DN617672

Overview
NameDN617672
Unique NameDN617672
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6055 contig Csv1_Contig6055:14..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_PYRAR (50S ribosomal protein L3P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.000e-26
Identity = 64/152 (42.11%), Postives = 90/152 (59.21%), Query Frame = -1
Query:  329 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLR 778
            ++ +A     K +    VF   +++D+I VTKGKG++GVV R+GVT LPR  K  +G R+   IG   PA + FT  R GQ G+H RTE NK++ K+G+ G E              ITP  GFPHYG++K  Y++I+G   G +KR+V LR
Sbjct:  177 RIKFAISLLGKTVSPKDVFSPGQLVDVIAVTKGKGWQGVVKRFGVTILPRWHKHRKGHRRTGTIGPQAPA-LMFTQPRPGQMGFHQRTEYNKRLLKIGENGAE--------------ITPKSGFPHYGVIKGPYILIQGSLPGARKRLVVLR 313          
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_PYRIL (50S ribosomal protein L3P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.307e-26
Identity = 68/176 (38.64%), Postives = 96/176 (54.55%), Query Frame = -1
Query:  257 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSS 778
            ++ +A     K +    VF   +++D+I VTKGKGY+GV+ R+GVT LPR  K  +G R+   IG   PA V FT  R GQ G+H RTE NK++ K+G  G E              ITP  GF HYG+VK  Y++I+G   G +KR+V LR  +          E ++ +I + S
Sbjct:  181 RIKFAVSLLGKTVSPKEVFTAGQLVDVIAVTKGKGYQGVIKRFGVTILPRWHKHRKGHRRTGTIGPQAPA-VMFTQPRPGQMGFHQRTEYNKRIIKIGDNGAE--------------ITPKSGFLHYGVVKGPYILIQGTVPGARKRLVVLRYPVRPPKKAPPAAEPQVVWISSQS 341          
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_METMA (50S ribosomal protein L3P OS=Methanosarcina mazei GN=rpl3p PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.307e-26
Identity = 66/179 (36.87%), Postives = 99/179 (55.31%), Query Frame = -1
Query:  248 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHR--GLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 778
            K +YA       + V  VF+   ++D   +T GKG +G V RWG+     K  R   LR++  +G+++P+RVS+ V + GQ GYH RTE NK++ K+G  G+E              +TP GGF +YG+V+ DY++IKG   GP KR++ LR  +  +  +  L E  I +I   SK G
Sbjct:  175 KFEYAKSILGNLVNVTDVFKNGTVVDTAAITIGKGTQGPVKRWGIQLQKGKHSRQGSLRQIGTLGSFNPSRVSWRVPQMGQMGYHQRTEFNKRILKIGSDGEE--------------VTPEGGFINYGLVRGDYVLIKGSVPGPSKRLIRLRDPI--RAKKADLGEPNILYISRESKQG 337          
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_METS3 (50S ribosomal protein L3P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.706e-26
Identity = 67/179 (37.43%), Postives = 97/179 (54.19%), Query Frame = -1
Query:  248 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 778
            K++ A      ++    +  + + +D I  TKGKG++GVV RWG+     K  R    R V  IG W P+R  +TVA+AGQ GYH RTE NKK+ K+    +               I P GGF  YG+VK+DY+++KG   GP KR+V LRQ +  + +  + +  +I +I T SK G
Sbjct:  171 KLNTALELLGNEVKASDILNEGQFVDAIATTKGKGFQGVVKRWGIRIQYGKAVRAGKGRHVGSIGPWTPSRTMWTVAQAGQMGYHKRTEFNKKILKIASADEVD------------QINPDGGFVKYGLVKNDYVLVKGSLPGPSKRLVILRQPI--RPNNKSEDMPQINYISTKSKQG 335          
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_THENV (50S ribosomal protein L3P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.802e-26
Identity = 64/152 (42.11%), Postives = 88/152 (57.89%), Query Frame = -1
Query:  329 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLR 778
            ++ +A     K +    VF   +++D+I VTKGKGY+GV+ R+GVT LPR  K  +G R+   IG   PA + FT  R GQ G+H RTE NK+V K+G  G E              ITP  GF HYG+++  Y++I+G   G KKR+V LR
Sbjct:  177 RIKFAVSLLGKTVSPKEVFTAGQLVDVIAVTKGKGYQGVIKRFGVTILPRWHKHRKGHRRTGTIGPQAPA-LMFTQPRPGQMGFHQRTEYNKRVVKIGDNGAE--------------ITPKSGFLHYGVIRGPYILIQGTVPGAKKRLVVLR 313          
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_METMJ (50S ribosomal protein L3P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.965e-26
Identity = 66/179 (36.87%), Postives = 93/179 (51.96%), Query Frame = -1
Query:  248 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRK--VACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 778
            ++ YA     K+I +    +  E +D+  VT GKG EG V RWGV    RK  RG +K  +  +G WHP  V + V + GQ GY  RTE NK++ K+G  G E              ITP GGF HYG+V+  Y++IKG   GP KR+V +R ++  +     +    I F+   S+ G
Sbjct:  175 QIAYAAEILGKEITISGNLEVGEYVDVTAVTTGKGTEGPVKRWGVQVRKRKHSRGGKKRHIGNLGPWHPHHVRWQVPQMGQMGYQQRTEFNKRILKIGADGDE--------------ITPAGGFLHYGLVRGPYVLIKGSVPGPNKRLVRIRSAI--RQGEHTVRTPAINFVSVQSQQG 337          
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_STAMF (50S ribosomal protein L3P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.464e-25
Identity = 71/180 (39.44%), Postives = 101/180 (56.11%), Query Frame = -1
Query:  248 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFT-VARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 778
            ++DYA       + VD VF++ + IDIIGVTKGKG++GV+ R+GV  LPR  K  +G RK   IG+  P   + +   + GQ G+H RTE NK++ K+G  G E              +TP GGF  YGIV   Y+M+ G  +GP+KR++ LR   ++  S   LE  +I +    SK G
Sbjct:  233 RIDYAEKLLGNYVTVDQVFREGQFIDIIGVTKGKGFQGVIKRFGVKELPRWHKHRKGSRK---IGSRSPGFGTMSETPQPGQMGFHRRTEYNKRIIKIGINGWE--------------VTPKGGFLGYGIVYGPYIMLHGSIIGPRKRLLVLRHP-IRPPSWYPLEAPQIIYYSHESKQG 394          
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_METPE (50S ribosomal protein L3P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.464e-25
Identity = 63/179 (35.20%), Postives = 96/179 (53.63%), Query Frame = -1
Query:  248 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRK--VACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 778
            KV++A      ++ +  V    E  D+  +T GKG +G V RWG+    RK  RG +K  +  +G W+P  V + V + GQ GY  RT+ NK++ K+G+ G               DITP GGF HYG++++ Y+MIKG   GP KR++ +R ++ K      +    I+F+ T SK G
Sbjct:  175 KVEFAQSIIGNEVNLADVIGAGEYADVTAITTGKGTQGPVKRWGIMLRKRKHSRGGKKRHIGNLGPWNPHHVRWQVPQMGQMGYQQRTDFNKRILKIGENGT--------------DITPAGGFLHYGLLRNPYVMIKGSVPGPVKRLIRIRPAVRKGEHHARVP--AIEFVSTQSKQG 337          
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_METB6 (50S ribosomal protein L3P OS=Methanoregula boonei (strain 6A8) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.464e-25
Identity = 64/177 (36.16%), Postives = 96/177 (54.24%), Query Frame = -1
Query:  248 DYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 772
            +YA+G   K+I +  V +     DI  +T GKG +G V RWGVT   RK   G   R V  +G W+P  V + V ++GQ GY  RTE NK++ K+G+ G E              ITP GGF +YG++++ Y++IKG   GP KR++ +R ++  +     +    I+F+   SK G
Sbjct:  177 EYAFGLLGKEIRLSNVIETGAYADITAITIGKGTQGPVKRWGVTLRKRKHSVGGKERHVGTLGPWNPHHVRWEVPQSGQMGYQQRTEFNKRILKIGENGAE--------------ITPAGGFLNYGVIRNAYVVIKGSIPGPAKRLIRIRPAI--RQGEHVVRSPAIQFVSVQSKQG 337          
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_METHJ (50S ribosomal protein L3P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.597e-24
Identity = 66/179 (36.87%), Postives = 92/179 (51.40%), Query Frame = -1
Query:  248 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 778
            + +Y      K   + ++F+  +  D+  +TKGKG +G V RWGV    RK  RG   R V  +G W P  V + V   GQ GYH RTE NK++ K+G+ G E              ITP GGF +YG V+  Y++IKG   GP KR+V +R ++  +     + E  I FI   SK G
Sbjct:  175 RFEYGLSMLGKDFDIRSLFKVGQYTDVTAITKGKGTQGPVKRWGVHLRKRKHSRGKKERHVGTLGPWTPHHVRWQVPMMGQMGYHQRTEFNKRLLKIGEDGAE--------------ITPEGGFINYGEVRARYVLIKGSVPGPSKRLVRIRHAM--RLGEHKIREPTIGFISLESKQG 337          
The following BLAST results are available for this feature:
BLAST of DN617672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RL3_PYRAR1.000e-2642.1150S ribosomal protein L3P OS=Pyrobaculum arsenatic... [more]
RL3_PYRIL1.307e-2638.6450S ribosomal protein L3P OS=Pyrobaculum islandicu... [more]
RL3_METMA1.307e-2636.8750S ribosomal protein L3P OS=Methanosarcina mazei ... [more]
RL3_METS31.706e-2637.4350S ribosomal protein L3P OS=Methanobrevibacter sm... [more]
RL3_THENV3.802e-2642.1150S ribosomal protein L3P OS=Thermoproteus neutrop... [more]
RL3_METMJ4.965e-2636.8750S ribosomal protein L3P OS=Methanoculleus marisn... [more]
RL3_STAMF2.464e-2539.4450S ribosomal protein L3P OS=Staphylothermus marin... [more]
RL3_METPE2.464e-2535.2050S ribosomal protein L3P OS=Methanosphaerula palu... [more]
RL3_METB62.464e-2536.1650S ribosomal protein L3P OS=Methanoregula boonei ... [more]
RL3_METHJ1.597e-2436.8750S ribosomal protein L3P OS=Methanospirillum hung... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I13_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617672 ID=DN617672; Name=DN617672; organism=Citrus sinensis; type=EST; length=778bp
TTTTTTAAATTTAAAAATATTCAATAGAATAAAGCACGACCATCTCTTAA
AAAATAAAATAAAAAAAAGGAAAAAGAAACACAGCTGATGCCAGGCTCAA
AAACTGTTCCAAGATAGTCAAACTGGATAAAATTTAGACTGCCTGAATTA
ACTATAACGGTGCAAAACTCTTGTCTTTTTAGCATAATTATGCTTTCATG
CGTCCATAGTACTTCTGTTTCTCCTGTGTAGTCTGGAAGCGGCCATGCCC
AAACTTGGAAGAGGTATCAATGAACTTGATTTTGATTTCCTCAAGAGCTA
AACGAGATGTCTGTTTGAGAAGCGACTGACGAAGCGTGACCACCCTCTTC
TTAGGTCCAACACAGCATCCCTTGATCATCAAATAATCATCTTTCACAAT
ACCATAGTGAGGAAAGCCACCCATTGGGGTAATGTCCTTCTCAGTCCTGT
CAAATTCAGTTATGCCAGTGTGAGACTCCTGTCCACCCTTGCCAAGCTTG
TAAACCTTCTTGTTCATTTCAGTACGATGATGGTATCCATTCTGACCAGC
TCTGGCAACTGTGAAGGAAACCCTAGCAGGATGCCAGGCACCAATACAAG
CCACCTTACGCAGACCTCTGTGAGTCTTGCGAGGAAGGCGGGTAACACCC
CAACGGGTGACAACACCTTCATAACCTTTACCTTTCGTGACACCGATGAT
GTCAATCATCTCATCCTTCTGGAAAACAGCATCAACAGGAATTTGCTTTT
CAAAGAAGCCATATGCATAGTCAACTTT
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