DN617674

Overview
NameDN617674
Unique NameDN617674
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length659
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617674 vs. ExPASy Swiss-Prot
Match: YNCB_ECOLI (Putative NADP-dependent oxidoreductase yncB OS=Escherichia coli (strain K12) GN=yncB PE=3 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 1.401e-25
Identity = 70/165 (42.42%), Postives = 94/165 (56.97%), Query Frame = -1
Query:  183 GSAGSKEKVDLLKNKFGFDDAFNYKQEPDLDAALKRCFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVCGMISQYN-LEKPEGVHNLEQLIG----KRIRLEGF-LAGDYYHLYPKFLELVIPAIREGKMVYVEDIAEGLENAPAALVGLFTGRNVGKQLVAVA 659
            G AG  EK        GFD   ++  +   +   K C P+GIDIY+ENVGGK+ DAVL  +    RI VCG++S YN  E P G   L  L+     KRIRL+GF +A DY H   +F   +   ++E K+ Y E+I +GLENAP   +GL  G+N GK ++ VA
Sbjct:  179 GVAGGAEKCRHATEVLGFDVCLDHHADDFAEQLAKAC-PKGIDIYYENVGGKVFDAVLPLLNTSARIPVCGLVSSYNATELPPGPDRLPLLMATVLKKRIRLQGFIIAQDYGHRIHEFQREMGQWVKEDKIHYREEITDGLENAPQTFIGLLKGKNFGKVVIRVA 342          
BLAST of DN617674 vs. ExPASy Swiss-Prot
Match: PTGR1_HUMAN (Prostaglandin reductase 1 OS=Homo sapiens GN=PTGR1 PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 2.920e-23
Identity = 66/158 (41.77%), Postives = 91/158 (57.59%), Query Frame = -1
Query:  192 GSAGSKEKVDLLKNKFGFDDAFNYKQEPDLDAALKRCFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVCGMISQYNLEKP-EGVHNLEQLIGKRIRLEGFLAGDYY-HLYPKFLELVIPAIREGKMVYVEDIAEGLENAPAALVGLFTGRNVGKQLV 659
            G+ GS EKV  L+ K GFD  FNYK    L+  LK+  P G D YF+NVGG+  + V+  M+  GRIA+CG IS YN   P       E +I + +R+E F+   +      K L+ ++  + EGK+ Y E I EG EN PAA +G+  G N+GK +V
Sbjct:  171 GAVGSDEKVAYLQ-KLGFDVVFNYKTVESLEETLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGAISTYNRTGPLPPGPPPEIVIYQELRMEAFVVYRWQGDARQKALKDLLKWVLEGKIQYKEYIIEGFENMPAAFMGMLKGDNLGKTIV 327          
BLAST of DN617674 vs. ExPASy Swiss-Prot
Match: PTGR2_PONAB (Prostaglandin reductase 2 OS=Pongo abelii GN=PTGR2 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.772e-20
Identity = 57/165 (34.55%), Postives = 88/165 (53.33%), Query Frame = -1
Query:  183 GSAGSKEKVDLLKNKFGFDDAFNYKQEPDLDAALKRCFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVCGMISQYNLEKP------EGVHNLEQLIGKRIRLEGFLAGDYYHLYPKFLELVIPAIREGKMVYVEDIAEGLENAPAALVGLFTGRNVGKQLVAVA 659
            G  G+ EK  LL ++ GFD A NYK++   +   + C P G+D+YF+NVGG + D V+  M     I +CG ISQYN + P        +  +++   + I  E FL  +Y   +   +  +    +EGK+   E +  GLEN  AA   + TG N+GKQ+V ++
Sbjct:  185 GICGTHEKCVLLTSELGFDAAINYKKDNVAEQLRESC-PAGVDVYFDNVGGNISDTVISQMNENSHIILCGQISQYNKDVPYPPPLSPAIEAIQK--ERNITRERFLVLNYRDKFEPGILQLSQWFKEGKLKIKETVINGLENMGAAFQSMMTGGNIGKQIVCIS 346          
BLAST of DN617674 vs. ExPASy Swiss-Prot
Match: PTGR2_HUMAN (Prostaglandin reductase 2 OS=Homo sapiens GN=PTGR2 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.772e-20
Identity = 57/165 (34.55%), Postives = 88/165 (53.33%), Query Frame = -1
Query:  183 GSAGSKEKVDLLKNKFGFDDAFNYKQEPDLDAALKRCFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVCGMISQYNLEKP------EGVHNLEQLIGKRIRLEGFLAGDYYHLYPKFLELVIPAIREGKMVYVEDIAEGLENAPAALVGLFTGRNVGKQLVAVA 659
            G  G+ EK  LL ++ GFD A NYK++   +   + C P G+D+YF+NVGG + D V+  M     I +CG ISQYN + P        +  +++   + I  E FL  +Y   +   +  +    +EGK+   E +  GLEN  AA   + TG N+GKQ+V ++
Sbjct:  185 GICGTHEKCILLTSELGFDAAINYKKDNVAEQLRESC-PAGVDVYFDNVGGNISDTVISQMNENSHIILCGQISQYNKDVPYPPPLSPAIEAIQK--ERNITRERFLVLNYKDKFEPGILQLSQWFKEGKLKIKETVINGLENMGAAFQSMMTGGNIGKQIVCIS 346          
BLAST of DN617674 vs. ExPASy Swiss-Prot
Match: PTGR2_BOVIN (Prostaglandin reductase 2 OS=Bos taurus GN=PTGR2 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.558e-19
Identity = 57/165 (34.55%), Postives = 86/165 (52.12%), Query Frame = -1
Query:  183 GSAGSKEKVDLLKNKFGFDDAFNYKQEPDLDAALKRCFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVCGMISQYNLE------KPEGVHNLEQLIGKRIRLEGFLAGDYYHLYPKFLELVIPAIREGKMVYVEDIAEGLENAPAALVGLFTGRNVGKQLVAVA 659
            G  G+ EK   L ++ GFD A NYK+    +   K C P G+D+YF+NVGG + D V+  M     I +CG ISQYN +       P  +  +++   + I  E FL  +Y   +   +  +    +EGK+   E +  GLEN  AA   + TG N+GKQ+V ++
Sbjct:  185 GICGTPEKCLFLTSELGFDAAINYKEGNVAEQLHKLC-PAGVDVYFDNVGGDISDTVISQMNQNSHIILCGQISQYNKDVPYPPPLPPAIEAIQK--ERNITRERFLVLNYKDKFEFGILQLSQWFKEGKLKIKETMINGLENMGAAFQSMMTGGNIGKQIVCIS 346          
BLAST of DN617674 vs. ExPASy Swiss-Prot
Match: PTGR2_RAT (Prostaglandin reductase 2 OS=Rattus norvegicus GN=Ptgr2 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 4.364e-19
Identity = 56/165 (33.94%), Postives = 87/165 (52.73%), Query Frame = -1
Query:  183 GSAGSKEKVDLLKNKFGFDDAFNYKQEPDLDAALKRCFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVCGMISQYNLE------KPEGVHNLEQLIGKRIRLEGFLAGDYYHLYPKFLELVIPAIREGKMVYVEDIAEGLENAPAALVGLFTGRNVGKQLVAVA 659
            G  G+ EK   L ++ GFD A NYK   ++   L+   P G+D+YF+NVGG + +AV+  M     I +CG ISQYN +       P  V  +++   + I  E F+  +Y   +   +  +    +EGK+   E +A GLEN   A   + TG N+GKQ+V ++
Sbjct:  185 GICGTHEKCLFLTSELGFDAAVNYKTG-NVAEQLREACPDGVDVYFDNVGGDISNAVISQMNQNSHIILCGQISQYNKDVPYPPPLPPAVEAIQK--ERNITRERFMVLNYKDRFEPGILQLSQWFKEGKLKIKETVANGLENMGVAFQSMMTGGNIGKQIVRIS 346          
BLAST of DN617674 vs. ExPASy Swiss-Prot
Match: PTGR2_MOUSE (Prostaglandin reductase 2 OS=Mus musculus GN=Ptgr2 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 8.230e-18
Identity = 56/165 (33.94%), Postives = 87/165 (52.73%), Query Frame = -1
Query:  183 GSAGSKEKVDLLKNKFGFDDAFNYKQEPDLDAALKRCFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVCGMISQYNLE------KPEGVHNLEQLIGKRIRLEGFLAGDYYHLYPKFLELVIPAIREGKMVYVEDIAEGLENAPAALVGLFTGRNVGKQLVAVA 659
            G  G++EK   L ++ GFD A NYK   ++   L+   P G+D+YF+NVGG + +AV+  M     I +CG ISQY+ +       P  V  + +   + I  E F   +Y   +   +  +    +EGK+   E +A+GLEN   A   + TG NVGKQ+V ++
Sbjct:  185 GICGTQEKCLFLTSELGFDAAVNYKTG-NVAEQLREACPGGVDVYFDNVGGDISNAVISQMNENSHIILCGQISQYSNDVPYPPPLPPAVEAIRK--ERNITRERFTVLNYKDKFEPGILQLSQWFKEGKLKVKETMAKGLENMGVAFQSMMTGGNVGKQIVCIS 346          
BLAST of DN617674 vs. ExPASy Swiss-Prot
Match: ZADH2_MOUSE (Zinc-binding alcohol dehydrogenase domain-containing protein 2 OS=Mus musculus GN=Zadh2 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.241e-15
Identity = 53/170 (31.18%), Postives = 87/170 (51.18%), Query Frame = -1
Query:  192 GSAGSKEKVDLLKNKFGFDDAFNYKQEPDLDAALKRCFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVCGMISQYNLEKPEGVHNLE------QLIGKRIRLEGFLAGDYYHLYPKFLELVIPAIREGKMVYVEDIAE--------GLENAPAALVGLFTGRNVGKQLV 659
            G+  S EK   LK+  G D   NY+ EP ++  LK+ +P+G+D+ +E+VGG M D  +  +  +GR+ V G IS Y  + P G+  ++      +L+ K   L GF    Y+  Y   +E ++     G +V   D+          GLE+   A+  ++TG+N GK +V
Sbjct:  202 GTCSSDEKAAFLKS-IGCDRPINYRTEP-VETVLKQEYPEGVDVVYESVGGAMFDLAVDALATKGRLIVIGFISGY--QSPTGLSPIKAGVLPTKLLKKSASLRGFFLNHYFSKYQAAMERLLELYARGDLVCEVDLGHLAPDGRFIGLESVFQAVDYMYTGKNTGKLVV 367          
BLAST of DN617674 vs. ExPASy Swiss-Prot
Match: QOR_LEIAM (Probable quinone oxidoreductase OS=Leishmania amazonensis PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.210e-14
Identity = 48/166 (28.92%), Postives = 81/166 (48.80%), Query Frame = -1
Query:  186 GSAGSKEKVDLLKNKFGFDDAFNYKQEPDLDAALKRCFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVCGMISQYN------LEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYPKFLELVIPAIREG--KMVYVEDIAEGLENAPAALVGLFTGRNVGKQLVAV 659
            G+  S+EK + LK+  G D   NYK E  LD  L    P+G+D+ +E VGG   +  + ++ +  R+ + G IS Y          P G      L+ K   L GF    ++ + PK++  ++  ++ G  K+   + +  GL +   A+  L++G N GK LV +
Sbjct:  176 GTCSSEEKAEFLKS-IGCDHVINYKTE-SLDGRLHELCPKGVDVVYECVGGHTFNDAVRHVAVHARVVIIGSISSYKSGEVVPFSDPSGTSVTMLLLVKSASLNGFFLPQFHDVIPKYMANLLQYLKAGQVKLFVDKKVFHGLSSVADAVDHLYSGANYGKVLVEI 339          
BLAST of DN617674 vs. ExPASy Swiss-Prot
Match: ZADH2_HUMAN (Zinc-binding alcohol dehydrogenase domain-containing protein 2 OS=Homo sapiens GN=ZADH2 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.041e-12
Identity = 51/170 (30.00%), Postives = 85/170 (50.00%), Query Frame = -1
Query:  192 GSAGSKEKVDLLKNKFGFDDAFNYKQEPDLDAALKRCFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVCGMISQYNLEKPEGVHNLE------QLIGKRIRLEGFLAGDYYHLYPKFLELVIPAIREGKMVYVEDIAE--------GLENAPAALVGLFTGRNVGKQLV 659
            G+  S EK   LK+  G D   NYK EP +   LK+ +P+G+D+ +E+VGG M D  +  +  +GR+ V G IS Y  + P G+  ++      +L+ K   ++GF    Y   Y   +  ++     G +V   D+ +        GLE+   A+  ++ G+N GK +V
Sbjct:  202 GTCSSDEKSAFLKS-LGCDRPINYKTEP-VGTVLKQEYPEGVDVVYESVGGAMFDLAVDALATKGRLIVIGFISGY--QTPTGLSPVKAGTLPAKLLKKSASVQGFFLNHYLSKYQAAMSHLLEMCVSGDLVCEVDLGDLSPEGRFTGLESIFRAVNYMYMGKNTGKIVV 367          
The following BLAST results are available for this feature:
BLAST of DN617674 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
YNCB_ECOLI1.401e-2542.42Putative NADP-dependent oxidoreductase yncB OS=Esc... [more]
PTGR1_HUMAN2.920e-2341.77Prostaglandin reductase 1 OS=Homo sapiens GN=PTGR1... [more]
PTGR2_PONAB1.772e-2034.55Prostaglandin reductase 2 OS=Pongo abelii GN=PTGR2... [more]
PTGR2_HUMAN1.772e-2034.55Prostaglandin reductase 2 OS=Homo sapiens GN=PTGR2... [more]
PTGR2_BOVIN2.558e-1934.55Prostaglandin reductase 2 OS=Bos taurus GN=PTGR2 P... [more]
PTGR2_RAT4.364e-1933.94Prostaglandin reductase 2 OS=Rattus norvegicus GN=... [more]
PTGR2_MOUSE8.230e-1833.94Prostaglandin reductase 2 OS=Mus musculus GN=Ptgr2... [more]
ZADH2_MOUSE2.241e-1531.18Zinc-binding alcohol dehydrogenase domain-containi... [more]
QOR_LEIAM7.210e-1428.92Probable quinone oxidoreductase OS=Leishmania amaz... [more]
ZADH2_HUMAN1.041e-1230.00Zinc-binding alcohol dehydrogenase domain-containi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01I14_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617674 ID=DN617674; Name=DN617674; organism=Citrus sinensis; type=EST; length=659bp
TTTTCCTTCAATGCATCCACTTAAGTTCTTGTCTGAATCCAAATTATTTG
ACACTTCACACACAGAACAATCCAATACAATTACTAAACGAGGATAGTTC
ATATTAACACATGTAAACATTTTTAACCGGACAATGGATTCAGTCACATA
TTCCCAGCTCATCCATATTGGCTTTTGTATTAAGCAACTGCAACTAGCTG
CTTGCCGACGTTCCGGCCAGTGAAGAGCCCGACAAGGGCTGCAGGAGCAT
TCTCGAGTCCTTCGGCTATGTCTTCCACATACACCATCTTTCCTTCTCTG
ATTGCAGGAATGACCAGTTCCAAGAATTTCGGATAGAGGTGATAGTAATC
ACCAGCTAGAAATCCTTCCAGGCGAATCCGTTTCCCGATCAGTTGCTCTA
AGTTGTGTACGCCTTCAGGTTTTTCCAGGTTGTACTGCGAGATCATACCG
CATACCGCAATGCGGCCCCGGAGCCTCATGTTGAGTAGCACTGCGTCCAG
CATCTTTCCCCCAACGTTTTCGAAATATATGTCGATTCCTTGAGGGAAGC
ATCTTTTGAGTGCTGCATCCAAGTCTGGCTCTTGCTTGTAGTTAAAAGCA
TCATCAAATCCAAACTTGTTCTTCAACAAATCGACCTTTTCTTTGCTTCC
AGCACTTCC
back to top