DN617672
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_PYRKO (50S ribosomal protein L3P OS=Pyrococcus kodakaraensis GN=rpl3p PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 9.342e-33 Identity = 73/177 (41.24%), Postives = 104/177 (58.76%), Query Frame = -1 Query: 254 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSK 778 K DYA K++ V + E++D+I VTKGKG +G V RWGV K R R + +G WHPARV +TV +AGQ G+HHRTE NK++ +G+ G+ D E +ITP GGFPHYGIV+ D+LMI+G G KR++ +R ++ + +E +I ++ SK Sbjct: 175 KFDYAKEKIGKELRAGEVLHEGELLDVIAVTKGKGTQGPVKRWGVKVQFHKAQRAGKGRHIGNLGPWHPARVMWTVPQAGQMGFHHRTEFNKRLIAIGENGK------LVLDGNEIEITPKGGFPHYGIVRSDFLMIEGTIPGSFKRIIRVRPAIRPPKKKPPVERPQITYVSRESK 345
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_THEGJ (50S ribosomal protein L3P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl3p PE=3 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 1.220e-32 Identity = 73/177 (41.24%), Postives = 104/177 (58.76%), Query Frame = -1 Query: 254 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSK 778 K +YA K+I V + E++D+I VTKGKG +G V RWGV K R R + +G WHPARV +TV +AGQ G+HHRTE NK++ +G+ G+ G E DITP GGFPHYGI++ D+LMI+G G KR++ +R ++ + +E +I ++ SK Sbjct: 175 KFEYAKERIGKEIRASEVLHEGELLDVIAVTKGKGTQGPVKRWGVKVQFHKAQRAGKGRHIGNLGPWHPARVMWTVPQAGQMGFHHRTEFNKRLIAIGENGKLVLNG------NEIDITPKGGFPHYGIIRSDFLMIEGSVPGSFKRIIRVRPAIKPPKKKPPVERPQITYVSRESK 345
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_THEON (50S ribosomal protein L3P OS=Thermococcus onnurineus (strain NA1) GN=rpl3p PE=3 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 2.718e-32 Identity = 71/177 (40.11%), Postives = 105/177 (59.32%), Query Frame = -1 Query: 254 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSK 778 K DYA K++ V + E++D+I VTKGKG +G V RWG+ K R R V +G WHP RV +TV +AGQ G+HHRTE NK++ +G+ G+ + ++ E +ITP GGFPHYGI++ D+LMI+G G KR++ +R ++ + +E +I +I SK Sbjct: 175 KFDYAKEKIGKELRASEVLHEGELLDVIAVTKGKGTQGPVKRWGIKIQFHKAQRAGKGRHVGNLGPWHPTRVMWTVPQAGQMGFHHRTEFNKRLIAIGENGK-----LKLDEKNEIEITPKGGFPHYGIIRSDFLMIQGTIPGSFKRIIRVRPAIRPPKKKPPVERPQITYISRESK 346
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_METJA (50S ribosomal protein L3P OS=Methanocaldococcus jannaschii GN=rpl3p PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 7.909e-32 Identity = 72/179 (40.22%), Postives = 108/179 (60.34%), Query Frame = -1 Query: 248 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVT-RLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 778 +++YA KQ+ + VFQ+ E++D IGVTKGKG++G V RWGV + + +G+ R V IG W P V ++V GQ GYH RTE NK++ K+G G E ITP GGF HYG+++++Y+++KG GP KR++ LR+++ Q + + E I +I T+SK G Sbjct: 172 RLNYAKEILGKQLNITDVFQEGELVDTIGVTKGKGFQGQVKRWGVKIQFGKHARKGVGRHVGSIGPWQPKMVMWSVPMPGQMGYHQRTEYNKRILKIGNNGDE--------------ITPKGGFLHYGVIRNNYVVLKGSVQGPAKRLIVLRRAIRPQEPLIKVPE--ITYISTTSKQG 334
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_ARCFU (50S ribosomal protein L3P OS=Archaeoglobus fulgidus GN=rpl3p PE=3 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 8.744e-31 Identity = 69/178 (38.76%), Postives = 105/178 (58.99%), Query Frame = -1 Query: 248 VDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 775 +DYA K+I V VF + +ID+I VTKGKG++G V RWGV L K R R+V +G W+P V +TV +AGQ G+H RTE NK++ K+G+ G+E ITP GGF HYG+++ Y+++ G GP KR++ +R ++ + + + + I ++ T+SK G Sbjct: 169 LDYAISKLGKEISVSEVFDEGAIIDVIAVTKGKGFQGPVKRWGVITLDAKHARSSKHRRVGNLGPWNPHHVRWTVPQAGQMGFHQRTEYNKRLIKIGENGEE--------------ITPKGGFLHYGVIRTQYVLVTGSVPGPVKRLIRMRDAI--RPPKAHFDGVNIVYVSTTSKQG 330
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_METKA (50S ribosomal protein L3P OS=Methanopyrus kandleri GN=rpl3p PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.263e-29 Identity = 66/155 (42.58%), Postives = 95/155 (61.29%), Query Frame = -1 Query: 320 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSL 778 + +YA ++I VF + E++D+ +TKGKG++GVV RWGVT RKT R R + IG P+RV +TV AGQ GYH RTE NK++ K+G+ G+E +TP GGF +YG+V+ DY+MI G GPKKR++ +R ++ Sbjct: 178 RFEYAVEILSEEIRAKDVFDEGEIVDVSAITKGKGFQGVVKRWGVTIQDRKTQRKQKGRHIGSIGPITPSRVRWTVPMAGQVGYHQRTEHNKRILKIGEDGEE--------------VTPRGGFVNYGVVRGDYIMIHGTVPGPKKRLIRVRPAV 318
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_META3 (50S ribosomal protein L3P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl3p PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 3.674e-29 Identity = 66/179 (36.87%), Postives = 104/179 (58.10%), Query Frame = -1 Query: 245 VDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVT-RLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGH 775 + YA K++ ++ VF E ID + +TKGKG++G V RWG+ + + ++G+ R IG W P R+ +TV AGQ G+H RTE NK++ K+G+ G E I P GGF +YG+VK++Y+++KG GP KR+V LR+++ + L E + ++ T SK G+ Sbjct: 171 IAYAKDIIGKKLSINDVFTGGEFIDTVAITKGKGFQGPVKRWGIKIQFGKHQNKGVGRHTGSIGPWTPKRIMWTVPMAGQVGFHQRTEYNKRILKIGENGSE--------------IVPKGGFLNYGVVKNNYVLVKGSVQGPAKRMVVLREAIRNPEDKFGLPE--LTYVSTESKQGN 333
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_METTP (50S ribosomal protein L3P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl3p PE=3 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 6.266e-29 Identity = 70/175 (40.00%), Postives = 99/175 (56.57%), Query Frame = -1 Query: 248 AYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 766 A G Q+ V +F E ID+ VTKGKG +G V RWG+ RK R LR V +G WHPAR+S+ V + GQ GYH RTE NK++ +G G DITP GGF YG+V+++Y++IKG GP KR+V +R++ ++ + A + +I ++ SK G Sbjct: 175 AEGLLGSQVAVSNIFNVGEWIDVSAVTKGKGTQGPVKRWGIMLQKRKHSRTGKLRHVGNLGPWHPARISWRVPQLGQTGYHQRTEFNKRIMAIGTNG--------------TDITPDGGFVGYGVVRNEYMLIKGSVPGPVKRLVRMRRA-IRPGAAFAPKAPQILYVSKESKQG 334
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_METVS (50S ribosomal protein L3P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl3p PE=3 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 1.069e-28 Identity = 72/180 (40.00%), Postives = 101/180 (56.11%), Query Frame = -1 Query: 245 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVT-RLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGH 778 K+ YA K + ++ VF+ E ID + VTKGKG++G V RWGV + + +G+ R+ IG W P RV +TV AGQ G+H RTE NK++ KLG G E ITP GGF +YG VK+ Y+++KG GP KR+V LR ++ + L E + +I SK G+ Sbjct: 171 KLAYAKDILGKTLSINDVFETGEFIDTLAVTKGKGFQGPVKRWGVKIQFGKHQRKGVGRQTGSIGPWRPKRVMWTVPLAGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGAVRPAEDKFGLPE--VTYISKESKQGN 334
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_METVA (50S ribosomal protein L3P OS=Methanococcus vannielii GN=rpl3p PE=3 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 1.069e-28 Identity = 72/180 (40.00%), Postives = 101/180 (56.11%), Query Frame = -1 Query: 245 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVT-RLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGH 778 K+ YA K + ++ VF+ E ID + VTKGKG++G V RWGV + + +G+ R+ IG W P RV +TV AGQ G+H RTE NK++ KLG G E ITP GGF +YG VK+ Y+++KG GP KR+V LR ++ + L E + +I SK G+ Sbjct: 171 KLAYAKDILGKTLSINDVFETGEFIDTLAVTKGKGFQGPVKRWGVKIQFGKHQRKGVGRQTGSIGPWRPKRVMWTVPLAGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGAVRPAEDKFGLPE--VTYISKESKQGN 334 The following BLAST results are available for this feature:
BLAST of DN617672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 84
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Sequences
The
following sequences are available for this feature:
EST sequence >DN617672 ID=DN617672; Name=DN617672; organism=Citrus sinensis; type=EST; length=778bpback to top |