGTGTTACATACTCAAGCCACGCCGAGTAAGTTACTGG
GTCTTCGACATGTGGACAATCAAATCCACCACACGAGTACTGTAGCCCCA
CTCATTGTCATACCATGAGACAAGCTTCACAAATTTCTTACTCAAAGCAA
TACCAGCCTTGGCATCAAAGATACTTGACCTACTGTCACCAACAAAGTCG
GTGGATACCACATCATCCTCAGTGTATCCCAAGATACCCTTTAGTTTCCC
CTCTGACTCCGCCTTGATGGCAGCTTTGATTTCATCATAAGAAGCATCCT
TCTCCAGCCTCACTGTGAGGTCAACCACT
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