DN617678

Overview
NameDN617678
Unique NameDN617678
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:74..652. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3P_SCHMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.464e-32
Identity = 69/92 (75.00%), Postives = 78/92 (84.78%), Query Frame = -2
Query:  303 VVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 578
            VVDLT RL K ASY+EIKAA+KA + G LKGIL YTED+VVS+DFVG + SSIFDAKAGI+L+  FVKLVSWYDNE+GYS RVVDLI HM K
Sbjct:  243 VVDLTCRLGKGASYEEIKAAVKAAASGPLKGILEYTEDEVVSSDFVGSTSSSIFDAKAGISLNNNFVKLVSWYDNEFGYSCRVVDLITHMHK 334          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3P2_SCHPO (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schizosaccharomyces pombe GN=gpd3 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.464e-32
Identity = 66/89 (74.16%), Postives = 76/89 (85.39%), Query Frame = -2
Query:  312 VVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVH 578
            VVDLTV+L K  +Y++IKAAIKA SEG +KG+LGYTED VVSTDF GD+ SSIFDA AGI LS +FVKLVSWYDNEWGYS RVVDL+ +
Sbjct:  242 VVDLTVKLAKPTNYEDIKAAIKAASEGPMKGVLGYTEDSVVSTDFCGDNHSSIFDASAGIQLSPQFVKLVSWYDNEWGYSHRVVDLVAY 330          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3P_SCHCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Schizophyllum commune GN=GPD PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.524e-32
Identity = 65/92 (70.65%), Postives = 78/92 (84.78%), Query Frame = -2
Query:  303 VVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 578
            VVDL VRLEK+ASYDEI A +K  SEG LKGILG+T++ VVSTDF G + SSIFD+KAGIA+SK FVKL++WYDNEWGYS RV DL+V+ +K
Sbjct:  241 VVDLVVRLEKEASYDEIVATVKEASEGPLKGILGFTDESVVSTDFTGANESSIFDSKAGIAISKSFVKLIAWYDNEWGYSRRVCDLLVYAAK 332          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3P1_SCHPO (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Schizosaccharomyces pombe GN=tdh1 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.524e-32
Identity = 66/89 (74.16%), Postives = 76/89 (85.39%), Query Frame = -2
Query:  312 VVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVH 578
            VVDLTV+L K  +Y++IKAAIKA SEG +KG+LGYTED VVSTDF GD+ SSIFDA AGI LS +FVKLVSWYDNEWGYS RVVDL+ +
Sbjct:  242 VVDLTVKLAKPTNYEDIKAAIKAASEGPMKGVLGYTEDAVVSTDFCGDNHSSIFDASAGIQLSPQFVKLVSWYDNEWGYSRRVVDLVAY 330          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3P_DEBHA (Glyceraldehyde-3-phosphate dehydrogenase OS=Debaryomyces hansenii GN=GPD PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 5.908e-32
Identity = 68/92 (73.91%), Postives = 78/92 (84.78%), Query Frame = -2
Query:  303 VVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 578
            VVDLTVRL+K A+Y+EI  AIKA S G+LKGILGYTED VVSTDF+G   SSIFD KAGI LS  FVKL+SWYDNE+GYSTRVVDL+ H++K
Sbjct:  241 VVDLTVRLKKSATYEEISEAIKAASNGELKGILGYTEDAVVSTDFLGSDYSSIFDQKAGILLSPTFVKLISWYDNEFGYSTRVVDLLEHVAK 332          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3P2_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces lactis GN=GAP2 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 5.908e-32
Identity = 68/92 (73.91%), Postives = 80/92 (86.96%), Query Frame = -2
Query:  303 VVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 578
            VVDLTV+L K+A+YDEIKA IK  SE +LKGILGYTED VVS+DF+GD+ SSIFDA AGI LS KFVKLV+WYDNE+GYSTRVVDL+  ++K
Sbjct:  239 VVDLTVKLAKEATYDEIKAVIKKASENELKGILGYTEDAVVSSDFLGDTNSSIFDAAAGIQLSPKFVKLVTWYDNEYGYSTRVVDLVELVAK 330          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3P_COTJA (Glyceraldehyde-3-phosphate dehydrogenase OS=Coturnix coturnix japonica GN=GAPDH PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 7.716e-32
Identity = 68/94 (72.34%), Postives = 76/94 (80.85%), Query Frame = -2
Query:  297 VVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 578
            VVDLT RLEK A YD+IK  +KA +EG LKGILGYTED VVS DF GDS SS FDA AGIAL+  FVKLVSWYDNE+GYS RVVDL+VHM+  +
Sbjct:  240 VVDLTCRLEKPAKYDDIKRVVKAAAEGPLKGILGYTEDQVVSCDFNGDSHSSTFDAGAGIALNDNFVKLVSWYDNEFGYSNRVVDLMVHMASKE 333          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3P1_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces marxianus GN=GAP1 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 7.716e-32
Identity = 66/91 (72.53%), Postives = 80/91 (87.91%), Query Frame = -2
Query:  306 VVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 578
            VVDLTV+L K A+YDEIKAA+K  SEGKLK ++GYTED VVS+DF+GD+ S+IFDA AGI LS KFVKLV+WYDNE+GYSTRVVDL+ H++
Sbjct:  239 VVDLTVKLVKAATYDEIKAAVKKVSEGKLKDVVGYTEDAVVSSDFLGDTHSTIFDAAAGIQLSPKFVKLVAWYDNEYGYSTRVVDLVEHVA 329          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3P1_TRIKO (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Trichoderma koningii GN=gpd1 PE=1 SV=3)

HSP 1 Score: 136.346 bits (342), Expect = 1.008e-31
Identity = 66/92 (71.74%), Postives = 77/92 (83.70%), Query Frame = -2
Query:  303 VVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 578
            +VD TVR  KD +YDE+KAAIK  SEG LKGIL YTEDD+VSTD + D  SS FDAKAGIAL+K FVK++SWYDNE+GYS RVVDLIV++SK
Sbjct:  240 LVDFTVRFAKDVTYDEVKAAIKEASEGPLKGILAYTEDDIVSTDILTDPHSSTFDAKAGIALNKNFVKVMSWYDNEYGYSRRVVDLIVYVSK 331          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3P1_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Candida glabrata GN=GPD1 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.008e-31
Identity = 67/92 (72.83%), Postives = 78/92 (84.78%), Query Frame = -2
Query:  303 VVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 578
            VVDLTVR  KD +YDEIKAAIK  SEG++KGIL YTED VVSTDF+GD+ SSIFDA AGI LS +FVKLVSWYDNE+G+S RVVD++  +SK
Sbjct:  240 VVDLTVRFAKDVTYDEIKAAIKKASEGEMKGILAYTEDAVVSTDFLGDTHSSIFDASAGIQLSPRFVKLVSWYDNEYGFSARVVDMVELVSK 331          
The following BLAST results are available for this feature:
BLAST of DN617678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 260
Match NameE-valueIdentityDescription
G3P_SCHMA3.464e-3275.00Glyceraldehyde-3-phosphate dehydrogenase OS=Schist... [more]
G3P2_SCHPO3.464e-3274.16Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schi... [more]
G3P_SCHCO4.524e-3270.65Glyceraldehyde-3-phosphate dehydrogenase OS=Schizo... [more]
G3P1_SCHPO4.524e-3274.16Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Schi... [more]
G3P_DEBHA5.908e-3273.91Glyceraldehyde-3-phosphate dehydrogenase OS=Debary... [more]
G3P2_KLULA5.908e-3273.91Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]
G3P_COTJA7.716e-3272.34Glyceraldehyde-3-phosphate dehydrogenase OS=Coturn... [more]
G3P1_KLUMA7.716e-3272.53Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3P1_TRIKO1.008e-3171.74Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Tric... [more]
G3P1_CANGA1.008e-3172.83Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Cand... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I17_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617678 ID=DN617678; Name=DN617678; organism=Citrus sinensis; type=EST; length=579bp
TTTTTTTTTTTTTTTTTACTAACTAGATGAAAAATTATAAAAGCAAGTTT
CCAATAGACAATTGTTTTCTCGCTAACAAAACATAAGTTGGTTCACCAAC
TCTTCTTGCATACTACAAGGGAAAATCTAAGCACAACCCTGCATGAGCAG
GTAAGGCTCTGGATAATGTCTTGGAAACAATTTTATTTAAACTCAGACCC
TCTACATAGAAACACAAACACCACATTTAGCACAAAGAAACACCACACTT
AGCACAACTAAGCGTGTTACATACTCAAGCCACGCCGAGTAAGTTACTGG
GTCTTCGACATGTGGACAATCAAATCCACCACACGAGTACTGTAGCCCCA
CTCATTGTCATACCATGAGACAAGCTTCACAAATTTCTTACTCAAAGCAA
TACCAGCCTTGGCATCAAAGATACTTGACCTACTGTCACCAACAAAGTCG
GTGGATACCACATCATCCTCAGTGTATCCCAAGATACCCTTTAGTTTCCC
CTCTGACTCCGCCTTGATGGCAGCTTTGATTTCATCATAAGAAGCATCCT
TCTCCAGCCTCACTGTGAGGTCAACCACT
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