DN617672
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3L_HUMAN (60S ribosomal protein L3-like OS=Homo sapiens GN=RPL3L PE=1 SV=3) HSP 1 Score: 253.832 bits (647), Expect = 7.572e-67 Identity = 118/201 (58.71%), Postives = 152/201 (75.62%), Query Frame = -1 Query: 194 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQ------ESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 778 KV +A EKQ+PV +VF + E+ID+I VTKG+G +GV +RW +LPRKTH+GLRKVACIGAWHPARV ++ARAGQ GYHHRTE+NKK++++G+G + T +D T K ITP+GGFPHYG V +D++M+KGC G KKRV+TLR+SLL SR A+E I++KFIDT+SKFGHGRFQT QEK+ + G K Sbjct: 193 KVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRIGRGPHMEDGKLVKNNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQAVENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQK 393
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_NEUCR (60S ribosomal protein L3 OS=Neurospora crassa GN=rpl-3 PE=3 SV=1) HSP 1 Score: 252.677 bits (644), Expect = 1.687e-66 Identity = 114/195 (58.46%), Postives = 153/195 (78.46%), Query Frame = -1 Query: 194 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 778 KV++ +G FEK + +D++F+KDE+ID+I VTKG G+ GV RWG +LPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT +N K+Y++GKG E + TE D T+K ITPMGGF YG + +D++M+KG G KKRV+TLR+S+ TSR ALE++++K+IDTSS+FGHG FQT EK+++ G +K Sbjct: 192 KVEFGHGLFEKPVSIDSIFEKDEVIDVIAVTKGHGFTGVTARWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQAGYHHRTSVNHKIYRIGKGDAED-SAATEVDVTKKKITPMGGFVRYGEINNDFVMVKGSVPGVKKRVMTLRKSMFVHTSRKALEKVELKWIDTSSEFGHGAFQTPAEKKQFQGTLK 385
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3B_SCHPO (60S ribosomal protein L3-B OS=Schizosaccharomyces pombe GN=rpl3b PE=2 SV=2) HSP 1 Score: 248.825 bits (634), Expect = 2.436e-65 Identity = 115/195 (58.97%), Postives = 150/195 (76.92%), Query Frame = -1 Query: 194 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 778 KV++A FEK + + + F+++EMID+IGVT+GKG EG RWG RLPRKTHRGLRKVACIGAWHPA V +TVARAG GY HRT++N K+Y++G G ++ T+FD TEK ITPMGGF YG+V++D++M+ G GP KRV+TLR+SLL TSR ALE + +K+IDT+SKFGHGRFQT E +++ G +K Sbjct: 191 KVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIG-AGDDAKNASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLK 384
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3A_SCHPO (60S ribosomal protein L3-A OS=Schizosaccharomyces pombe GN=rpl3a PE=1 SV=2) HSP 1 Score: 248.825 bits (634), Expect = 2.436e-65 Identity = 115/195 (58.97%), Postives = 150/195 (76.92%), Query Frame = -1 Query: 194 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 778 KV++A FEK + + + F+++EMID+IGVT+GKG EG RWG RLPRKTHRGLRKVACIGAWHPA V +TVARAG GY HRT++N K+Y++G G ++ T+FD TEK ITPMGGF YG+V++D++M+ G GP KRV+TLR+SLL TSR ALE + +K+IDT+SKFGHGRFQT E +++ G +K Sbjct: 191 KVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIG-AGDDAKNASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLK 384
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_ENCCU (60S ribosomal protein L3 OS=Encephalitozoon cuniculi GN=RPL3-1 PE=1 SV=1) HSP 1 Score: 240.35 bits (612), Expect = 8.663e-63 Identity = 117/196 (59.69%), Postives = 150/196 (76.53%), Query Frame = -1 Query: 191 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMKA 778 KV++A G EK+I + VF +E ID IGVTKGKG++G V R+GV + PRK+ +G+RKVACIGAWHP+RV +++ARAGQ G+H RTE NK+VY +G G TEFD TEK I+PMGGFPHYG V++D++M+KG VG +KRVVTLR+SLL+Q A EE+ IKF+DTSSK GHGRFQT+ EK+ +YG KA Sbjct: 187 KVEWALGRLEKEIAIGEVFGVNENIDTIGVTKGKGFQGTVKRFGVRKQPRKSRKGIRKVACIGAWHPSRVMYSIARAGQMGFHRRTEKNKRVYMIGNGSSNIK---TEFDLTEKPISPMGGFPHYGEVRNDFIMVKGAVVGARKRVVTLRKSLLRQR---AGEELVIKFVDTSSKIGHGRFQTSAEKKAFYGARKA 376
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_PIG (60S ribosomal protein L3 (Fragment) OS=Sus scrofa GN=RPL3 PE=2 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 2.218e-42 Identity = 78/130 (60.00%), Postives = 102/130 (78.46%), Query Frame = -1 Query: 374 QIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGK------GGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMI 745 ++PV+ VF +DEMID+IGVTKGKGY+GV +RW +LPRKTHRGLRKVACIGAWHPAR +F+VARAGQ GYHHRTE+NKK+YK+G+ G + T++D ++K I P+G F HYG V +D++M+ Sbjct: 1 RVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARXAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNXXTDYDLSDKSINPLGRFVHYGEVTNDFVML 130
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_THESM (50S ribosomal protein L3P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl3p PE=3 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 3.665e-37 Identity = 78/175 (44.57%), Postives = 109/175 (62.29%), Query Frame = -1 Query: 254 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSK 778 K +Y K+I V + Q+ E++DI+ VTKGKG +G V RWGV K +G RKVA IG WHPARV +TV RAGQ G+HHRTE NK++ ++G+ G+ + G + +ITP GGFPHYG+VK+D++MI G G KR++ +R ++ R E +I +I SK Sbjct: 190 KFNYIKEKLGKEIRVGEILQEGELLDIVAVTKGKGTQGPVKRWGVKLTSHKDSKGRRKVATIGPWHPARVMWTVPRAGQMGFHHRTEFNKRLLRIGENGKLTLNG------EKIEITPNGGFPHYGVVKNDFIMIAGTIPGAIKRIIRMRPAVRPPAKRPPAEAPQITYISRESK 358
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_PYRFU (50S ribosomal protein L3P OS=Pyrococcus furiosus GN=rpl3p PE=3 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 3.430e-35 Identity = 72/175 (41.14%), Postives = 108/175 (61.71%), Query Frame = -1 Query: 254 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSK 778 K +Y K++ V V ++ E++D+I VTKGKG +G V RWG+ K +G RKV IG WHPARV +TV AGQ G+HHRTE+NK++ +G+ G+ + + TE +ITP GGFPHYGIV+ D++MI G G KR++ +R ++ + ++ +I ++ SK Sbjct: 195 KFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENGK-----LKLDENTEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQITYVSVESK 364
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_PYRHO (50S ribosomal protein L3P OS=Pyrococcus horikoshii GN=rpl3p PE=3 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 4.480e-35 Identity = 73/175 (41.71%), Postives = 106/175 (60.57%), Query Frame = -1 Query: 254 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSK 778 K +Y K+I V V ++ E++D+I VTKGKG +G V RWG+ K +G RKV IG WHPARV +TV AGQ G+HHRTE+NK++ +G+ G+ D E +ITP GGFPHYGIV+ D++MI G G KR++ +R ++ + ++ +I ++ SK Sbjct: 193 KFNYIKEKLGKEIRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENGK------LVIDGNEIEITPKGGFPHYGIVRGDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQITYVSVESK 361
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_PYRAB (50S ribosomal protein L3P OS=Pyrococcus abyssi GN=rpl3p PE=3 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 5.851e-35 Identity = 72/175 (41.14%), Postives = 106/175 (60.57%), Query Frame = -1 Query: 254 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSK 778 K +Y K++ V V ++ E++D+I VTKGKG +G V RWG+ K +G RKV IG WHPARV +TV AGQ G+HHRTE+NK++ +G+ G+ D E +ITP GGFPHYGIV+ D++MI G G KR++ +R ++ + ++ +I ++ SK Sbjct: 192 KFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENGK------LVIDGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQITYVSVESK 360 The following BLAST results are available for this feature:
BLAST of DN617672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 84
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Sequences
The
following sequences are available for this feature:
EST sequence >DN617672 ID=DN617672; Name=DN617672; organism=Citrus sinensis; type=EST; length=778bpback to top |