DN617672
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_PYRAR (50S ribosomal protein L3P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl3p PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 1.000e-26 Identity = 64/152 (42.11%), Postives = 90/152 (59.21%), Query Frame = -1 Query: 329 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLR 778 ++ +A K + VF +++D+I VTKGKG++GVV R+GVT LPR K +G R+ IG PA + FT R GQ G+H RTE NK++ K+G+ G E ITP GFPHYG++K Y++I+G G +KR+V LR Sbjct: 177 RIKFAISLLGKTVSPKDVFSPGQLVDVIAVTKGKGWQGVVKRFGVTILPRWHKHRKGHRRTGTIGPQAPA-LMFTQPRPGQMGFHQRTEYNKRLLKIGENGAE--------------ITPKSGFPHYGVIKGPYILIQGSLPGARKRLVVLR 313
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_PYRIL (50S ribosomal protein L3P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl3p PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.307e-26 Identity = 68/176 (38.64%), Postives = 96/176 (54.55%), Query Frame = -1 Query: 257 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSS 778 ++ +A K + VF +++D+I VTKGKGY+GV+ R+GVT LPR K +G R+ IG PA V FT R GQ G+H RTE NK++ K+G G E ITP GF HYG+VK Y++I+G G +KR+V LR + E ++ +I + S Sbjct: 181 RIKFAVSLLGKTVSPKEVFTAGQLVDVIAVTKGKGYQGVIKRFGVTILPRWHKHRKGHRRTGTIGPQAPA-VMFTQPRPGQMGFHQRTEYNKRIIKIGDNGAE--------------ITPKSGFLHYGVVKGPYILIQGTVPGARKRLVVLRYPVRPPKKAPPAAEPQVVWISSQS 341
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_METMA (50S ribosomal protein L3P OS=Methanosarcina mazei GN=rpl3p PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.307e-26 Identity = 66/179 (36.87%), Postives = 99/179 (55.31%), Query Frame = -1 Query: 248 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHR--GLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 778 K +YA + V VF+ ++D +T GKG +G V RWG+ K R LR++ +G+++P+RVS+ V + GQ GYH RTE NK++ K+G G+E +TP GGF +YG+V+ DY++IKG GP KR++ LR + + + L E I +I SK G Sbjct: 175 KFEYAKSILGNLVNVTDVFKNGTVVDTAAITIGKGTQGPVKRWGIQLQKGKHSRQGSLRQIGTLGSFNPSRVSWRVPQMGQMGYHQRTEFNKRILKIGSDGEE--------------VTPEGGFINYGLVRGDYVLIKGSVPGPSKRLIRLRDPI--RAKKADLGEPNILYISRESKQG 337
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_METS3 (50S ribosomal protein L3P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl3p PE=3 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.706e-26 Identity = 67/179 (37.43%), Postives = 97/179 (54.19%), Query Frame = -1 Query: 248 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 778 K++ A ++ + + + +D I TKGKG++GVV RWG+ K R R V IG W P+R +TVA+AGQ GYH RTE NKK+ K+ + I P GGF YG+VK+DY+++KG GP KR+V LRQ + + + + + +I +I T SK G Sbjct: 171 KLNTALELLGNEVKASDILNEGQFVDAIATTKGKGFQGVVKRWGIRIQYGKAVRAGKGRHVGSIGPWTPSRTMWTVAQAGQMGYHKRTEFNKKILKIASADEVD------------QINPDGGFVKYGLVKNDYVLVKGSLPGPSKRLVILRQPI--RPNNKSEDMPQINYISTKSKQG 335
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_THENV (50S ribosomal protein L3P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl3p PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 3.802e-26 Identity = 64/152 (42.11%), Postives = 88/152 (57.89%), Query Frame = -1 Query: 329 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLR 778 ++ +A K + VF +++D+I VTKGKGY+GV+ R+GVT LPR K +G R+ IG PA + FT R GQ G+H RTE NK+V K+G G E ITP GF HYG+++ Y++I+G G KKR+V LR Sbjct: 177 RIKFAVSLLGKTVSPKEVFTAGQLVDVIAVTKGKGYQGVIKRFGVTILPRWHKHRKGHRRTGTIGPQAPA-LMFTQPRPGQMGFHQRTEYNKRVVKIGDNGAE--------------ITPKSGFLHYGVIRGPYILIQGTVPGAKKRLVVLR 313
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_METMJ (50S ribosomal protein L3P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl3p PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 4.965e-26 Identity = 66/179 (36.87%), Postives = 93/179 (51.96%), Query Frame = -1 Query: 248 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRK--VACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 778 ++ YA K+I + + E +D+ VT GKG EG V RWGV RK RG +K + +G WHP V + V + GQ GY RTE NK++ K+G G E ITP GGF HYG+V+ Y++IKG GP KR+V +R ++ + + I F+ S+ G Sbjct: 175 QIAYAAEILGKEITISGNLEVGEYVDVTAVTTGKGTEGPVKRWGVQVRKRKHSRGGKKRHIGNLGPWHPHHVRWQVPQMGQMGYQQRTEFNKRILKIGADGDE--------------ITPAGGFLHYGLVRGPYVLIKGSVPGPNKRLVRIRSAI--RQGEHTVRTPAINFVSVQSQQG 337
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_STAMF (50S ribosomal protein L3P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl3p PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.464e-25 Identity = 71/180 (39.44%), Postives = 101/180 (56.11%), Query Frame = -1 Query: 248 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFT-VARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 778 ++DYA + VD VF++ + IDIIGVTKGKG++GV+ R+GV LPR K +G RK IG+ P + + + GQ G+H RTE NK++ K+G G E +TP GGF YGIV Y+M+ G +GP+KR++ LR ++ S LE +I + SK G Sbjct: 233 RIDYAEKLLGNYVTVDQVFREGQFIDIIGVTKGKGFQGVIKRFGVKELPRWHKHRKGSRK---IGSRSPGFGTMSETPQPGQMGFHRRTEYNKRIIKIGINGWE--------------VTPKGGFLGYGIVYGPYIMLHGSIIGPRKRLLVLRHP-IRPPSWYPLEAPQIIYYSHESKQG 394
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_METPE (50S ribosomal protein L3P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl3p PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.464e-25 Identity = 63/179 (35.20%), Postives = 96/179 (53.63%), Query Frame = -1 Query: 248 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRK--VACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 778 KV++A ++ + V E D+ +T GKG +G V RWG+ RK RG +K + +G W+P V + V + GQ GY RT+ NK++ K+G+ G DITP GGF HYG++++ Y+MIKG GP KR++ +R ++ K + I+F+ T SK G Sbjct: 175 KVEFAQSIIGNEVNLADVIGAGEYADVTAITTGKGTQGPVKRWGIMLRKRKHSRGGKKRHIGNLGPWNPHHVRWQVPQMGQMGYQQRTDFNKRILKIGENGT--------------DITPAGGFLHYGLLRNPYVMIKGSVPGPVKRLIRIRPAVRKGEHHARVP--AIEFVSTQSKQG 337
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_METB6 (50S ribosomal protein L3P OS=Methanoregula boonei (strain 6A8) GN=rpl3p PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.464e-25 Identity = 64/177 (36.16%), Postives = 96/177 (54.24%), Query Frame = -1 Query: 248 DYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 772 +YA+G K+I + V + DI +T GKG +G V RWGVT RK G R V +G W+P V + V ++GQ GY RTE NK++ K+G+ G E ITP GGF +YG++++ Y++IKG GP KR++ +R ++ + + I+F+ SK G Sbjct: 177 EYAFGLLGKEIRLSNVIETGAYADITAITIGKGTQGPVKRWGVTLRKRKHSVGGKERHVGTLGPWNPHHVRWEVPQSGQMGYQQRTEFNKRILKIGENGAE--------------ITPAGGFLNYGVIRNAYVVIKGSIPGPAKRLIRIRPAI--RQGEHVVRSPAIQFVSVQSKQG 337
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_METHJ (50S ribosomal protein L3P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl3p PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.597e-24 Identity = 66/179 (36.87%), Postives = 92/179 (51.40%), Query Frame = -1 Query: 248 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 778 + +Y K + ++F+ + D+ +TKGKG +G V RWGV RK RG R V +G W P V + V GQ GYH RTE NK++ K+G+ G E ITP GGF +YG V+ Y++IKG GP KR+V +R ++ + + E I FI SK G Sbjct: 175 RFEYGLSMLGKDFDIRSLFKVGQYTDVTAITKGKGTQGPVKRWGVHLRKRKHSRGKKERHVGTLGPWTPHHVRWQVPMMGQMGYHQRTEFNKRLLKIGEDGAE--------------ITPEGGFINYGEVRARYVLIKGSVPGPSKRLVRIRHAM--RLGEHKIREPTIGFISLESKQG 337 The following BLAST results are available for this feature:
BLAST of DN617672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 84
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Sequences
The
following sequences are available for this feature:
EST sequence >DN617672 ID=DN617672; Name=DN617672; organism=Citrus sinensis; type=EST; length=778bpback to top |