DN617678

Overview
NameDN617678
Unique NameDN617678
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:74..652. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3P_PODAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Podospora anserina GN=GPD PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.316e-31
Identity = 65/92 (70.65%), Postives = 80/92 (86.96%), Query Frame = -2
Query:  303 VVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 578
            VVDLT RLEK ASY+ IKAA+K  SEG+LKGILGYTED++VS+D  G++ SSIFDAKAGI+L+  FVKLVSWYDNEWGYS RV+DL+ +++K
Sbjct:  241 VVDLTCRLEKPASYETIKAALKEASEGELKGILGYTEDEIVSSDLNGNANSSIFDAKAGISLNDNFVKLVSWYDNEWGYSRRVLDLLSYVAK 332          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3P_CLAPU (Glyceraldehyde-3-phosphate dehydrogenase OS=Claviceps purpurea GN=GPD-1 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.316e-31
Identity = 62/92 (67.39%), Postives = 79/92 (85.87%), Query Frame = -2
Query:  303 VVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 578
            VVDLTVR+EK A+YDEIKA +K  + G L GILGYTEDD+VS+D  G++ SSIFDAKAGI+L+K FVKL++WYDNEWGYS RV+DL+ +++K
Sbjct:  241 VVDLTVRIEKGATYDEIKATVKEAANGSLAGILGYTEDDIVSSDMNGNTNSSIFDAKAGISLNKNFVKLIAWYDNEWGYSRRVLDLLAYVAK 332          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3P1_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces lactis GN=GAP1 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.316e-31
Identity = 63/91 (69.23%), Postives = 80/91 (87.91%), Query Frame = -2
Query:  306 VVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 578
            VVDLTV+L K+A+YDEIKAA+K  S+GKLK ++GYTED VVS+DF+GD+ S+IFDA AGI LS KFVK+V+WYDNE+GYS RVVDL+ H++
Sbjct:  239 VVDLTVKLAKEATYDEIKAAVKKASQGKLKNVVGYTEDSVVSSDFLGDTHSTIFDASAGIQLSPKFVKVVAWYDNEYGYSERVVDLVEHVA 329          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3P_PICCI (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia ciferrii GN=GPD PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.719e-31
Identity = 64/91 (70.33%), Postives = 82/91 (90.11%), Query Frame = -2
Query:  306 VVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 578
            VVDLTV+L KDA+YDEIKAA+K  +EG LKG++GYTED VVS+DF+ D+RSSIFDA+AGI LS +FVKL++WYDNE+GYSTRVVDL+ +++
Sbjct:  241 VVDLTVKLLKDATYDEIKAAVKEAAEGPLKGVVGYTEDQVVSSDFLTDNRSSIFDAEAGIWLSPRFVKLIAWYDNEYGYSTRVVDLLEYVA 331          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3P_CRYPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryphonectria parasitica PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.719e-31
Identity = 64/92 (69.57%), Postives = 78/92 (84.78%), Query Frame = -2
Query:  303 VVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 578
            VVDLTVR+EK A+Y++IK A+K  ++G LKG+L YTEDDVVSTD  G+  SSIFDAKAGI+L+  FVKLVSWYDNEWGYS RV+DLI H++K
Sbjct:  241 VVDLTVRIEKGATYEQIKTAVKKAADGPLKGVLAYTEDDVVSTDMNGNPNSSIFDAKAGISLNDHFVKLVSWYDNEWGYSRRVLDLISHVAK 332          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3P_CHICK (Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus gallus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 135.191 bits (339), Expect = 2.245e-31
Identity = 67/94 (71.28%), Postives = 76/94 (80.85%), Query Frame = -2
Query:  297 VVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 578
            VVDLT RLEK A YD+IK  +KA ++G LKGILGYTED VVS DF GDS SS FDA AGIAL+  FVKLVSWYDNE+GYS RVVDL+VHM+  +
Sbjct:  240 VVDLTCRLEKPAKYDDIKRVVKAAADGPLKGILGYTEDQVVSCDFNGDSHSSTFDAGAGIALNDHFVKLVSWYDNEFGYSNRVVDLMVHMASKE 333          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3P_SORMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Sordaria macrospora GN=GPD PE=3 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 2.932e-31
Identity = 66/92 (71.74%), Postives = 77/92 (83.70%), Query Frame = -2
Query:  303 VVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 578
            VVDLTVR+EK ASYDEIK  +K  SEG L GIL YTED+VVS+D  G+  SSIFDAKAGI+L+K FVKLVSWYDNEWGYS RV+DLI +++K
Sbjct:  241 VVDLTVRIEKGASYDEIKEVVKKASEGPLAGILAYTEDEVVSSDMNGNPASSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLISYVAK 332          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3P_OMPOL (Glyceraldehyde-3-phosphate dehydrogenase OS=Omphalotus olearius GN=GPD PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.932e-31
Identity = 65/92 (70.65%), Postives = 77/92 (83.70%), Query Frame = -2
Query:  303 VVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 578
            VVDL VRLEK+A+YDEIKAA+K    G LKGIL YTED +VSTDF G++ SSIFDA AGIAL+K FVKL++WYDNEWGYS RVVDLI  +++
Sbjct:  241 VVDLVVRLEKEATYDEIKAAVKEAVAGPLKGILDYTEDALVSTDFTGNTHSSIFDASAGIALNKNFVKLIAWYDNEWGYSRRVVDLITFVAQ 332          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3P_CANAL (Glyceraldehyde-3-phosphate dehydrogenase OS=Candida albicans GN=TDH1 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.932e-31
Identity = 67/91 (73.63%), Postives = 77/91 (84.62%), Query Frame = -2
Query:  306 VVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 578
            VVDLTVRL+K ASY+EI  AIK  SEG LKG+LGYTED VVSTDF+G S SSIFD KAGI LS  FVKL+SWYDNE+GYST+VVDL+ H++
Sbjct:  241 VVDLTVRLKKAASYEEIAPAIKKASEGPLKGVLGYTEDAVVSTDFLGSSYSSIFDEKAGILLSPTFVKLISWYDNEYGYSTKVVDLLEHVA 331          
BLAST of DN617678 vs. ExPASy Swiss-Prot
Match: G3P_DANRE (Glyceraldehyde-3-phosphate dehydrogenase OS=Danio rerio GN=gapdh PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 3.829e-31
Identity = 66/94 (70.21%), Postives = 76/94 (80.85%), Query Frame = -2
Query:  297 VVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 578
            VVDLTVRLEK A YDEIK  +KA ++G +KGILGYTE  VVSTDF GD RSSIFDA AGIAL+  FVKLV+WYDNE+GYS RV DL+ HM+  +
Sbjct:  240 VVDLTVRLEKPAKYDEIKKVVKAAADGPMKGILGYTEHQVVSTDFNGDCRSSIFDAGAGIALNDHFVKLVTWYDNEFGYSNRVCDLMAHMASKE 333          
The following BLAST results are available for this feature:
BLAST of DN617678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 260
Match NameE-valueIdentityDescription
G3P_PODAN1.316e-3170.65Glyceraldehyde-3-phosphate dehydrogenase OS=Podosp... [more]
G3P_CLAPU1.316e-3167.39Glyceraldehyde-3-phosphate dehydrogenase OS=Clavic... [more]
G3P1_KLULA1.316e-3169.23Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3P_PICCI1.719e-3170.33Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_CRYPA1.719e-3169.57Glyceraldehyde-3-phosphate dehydrogenase OS=Crypho... [more]
G3P_CHICK2.245e-3171.28Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus... [more]
G3P_SORMA2.932e-3171.74Glyceraldehyde-3-phosphate dehydrogenase OS=Sordar... [more]
G3P_OMPOL2.932e-3170.65Glyceraldehyde-3-phosphate dehydrogenase OS=Omphal... [more]
G3P_CANAL2.932e-3173.63Glyceraldehyde-3-phosphate dehydrogenase OS=Candid... [more]
G3P_DANRE3.829e-3170.21Glyceraldehyde-3-phosphate dehydrogenase OS=Danio ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I17_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617678 ID=DN617678; Name=DN617678; organism=Citrus sinensis; type=EST; length=579bp
TTTTTTTTTTTTTTTTTACTAACTAGATGAAAAATTATAAAAGCAAGTTT
CCAATAGACAATTGTTTTCTCGCTAACAAAACATAAGTTGGTTCACCAAC
TCTTCTTGCATACTACAAGGGAAAATCTAAGCACAACCCTGCATGAGCAG
GTAAGGCTCTGGATAATGTCTTGGAAACAATTTTATTTAAACTCAGACCC
TCTACATAGAAACACAAACACCACATTTAGCACAAAGAAACACCACACTT
AGCACAACTAAGCGTGTTACATACTCAAGCCACGCCGAGTAAGTTACTGG
GTCTTCGACATGTGGACAATCAAATCCACCACACGAGTACTGTAGCCCCA
CTCATTGTCATACCATGAGACAAGCTTCACAAATTTCTTACTCAAAGCAA
TACCAGCCTTGGCATCAAAGATACTTGACCTACTGTCACCAACAAAGTCG
GTGGATACCACATCATCCTCAGTGTATCCCAAGATACCCTTTAGTTTCCC
CTCTGACTCCGCCTTGATGGCAGCTTTGATTTCATCATAAGAAGCATCCT
TCTCCAGCCTCACTGTGAGGTCAACCACT
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